Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0005870

Physical Location & Seq

Genomic Coordinates Reverse (-)

12966183 .. 12966903

Gene Structure 721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g10350.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGCCATTATACACATCCCTCCTCCACTCTCCATGTCCCCTCTCTCACTCTTCCCCTCACTTCCTCTCTCTCTTTCTCTCTCTAGAGAACACAGAGAAACTAAACAAAAACCCATTTCATATCTCCGAACTCCATAACCGAATCACAACCCAAAACCTCAAAGTTCGAAGCTTTTTAATGGGGTTCCCAGTTGGGTACACAGAGATTCTGCTTCCAAAGCTCTTCATCCAAACACTCTCTCTGCTGTGTCTAATCCGAAAACTCATCTCAGCCTTCTTCTCCCTGCTGGGTCTCCAATATTTCATCGAACAGGACAATGCCCGGTCCGACCCGCCGGCCCGATTCCCGGAGTTCTACTCCGTCTCCGCGGTTCTGATCCGGGAAATCCTGCCGCTGGCAAAATTCTCGGACCTGGTGGACCCGCCGGAGTCATGTGCCGTGTGCCTGTACGAGTTCGAGGGCGAGGACGAGATACGACGGCTCACGAATTGTCGTCACGTCTTCCACAAAGGGTGCGTGGACCGGTGGGTCGGGTACGACCAGAAGACATGCCCGCTGTGTCGTGCGCCGTTCATATCGGAGGATATGCAGGGCGATTTCAATGAGAGGCTTTGGGCCGCTACTGGGATCCCTGATTTTTACGGTGATTATTCTCACACTAATCTTGGCTTTGAATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0046686 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

227

Amino Acids

25.97

Weight (kDa)

5.74

Isoelectric Point (pI)

