Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0005870

Physical Location & Seq

Genomic Coordinates Reverse (-)

51230861 .. 51231756

Gene Structure 896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG249800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGGCTTCCCAGTGGGTTACACAGAGGTCTTCTTCCCCAACCTCTTCCTCCACACCCTCTCTCTTTTGGGTTTCATCCGCAACCTCATTTTCTTGCTCTTCCACTTTCTGGGCCTTTCTGATTTCCTCGAGACTGACGCGGGCGTCTGGCCCGAGACCCGGGCCCAGCTGCTGCCCGGGTGCCAGACTCCCGCGTCGGTTCTTCTGATCCGGGAATTCCTCCCCGTGATCAGGTTTGAGGACATCGCCGGAGACCCGCCGGAGAGCTGCGCCGTCTGCCTGTACGAGTTCGAGGGCAGTGAGGAGATCAGGTGCTTGACGAATTGCAAGCACATTTTTCACCGGGCGTGTTTGGACCGTTGGATGGACCACGACCAGAAGACGTGTCCGCTTTGCCGGACCGCGTTTGTGCCTGAAGAGGCCAGCGAGGAGTTTAATCGACGGCTCTGGGCCACCGCCGAGTCGGAGCTGGAGCTGGAGCTGGAGCTCAACCGTGATTTTTACAGTAGCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0046686 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

171

Amino Acids

19.83

Weight (kDa)

4.64

Isoelectric Point (pI)

