Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005870

Physical Location & Seq

Genomic Coordinates Reverse (-)

54814763 .. 54815269

Gene Structure 507 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003966

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGGGTTCCCAGCAGGCTACACAGAGCTTCTGCTCCCCAAGCTTTTCCTCAGCACACTTTCCCTTCTGGGTTTCATCCGTAAGCTCATCACCACCCTCTTCTCGTTACTGGGTCTCCAAGATTTCATCGAACCCGACAATGCCTGGTCCGACCCACCCCACCCGACCCGGATCCCCGAATTCCAGTCCGTCTCCGCCTTGCTGATCCGCGAACTCCTCCCCGTCGTCAAGTTCTCGGACCTGGTCGACCCGCCCGAGTCCTGCGCCGTCTGCCTCTACGAGTTCGAGGCCGACGACGACGTACGACGCTTGACCAACTGTCGTCACATCTTCCACAAAGGCTGCGTGGACCGGTGGGTCGGCTACGACCAGAAGACGTGCCCGCTTTGCCGGACGCCGTTCATACCGGAAGATATGCAGGGGGCTTTCAACGAGAGGCTTTGGGAGGCTTCCGGCATCCCTGATTTTTACGGCGACTTTCCACATGCTATTGGTTATGATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0046686 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

169

Amino Acids

19.14

Weight (kDa)

4.7

Isoelectric Point (pI)