53.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61460
fragaria_vesca	FvH4_5g02880 FvH4_7g14900
malus_domestica	MD01G1067800.v1.1 MD06G1088300.v1.1 MD07G1133100.v1.1 MD14G1109400.v1.1
prunus_persica	Prupe.2G174100_v2.0.a1 Prupe.5G104300_v2.0.a1
pyrus_communis	pycom14g10350
rosa_chinensis	RchiOBHm_Chr1g0356851 RchiOBHm_Chr7g0197001
rosa_laevigata	RLG00000003966 RLG00000028076
rosa_multiflora	Rmu_sc0003248.1_g000003
rosa_roxburghii	Rroxscaffold_3G00258740 Rroxscaffold_4G00299260
rosa_rugosa	Rorug07G0037000
rosa_samantha	Rh1AG266300 Rh1BG233700 Rh1CG249800 Rh1DG261100 Rh7AG162000 Rh7BG163900 Rh7CG170100 Rh7DG163200
rosa_wichuraiana	Rw1G023530 Rw7G014140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	527
AccII	CGCG	1 cut(s)	368
AciI	CCGC	7 cut(s)	332, 366, 368, 392, 422, 554, 618
AclWI	GGATC	3 cut(s)	370, 622, 635
AcsI	RAATTY	1 cut(s)	401
AfaI	GTAC	3 cut(s)	197, 449, 536
AfiI	CCNNNNNNNGG	3 cut(s)	346, 394, 624
AgeI	ACCGGT	1 cut(s)	522
AgsI	TTSAA	2 cut(s)	601, 674
AjiI	CACGTC	1 cut(s)	499
AjnI	CCWGG	1 cut(s)	411
AluBI	AGCT	2 cut(s)	171, 220
AluI	AGCT	2 cut(s)	171, 220
Alw26I	GTCTC	2 cut(s)	296, 367
AlwI	GGATC	3 cut(s)	370, 622, 635
AoxI	GGCC	2 cut(s)	336, 615
ApoI	RAATTY	1 cut(s)	401
AsiGI	ACCGGT	1 cut(s)	522
AspLEI	GCGC	1 cut(s)	568
AspS9I	GGNCC	6 cut(s)	324, 337, 409, 418, 520, 615
AsuC2I	CCSGG	3 cut(s)	322, 347, 380
AsuHPI	GGTGA	1 cut(s)	656
AsuII	TTCGAA	1 cut(s)	166
AvaII	GGWCC	4 cut(s)	324, 409, 418, 520
BamHI	GGATCC	1 cut(s)	627
BbsI	GAAGAC	2 cut(s)	493, 551
BceAI	ACGGC	3 cut(s)	422, 494, 553
BcgI	CGANNNNNNTGC	2 cut(s)	387, 421
BciT130I	CCWGG	1 cut(s)	413
BcnI	CCSGG	3 cut(s)	322, 347, 380
BcoDI	GTCTC	2 cut(s)	296, 367
BfaI	CTAG	1 cut(s)	83
BisI	GCNGC	2 cut(s)	392, 618
BlsI	GCNGC	2 cut(s)	393, 619
Bme1390I	CCNGG	4 cut(s)	322, 347, 380, 413
Bme18I	GGWCC	4 cut(s)	324, 409, 418, 520
BmgBI	CACGTC	1 cut(s)	499
BmgT120I	GGNCC	6 cut(s)	324, 337, 409, 418, 520, 615
BmiI	GGNNCC	3 cut(s)	185, 420, 629
BmrFI	CCNGG	4 cut(s)	322, 347, 380, 413
BmrI	ACTGGG	2 cut(s)	182, 633
BmuI	ACTGGG	2 cut(s)	182, 633
BpiI	GAAGAC	2 cut(s)	493, 551
BplI	GAGNNNNNCTC	2 cut(s)	341, 373
Bpu14I	TTCGAA	1 cut(s)	166
BpuMI	CCSGG	3 cut(s)	322, 347, 380
BsaI	GGTCTC	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	366
BsaWI	WCCGGW	1 cut(s)	522
BsaXI	ACNNNNNCTCC	2 cut(s)	347, 377
Bsc4I	CCNNNNNNNGG	3 cut(s)	346, 394, 624
Bse118I	RCCGGY	2 cut(s)	334, 522
Bse1I	ACTGG	2 cut(s)	188, 628
BseBI	CCWGG	1 cut(s)	413
BseDI	CCNNGG	1 cut(s)	366
BseGI	GGATG	2 cut(s)	14, 225
BseLI	CCNNNNNNNGG	3 cut(s)	346, 394, 624
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	2 cut(s)	188, 628
BseRI	GAGGAG	1 cut(s)	11
BseYI	CCCAGC	1 cut(s)	286
Bsh1236I	CGCG	1 cut(s)	368
BshFI	GGCC	2 cut(s)	338, 617
BshTI	ACCGGT	1 cut(s)	522
BsiSI	CCGG	6 cut(s)	322, 335, 347, 379, 425, 523
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	3 cut(s)	346, 394, 624
BsmAI	GTCTC	2 cut(s)	296, 367
BsmBI	CGTCTC	1 cut(s)	367
BsmFI	GGGAC	1 cut(s)	21
BsnI	GGCC	2 cut(s)	338, 617