55.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	89 - 133	2e-12	Ring finger domain
zf-RING_11	PF17123	90 - 118	6.7e-08	RING-like zinc finger
zf-RING_5	PF14634	90 - 134	1e-07	zinc-RING finger domain
zf-C3HC4_2	PF13923	90 - 132	1e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	90 - 132	1.3e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	97 - 133	1.5e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61460
fragaria_vesca	FvH4_5g02880 FvH4_7g14900
malus_domestica	MD01G1067800.v1.1 MD06G1088300.v1.1 MD07G1133100.v1.1 MD14G1109400.v1.1
prunus_persica	Prupe.2G174100_v2.0.a1 Prupe.5G104300_v2.0.a1
pyrus_communis	pycom14g10350
rosa_chinensis	RchiOBHm_Chr1g0356851 RchiOBHm_Chr7g0197001
rosa_laevigata	RLG00000003966 RLG00000028076
rosa_multiflora	Rmu_sc0003248.1_g000003
rosa_roxburghii	Rroxscaffold_3G00258740 Rroxscaffold_4G00299260
rosa_rugosa	Rorug07G0037000
rosa_samantha	Rh1AG266300 Rh1BG233700 Rh1CG249800 Rh1DG261100 Rh7AG162000 Rh7BG163900 Rh7CG170100 Rh7DG163200
rosa_wichuraiana	Rw1G023530 Rw7G014140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	143, 193
AccB1I	GGYRCC	1 cut(s)	180
AccB7I	CCANNNNNTGG	1 cut(s)	109
AccII	CGCG	3 cut(s)	140, 194, 404
AciI	CCGC	7 cut(s)	79, 140, 192, 257, 389, 402, 456
AclWI	GGATC	1 cut(s)	202
AcsI	RAATTY	1 cut(s)	215
AcuI	CTGAAG	1 cut(s)	435
AcyI	GRCGYC	1 cut(s)	144
AfaI	GTAC	1 cut(s)	284
AfiI	CCNNNNNNNGG	4 cut(s)	109, 159, 231, 364
AflIII	ACRYGT	1 cut(s)	383
AjiI	CACGTC	1 cut(s)	384
AluBI	AGCT	7 cut(s)	169, 267, 469, 475, 481, 487, 510
AluI	AGCT	7 cut(s)	169, 267, 469, 475, 481, 487, 510
Alw21I	GWGCWC	1 cut(s)	489
Alw26I	GTCTC	3 cut(s)	125, 149, 246
AlwI	GGATC	1 cut(s)	202
AlwNI	CAGNNNCTG	2 cut(s)	172, 510
Ama87I	CYCGRG	4 cut(s)	128, 152, 159, 176
AoxI	GGCC	5 cut(s)	112, 149, 162, 420, 450
ApaI	GGGCCC	1 cut(s)	166
ApeKI	GCWGC	3 cut(s)	169, 172, 267
ApoI	RAATTY	1 cut(s)	215
AspLEI	GCGC	1 cut(s)	272
AspS9I	GGNCC	8 cut(s)	112, 150, 162, 163, 355, 367, 399, 450
AsuC2I	CCSGG	6 cut(s)	160, 161, 177, 178, 212, 344
AsuHPI	GGTGA	1 cut(s)	332
AvaI	CYCGRG	4 cut(s)	128, 152, 159, 176
AvaII	GGWCC	3 cut(s)	355, 367, 399
BaeGI	GKGCMC	1 cut(s)	166
BanI	GGYRCC	1 cut(s)	180
BanII	GRGCYC	2 cut(s)	166, 489
BbsI	GAAGAC	2 cut(s)	22, 386
Bbv12I	GWGCWC	1 cut(s)	489
BbvI	GCAGC	3 cut(s)	156, 159, 254
BccI	CCATC	1 cut(s)	358
BceAI	ACGGC	2 cut(s)	257, 458
BclI	TGATCA	1 cut(s)	228
BcnI	CCSGG	6 cut(s)	160, 161, 177, 178, 212, 344
BcoDI	GTCTC	3 cut(s)	125, 149, 246
BisI	GCNGC	3 cut(s)	170, 173, 268
BlsI	GCNGC	3 cut(s)	171, 174, 269
Bme1390I	CCNGG	6 cut(s)	160, 161, 177, 178, 212, 344
Bme18I	GGWCC	3 cut(s)	355, 367, 399
BmeT110I	CYCGRG	4 cut(s)	128, 152, 159, 176
BmgBI	CACGTC	1 cut(s)	384
BmgT120I	GGNCC	8 cut(s)	112, 150, 162, 163, 355, 367, 399, 450
BmiI	GGNNCC	2 cut(s)	164, 182
BmrFI	CCNGG	6 cut(s)	160, 161, 177, 178, 212, 344
BmrI	ACTGGG	1 cut(s)	5
BmuI	ACTGGG	1 cut(s)	5
BpiI	GAAGAC	2 cut(s)	22, 386
BpmI	CTGGAG	3 cut(s)	491, 497, 503
BpuMI	CCSGG	6 cut(s)	160, 161, 177, 178, 212, 344
BsaHI	GRCGYC	1 cut(s)	144
BsaI	GGTCTC	2 cut(s)	149, 246
BsaJI	CCNNGG	2 cut(s)	159, 176
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bsc4I	CCNNNNNNNGG	4 cut(s)	109, 159, 231, 364
Bse1I	ACTGG	1 cut(s)	11
BseDI	CCNNGG	2 cut(s)	159, 176
BseGI	GGATG	2 cut(s)	75, 369
BseLI	CCNNNNNNNGG	4 cut(s)	109, 159, 231, 364
BseNI	ACTGG	1 cut(s)	11
BseRI	GAGGAG	2 cut(s)	317, 443
BseSI	GKGCMC	1 cut(s)	166
BseXI	GCAGC	3 cut(s)	156, 159, 254
BseYI	CCCAGC	1 cut(s)	165
Bsh1236I	CGCG	3 cut(s)	140, 194, 404
BshFI	GGCC	5 cut(s)	114, 151, 164, 422, 452
BshNI	GGYRCC	1 cut(s)	180
BsiHKAI	GWGCWC	1 cut(s)	489
BsiHKCI	CYCGRG	4 cut(s)	128, 152, 159, 176
BsiSI	CCGG	7 cut(s)	160, 177, 211, 249, 260, 343, 397
BslI	CCNNNNNNNGG	4 cut(s)	109, 159, 231, 364
BsmAI	GTCTC	3 cut(s)	125, 149, 246
BsnI	GGCC	5 cut(s)	114, 151, 164, 422, 452
Bso31I	GGTCTC	2 cut(s)	149, 246
BsoBI	CYCGRG	4 cut(s)	128, 152, 159, 176
Bsp120I	GGGCCC	1 cut(s)	162
Bsp1286I	GDGCHC	2 cut(s)	166, 489
Bsp143I	GATC	3 cut(s)	207, 228, 306
BspACI	CCGC	7 cut(s)	79, 140, 192, 257, 389, 402, 456
BspANI	GGCC	5 cut(s)	114, 151, 164, 422, 452
BspFNI	CGCG	3 cut(s)	140, 194, 404
BspLI	GGNNCC	2 cut(s)	164, 182
BspPI	GGATC	1 cut(s)	202
BspQI	GCTCTTC	1 cut(s)	104
BspT107I	GGYRCC	1 cut(s)	180
BspTNI	GGTCTC	2 cut(s)	149, 246
BsrI	ACTGG	1 cut(s)	11
BssECI	CCNNGG	2 cut(s)	159, 176
BssMI	GATC	3 cut(s)	207, 228, 306
BssNI	GRCGYC	1 cut(s)	144
Bst4CI	ACNGT	3 cut(s)	359, 494, 506
Bst6I	CTCTTC	3 cut(s)	50, 104, 411
BstACI	GRCGYC	1 cut(s)	144
BstC8I	GCNNGC	3 cut(s)	142, 329, 424
BstF5I	GGATG	2 cut(s)	75, 369
BstFNI	CGCG	3 cut(s)	140, 194, 404
BstHHI	GCGC	1 cut(s)	272
BstKTI	GATC	3 cut(s)	210, 231, 309
BstMAI	GTCTC	3 cut(s)	125, 149, 246
BstMBI	GATC	3 cut(s)	207, 228, 306
BstMWI	GCNNNNNNNGC	1 cut(s)	276
BstSCI	CCNGG	6 cut(s)	158, 159, 175, 176, 210, 342
BstSLI	GKGCMC	1 cut(s)	166
BstUI	CGCG	3 cut(s)	140, 194, 404
BstV1I	GCAGC	3 cut(s)	156, 159, 254
BstV2I	GAAGAC	2 cut(s)	22, 386
BsuRI	GGCC	5 cut(s)	114, 151, 164, 422, 452
BtgZI	GCGATG	1 cut(s)	229
BtrI	CACGTC	1 cut(s)	384
BtsCI	GGATG	2 cut(s)	75, 369
BtsI	GCAGTG	1 cut(s)	304
BtsIMutI	CAGTG	2 cut(s)	18, 304
Cac8I	GCNNGC	3 cut(s)	142, 329, 424
CaiI	CAGNNNCTG	2 cut(s)	172, 510
CfoI	GCGC	1 cut(s)	272
Cfr13I	GGNCC	8 cut(s)	112, 150, 162, 163, 355, 367, 399, 450
Cfr9I	CCCGGG	2 cut(s)	159, 176
CpoI	CGGWCCG	1 cut(s)	399
CseI	GACGC	3 cut(s)	133, 146, 183
Csp6I	GTAC	1 cut(s)	283
CspI	CGGWCCG	1 cut(s)	399
CviQI	GTAC	1 cut(s)	283
DpnI	GATC	3 cut(s)	209, 230, 308
DpnII	GATC	3 cut(s)	207, 228, 306
DrdI	GACNNNNNNGTC	2 cut(s)	143, 193
DseDI	GACNNNNNNGTC	2 cut(s)	143, 193
Eam1104I	CTCTTC	3 cut(s)	50, 104, 411
EarI	CTCTTC	3 cut(s)	50, 104, 411
Ecl136II	GAGCTC	1 cut(s)	487
Eco24I	GRGCYC	2 cut(s)	166, 489
Eco31I	GGTCTC	2 cut(s)	149, 246
Eco47I	GGWCC	3 cut(s)	355, 367, 399
Eco53kI	GAGCTC	1 cut(s)	487
Eco57I	CTGAAG	1 cut(s)	435
Eco88I	CYCGRG	4 cut(s)	128, 152, 159, 176
EcoICRI	GAGCTC	1 cut(s)	487
EcoRI	GAATTC	1 cut(s)	215
EcoT38I	GRGCYC	2 cut(s)	166, 489
FauI	CCCGC	3 cut(s)	133, 199, 264
FbaI	TGATCA	1 cut(s)	228
Fnu4HI	GCNGC	3 cut(s)	170, 173, 268
FokI	GGATG	2 cut(s)	62, 376
FriOI	GRGCYC	2 cut(s)	166, 489
Fsp4HI	GCNGC	3 cut(s)	170, 173, 268
GlaI	GCGC	1 cut(s)	271
GluI	GCNGC	3 cut(s)	170, 173, 268
GsaI	CCCAGC	1 cut(s)	169
GsuI	CTGGAG	3 cut(s)	491, 497, 503
HaeIII	GGCC	5 cut(s)	114, 151, 164, 422, 452