Bso31I	GGTCTC	1 cut(s)	296
Bsp119I	TTCGAA	1 cut(s)	166
Bsp143I	GATC	2 cut(s)	375, 627
BspACI	CCGC	7 cut(s)	332, 366, 368, 392, 422, 554, 618
BspANI	GGCC	2 cut(s)	338, 617
BspCNI	CTCAG	1 cut(s)	281
BspFNI	CGCG	1 cut(s)	368
BspLI	GGNNCC	3 cut(s)	185, 420, 629
BspPI	GGATC	3 cut(s)	370, 622, 635
BspQI	GCTCTTC	1 cut(s)	227
BspT104I	TTCGAA	1 cut(s)	166
BspTNI	GGTCTC	1 cut(s)	296
BsrFI	RCCGGY	2 cut(s)	334, 522
BsrI	ACTGG	2 cut(s)	188, 628
BssAI	RCCGGY	2 cut(s)	334, 522
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	2 cut(s)	375, 627
Bst2UI	CCWGG	1 cut(s)	413
Bst4CI	ACNGT	1 cut(s)	644
Bst6I	CTCTTC	2 cut(s)	55, 227
BstBI	TTCGAA	1 cut(s)	166
BstC8I	GCNNGC	3 cut(s)	336, 396, 554
BstDEI	CTNAG	1 cut(s)	268
BstDSI	CCRYGG	1 cut(s)	366
BstF5I	GGATG	2 cut(s)	14, 225
BstFNI	CGCG	1 cut(s)	368
BstHHI	GCGC	1 cut(s)	568
BstKTI	GATC	2 cut(s)	378, 630
BstMAI	GTCTC	2 cut(s)	296, 367
BstMBI	GATC	2 cut(s)	375, 627
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstNI	CCWGG	1 cut(s)	413
BstNSI	RCATGY	1 cut(s)	552
BstSCI	CCNGG	4 cut(s)	320, 345, 378, 411
BstUI	CGCG	1 cut(s)	368
BstV2I	GAAGAC	2 cut(s)	493, 551
BstX2I	RGATCY	1 cut(s)	627
BstYI	RGATCY	1 cut(s)	627
BsuRI	GGCC	2 cut(s)	338, 617
BtgI	CCRYGG	1 cut(s)	366
BtrI	CACGTC	1 cut(s)	499
BtsCI	GGATG	2 cut(s)	14, 225
Cac8I	GCNNGC	3 cut(s)	336, 396, 554
CfoI	GCGC	1 cut(s)	568
Cfr10I	RCCGGY	2 cut(s)	334, 522
Cfr13I	GGNCC	6 cut(s)	324, 337, 409, 418, 520, 615
Cfr42I	CCGCGG	1 cut(s)	369
CpoI	CGGWCCG	1 cut(s)	324
CsiI	ACCWGGT	1 cut(s)	411
Csp6I	GTAC	3 cut(s)	196, 448, 535
CspAI	ACCGGT	1 cut(s)	522
CspI	CGGWCCG	1 cut(s)	324
CviAII	CATG	3 cut(s)	33, 432, 549
CviJI	RGCY	8 cut(s)	171, 220, 272, 338, 481, 610, 617, 669
CviKI_1	RGCY	8 cut(s)	171, 220, 272, 338, 481, 610, 617, 669
CviQI	GTAC	3 cut(s)	196, 448, 535
DdeI	CTNAG	1 cut(s)	268
DpnI	GATC	2 cut(s)	377, 629
DpnII	GATC	2 cut(s)	375, 627
DrdI	GACNNNNNNGTC	1 cut(s)	527
DseDI	GACNNNNNNGTC	1 cut(s)	527
Eam1104I	CTCTTC	2 cut(s)	55, 227
EarI	CTCTTC	2 cut(s)	55, 227
Eco31I	GGTCTC	1 cut(s)	296
Eco47I	GGWCC	4 cut(s)	324, 409, 418, 520
EcoRII	CCWGG	1 cut(s)	411
Esp3I	CGTCTC	1 cut(s)	367
FaeI	CATG	3 cut(s)	36, 435, 552
FaiI	YATR	8 cut(s)	10, 34, 120, 135, 433, 550, 575, 587
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	3 cut(s)	32, 431, 548
FauI	CCCGC	3 cut(s)	339, 429, 561
Fnu4HI	GCNGC	2 cut(s)	392, 618
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	2 cut(s)	392, 618
FspBI	CTAG	1 cut(s)	83
GlaI	GCGC	1 cut(s)	567
GluI	GCNGC	2 cut(s)	392, 618
GsaI	CCCAGC	1 cut(s)	290
HaeIII	GGCC	2 cut(s)	338, 617
HapII	CCGG	6 cut(s)	322, 335, 347, 379, 425, 523
HhaI	GCGC	1 cut(s)	568
Hin1II	CATG	3 cut(s)	36, 435, 552
Hin6I	GCGC	1 cut(s)	566
HinP1I	GCGC	1 cut(s)	566
HindIII	AAGCTT	1 cut(s)	169
HinfI	GANTC	4 cut(s)	141, 205, 342, 428
HpaII	CCGG	6 cut(s)	322, 335, 347, 379, 425, 523
HphI	GGTGA	1 cut(s)	656
Hpy166II	GTNNAC	3 cut(s)	198, 418, 520
Hpy188I	TCNGA	6 cut(s)	127, 257, 328, 375, 409, 580
Hpy188III	TCNNGA	2 cut(s)	83, 484
Hpy8I	GTNNAC	3 cut(s)	198, 418, 520