HapII	CCGG	7 cut(s)	160, 177, 211, 249, 260, 343, 397
HgaI	GACGC	3 cut(s)	133, 146, 183
HhaI	GCGC	1 cut(s)	272
Hin1I	GRCGYC	1 cut(s)	144
Hin6I	GCGC	1 cut(s)	270
HinP1I	GCGC	1 cut(s)	270
HinfI	GANTC	2 cut(s)	187, 461
HpaII	CCGG	7 cut(s)	160, 177, 211, 249, 260, 343, 397
HphI	GGTGA	1 cut(s)	332
Hpy188I	TCNGA	3 cut(s)	121, 207, 466
Hpy188III	TCNNGA	1 cut(s)	130
Hpy99I	CGWCG	2 cut(s)	199, 444
HpyCH4III	ACNGT	3 cut(s)	359, 494, 506
HpyCH4IV	ACGT	1 cut(s)	383
HpyCH4V	TGCA	1 cut(s)	327
HpyF10VI	GCNNNNNNNGC	1 cut(s)	276
HpySE526I	ACGT	1 cut(s)	383
Hsp92I	GRCGYC	1 cut(s)	144
HspAI	GCGC	1 cut(s)	270
Ksp22I	TGATCA	1 cut(s)	228
Kzo9I	GATC	3 cut(s)	207, 228, 306
LguI	GCTCTTC	1 cut(s)	104
LmnI	GCTCC	4 cut(s)	466, 472, 478, 484
Lsp1109I	GCAGC	3 cut(s)	156, 159, 254
MaeII	ACGT	1 cut(s)	383
MaeIII	GTNAC	1 cut(s)	17
MalI	GATC	3 cut(s)	209, 230, 308
MboI	GATC	3 cut(s)	207, 228, 306
MboII	GAAGA	7 cut(s)	22, 25, 37, 91, 194, 391, 428
MhlI	GDGCHC	2 cut(s)	166, 489
MluCI	AATT	2 cut(s)	215, 322
MlyI	GAGTC	2 cut(s)	181, 470
MmeI	TCCRAC	2 cut(s)	341, 444
MseI	TTAA	1 cut(s)	435
MspA1I	CMGCKG	1 cut(s)	169
MspI	CCGG	7 cut(s)	160, 177, 211, 249, 260, 343, 397
MspR9I	CCNGG	6 cut(s)	160, 161, 177, 178, 212, 344
MvnI	CGCG	3 cut(s)	140, 194, 404
MwoI	GCNNNNNNNGC	1 cut(s)	276
NciI	CCSGG	6 cut(s)	160, 161, 177, 178, 212, 344
NdeII	GATC	3 cut(s)	207, 228, 306
NlaIV	GGNNCC	2 cut(s)	164, 182
NmeAIII	GCCGAG	1 cut(s)	484
PaeR7I	CTCGAG	1 cut(s)	128
PciSI	GCTCTTC	1 cut(s)	104
PflMI	CCANNNNNTGG	1 cut(s)	109
PfoI	TCCNGGA	1 cut(s)	210
PkrI	GCNGC	3 cut(s)	171, 174, 269
PleI	GAGTC	2 cut(s)	181, 469
PpsI	GAGTC	2 cut(s)	181, 469
Psp124BI	GAGCTC	1 cut(s)	489
PspFI	CCCAGC	1 cut(s)	165
PspN4I	GGNNCC	2 cut(s)	164, 182
PspOMI	GGGCCC	1 cut(s)	162
PspPI	GGNCC	8 cut(s)	112, 150, 162, 163, 355, 367, 399, 450
PstNI	CAGNNNCTG	2 cut(s)	172, 510
PvuII	CAGCTG	1 cut(s)	169
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
Rsr2I	CGGWCCG	1 cut(s)	399
RsrII	CGGWCCG	1 cut(s)	399
SacI	GAGCTC	1 cut(s)	489
SapI	GCTCTTC	1 cut(s)	104
SaqAI	TTAA	1 cut(s)	435
SatI	GCNGC	3 cut(s)	170, 173, 268
Sau3AI	GATC	3 cut(s)	207, 228, 306
Sau96I	GGNCC	8 cut(s)	112, 150, 162, 163, 355, 367, 399, 450
SchI	GAGTC	2 cut(s)	181, 470
ScrFI	CCNGG	6 cut(s)	160, 161, 177, 178, 212, 344
SduI	GDGCHC	2 cut(s)	166, 489
Sfr274I	CTCGAG	1 cut(s)	128
SinI	GGWCC	3 cut(s)	355, 367, 399
SlaI	CTCGAG	1 cut(s)	128
SmaI	CCCGGG	2 cut(s)	161, 178
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	2 cut(s)	215, 322
SsiI	CCGC	7 cut(s)	79, 140, 192, 257, 389, 402, 456
SstI	GAGCTC	1 cut(s)	489
StyD4I	CCNGG	6 cut(s)	158, 159, 175, 176, 210, 342
TaaI	ACNGT	3 cut(s)	359, 494, 506
TaiI	ACGT	1 cut(s)	386
TaqI	TCGA	3 cut(s)	129, 291, 439
TasI	AATT	2 cut(s)	215, 322
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TscAI	CASTG	2 cut(s)	18, 304
TseI	GCWGC	3 cut(s)	169, 172, 267
TspDTI	ATGAA	1 cut(s)	64
TspMI	CCCGGG	2 cut(s)	159, 176
TspRI	CASTG	2 cut(s)	18, 304
Van91I	CCANNNNNTGG	1 cut(s)	109
VpaK11BI	GGWCC	3 cut(s)	355, 367, 399
XapI	RAATTY	1 cut(s)	215
XhoI	CTCGAG	1 cut(s)	128
XmaI	CCCGGG	2 cut(s)	159, 176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.