Hpy99I	CGWCG	1 cut(s)	480
HpyAV	CCTTC	1 cut(s)	283
HpyCH4III	ACNGT	1 cut(s)	644
HpyCH4IV	ACGT	1 cut(s)	498
HpyCH4V	TGCA	1 cut(s)	589
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
HpyF3I	CTNAG	1 cut(s)	268
HpySE526I	ACGT	1 cut(s)	498
Hsp92II	CATG	3 cut(s)	36, 435, 552
HspAI	GCGC	1 cut(s)	566
KroI	GCCGGC	1 cut(s)	334
KroNI	GCCGGC	1 cut(s)	336
KspI	CCGCGG	1 cut(s)	369
Kzo9I	GATC	2 cut(s)	375, 627
LguI	GCTCTTC	1 cut(s)	227
MabI	ACCWGGT	1 cut(s)	411
MaeI	CTAG	1 cut(s)	83
MaeII	ACGT	1 cut(s)	498
MaeIII	GTNAC	1 cut(s)	494
MalI	GATC	2 cut(s)	377, 629
MboI	GATC	2 cut(s)	375, 627
MboII	GAAGA	5 cut(s)	42, 214, 268, 493, 556
MflI	RGATCY	1 cut(s)	627
MluCI	AATT	3 cut(s)	401, 487, 674
MlyI	GAGTC	1 cut(s)	437
MmeI	TCCRAC	1 cut(s)	351
MroNI	GCCGGC	1 cut(s)	334
MseI	TTAA	1 cut(s)	176
MspA1I	CMGCKG	3 cut(s)	368, 394, 556
MspI	CCGG	6 cut(s)	322, 335, 347, 379, 425, 523
MspR9I	CCNGG	4 cut(s)	322, 347, 380, 413
MvaI	CCWGG	1 cut(s)	413
MvnI	CGCG	1 cut(s)	368
MwoI	GCNNNNNNNGC	1 cut(s)	217
NaeI	GCCGGC	1 cut(s)	336
NciI	CCSGG	3 cut(s)	322, 347, 380
NdeII	GATC	2 cut(s)	375, 627
NgoMIV	GCCGGC	1 cut(s)	334
NlaIII	CATG	3 cut(s)	36, 435, 552
NlaIV	GGNNCC	3 cut(s)	185, 420, 629
NmuCI	GTSAC	1 cut(s)	494
NspI	RCATGY	1 cut(s)	552
NspV	TTCGAA	1 cut(s)	166
PciSI	GCTCTTC	1 cut(s)	227
PdiI	GCCGGC	1 cut(s)	336
PfeI	GAWTC	3 cut(s)	141, 205, 342
PfoI	TCCNGGA	2 cut(s)	345, 378
PinAI	ACCGGT	1 cut(s)	522
PkrI	GCNGC	2 cut(s)	393, 619
PleI	GAGTC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	436
Psp6I	CCWGG	1 cut(s)	411
PspFI	CCCAGC	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	411
PspN4I	GGNNCC	3 cut(s)	185, 420, 629
PspPI	GGNCC	6 cut(s)	324, 337, 409, 418, 520, 615
PsuI	RGATCY	1 cut(s)	627
RsaI	GTAC	3 cut(s)	197, 449, 536
RsaNI	GTAC	3 cut(s)	196, 448, 535
Rsr2I	CGGWCCG	1 cut(s)	324
RsrII	CGGWCCG	1 cut(s)	324
SacII	CCGCGG	1 cut(s)	369
SapI	GCTCTTC	1 cut(s)	227
SaqAI	TTAA	1 cut(s)	176
SatI	GCNGC	2 cut(s)	392, 618
Sau3AI	GATC	2 cut(s)	375, 627
Sau96I	GGNCC	6 cut(s)	324, 337, 409, 418, 520, 615
SchI	GAGTC	1 cut(s)	437
ScrFI	CCNGG	4 cut(s)	322, 347, 380, 413
SetI	ASST	5 cut(s)	159, 173, 222, 414, 501
SexAI	ACCWGGT	1 cut(s)	411
Sfr303I	CCGCGG	1 cut(s)	369
SfuI	TTCGAA	1 cut(s)	166
SgrBI	CCGCGG	1 cut(s)	369
SinI	GGWCC	4 cut(s)	324, 409, 418, 520
Sse9I	AATT	3 cut(s)	401, 487, 674
SsiI	CCGC	7 cut(s)	332, 366, 368, 392, 422, 554, 618
SspI	AATATT	1 cut(s)	299
SspMI	CTAG	1 cut(s)	83
StyD4I	CCNGG	4 cut(s)	320, 345, 378, 411
TaaI	ACNGT	1 cut(s)	644
TaiI	ACGT	1 cut(s)	501
TaqI	TCGA	3 cut(s)	166, 306, 456
TasI	AATT	3 cut(s)	401, 487, 674
TauI	GCSGC	2 cut(s)	394, 620
TfiI	GAWTC	3 cut(s)	141, 205, 342
Tru1I	TTAA	1 cut(s)	176
Tru9I	TTAA	1 cut(s)	176
TseFI	GTSAC	1 cut(s)	494
Tsp45I	GTSAC	1 cut(s)	494
TspDTI	ATGAA	4 cut(s)	107, 214, 292, 562
TspGWI	ACGGA	1 cut(s)	349
VpaK11BI	GGWCC	4 cut(s)	324, 409, 418, 520
XapI	RAATTY	1 cut(s)	401
XbaI	TCTAGA	1 cut(s)	82
XceI	RCATGY	1 cut(s)	552
XspI	CTAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.