44.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	87 - 131	1.6e-13	Ring finger domain
zf-RING_11	PF17123	88 - 116	1.2e-08	RING-like zinc finger
zf-RING_5	PF14634	88 - 132	1.3e-07	zinc-RING finger domain
zf-C3HC4	PF00097	88 - 130	2.4e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	88 - 130	1.7e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	88 - 128	4.9e-06	RING-type zinc-finger
zf-rbx1	PF12678	91 - 131	1.1e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61460
fragaria_vesca	FvH4_5g02880 FvH4_7g14900
malus_domestica	MD01G1067800.v1.1 MD06G1088300.v1.1 MD07G1133100.v1.1 MD14G1109400.v1.1
prunus_persica	Prupe.2G174100_v2.0.a1 Prupe.5G104300_v2.0.a1
pyrus_communis	pycom14g10350
rosa_chinensis	RchiOBHm_Chr1g0356851 RchiOBHm_Chr7g0197001
rosa_laevigata	RLG00000003966 RLG00000028076
rosa_multiflora	Rmu_sc0003248.1_g000003
rosa_roxburghii	Rroxscaffold_3G00258740 Rroxscaffold_4G00299260
rosa_rugosa	Rorug07G0037000
rosa_samantha	Rh1AG266300 Rh1BG233700 Rh1CG249800 Rh1DG261100 Rh7AG162000 Rh7BG163900 Rh7CG170100 Rh7DG163200
rosa_wichuraiana	Rw1G023530 Rw7G014140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	356
AccI	GTMKAC	1 cut(s)	246
AccII	CGCG	1 cut(s)	210
AciI	CCGC	4 cut(s)	195, 208, 251, 383
AclWI	GGATC	3 cut(s)	166, 179, 199
AcsI	RAATTY	1 cut(s)	179
AcyI	GRCGYC	1 cut(s)	395
AfaI	GTAC	1 cut(s)	303
AgeI	ACCGGT	1 cut(s)	351
AgsI	TTSAA	1 cut(s)	430
AhdI	GACNNNNNGTC	1 cut(s)	318
AjiI	CACGTC	1 cut(s)	378
AjnI	CCWGG	2 cut(s)	143, 240
AluBI	AGCT	3 cut(s)	28, 43, 85
AluI	AGCT	3 cut(s)	28, 43, 85
Alw26I	GTCTC	2 cut(s)	119, 196
AlwI	GGATC	3 cut(s)	166, 179, 199
Ama87I	CYCGRG	1 cut(s)	254
AoxI	GGCC	1 cut(s)	288
ApeKI	GCWGC	1 cut(s)	342
ApoI	RAATTY	1 cut(s)	179
AsiGI	ACCGGT	1 cut(s)	351
AspLEI	GCGC	1 cut(s)	266
AspS9I	GGNCC	3 cut(s)	147, 238, 349
AsuC2I	CCSGG	1 cut(s)	169
AsuHPI	GGTGA	1 cut(s)	82
AvaI	CYCGRG	1 cut(s)	254
AvaII	GGWCC	3 cut(s)	147, 238, 349
BaeGI	GKGCMC	1 cut(s)	383
BamHI	GGATCC	1 cut(s)	171
BbsI	GAAGAC	1 cut(s)	380
BbvCI	CCTCAGC	1 cut(s)	50
BbvI	GCAGC	1 cut(s)	329
BceAI	ACGGC	3 cut(s)	251, 382, 487
BciT130I	CCWGG	2 cut(s)	145, 242
BcnI	CCSGG	1 cut(s)	169
BcoDI	GTCTC	2 cut(s)	119, 196
BisI	GCNGC	1 cut(s)	343
BlsI	GCNGC	1 cut(s)	344
Bme1390I	CCNGG	3 cut(s)	145, 169, 242
Bme18I	GGWCC	3 cut(s)	147, 238, 349
BmeRI	GACNNNNNGTC	1 cut(s)	318
BmeT110I	CYCGRG	1 cut(s)	254
BmgBI	CACGTC	1 cut(s)	378
BmgT120I	GGNCC	3 cut(s)	147, 238, 349
BmiI	GGNNCC	2 cut(s)	8, 173
BmrFI	CCNGG	3 cut(s)	145, 169, 242
BmrI	ACTGGG	1 cut(s)	119
BmsI	GCATC	1 cut(s)	465
BmuI	ACTGGG	1 cut(s)	119
BpiI	GAAGAC	1 cut(s)	380
Bpu10I	CCTNAGC	1 cut(s)	50
BpuMI	CCSGG	1 cut(s)	169
BsaHI	GRCGYC	1 cut(s)	395
BsaI	GGTCTC	1 cut(s)	119
BsaWI	WCCGGW	2 cut(s)	351, 406
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bse118I	RCCGGY	1 cut(s)	351
Bse1I	ACTGG	2 cut(s)	114, 184
BseBI	CCWGG	2 cut(s)	145, 242
BseGI	GGATG	2 cut(s)	75, 456
BseMII	CTCAG	1 cut(s)	64
BseNI	ACTGG	2 cut(s)	114, 184
BseRI	GAGGAG	1 cut(s)	206
BseSI	GKGCMC	1 cut(s)	383
BseXI	GCAGC	1 cut(s)	329
BseYI	CCCAGC	1 cut(s)	10
Bsh1236I	CGCG	1 cut(s)	210
BshFI	GGCC	1 cut(s)	290
BshTI	ACCGGT	1 cut(s)	351
BsiHKCI	CYCGRG	1 cut(s)	254
BsiSI	CCGG	5 cut(s)	169, 352, 391, 407, 453
BsiWI	CGTACG	1 cut(s)	301
BsmAI	GTCTC	2 cut(s)	119, 196
BsmBI	CGTCTC	1 cut(s)	196
BsnI	GGCC	1 cut(s)	290
Bso31I	GGTCTC	1 cut(s)	119
BsoBI	CYCGRG	1 cut(s)	254
Bsp1286I	GDGCHC	1 cut(s)	383
Bsp143I	GATC	2 cut(s)	171, 204
BspACI	CCGC	4 cut(s)	195, 208, 251, 383
BspANI	GGCC	1 cut(s)	290
BspCNI	CTCAG	1 cut(s)	63
BspFNI	CGCG	1 cut(s)	210
BspLI	GGNNCC	2 cut(s)	8, 173
BspPI	GGATC	3 cut(s)	166, 179, 199
BspTNI	GGTCTC	1 cut(s)	119
BsrFI	RCCGGY	1 cut(s)	351
BsrI	ACTGG	2 cut(s)	114, 184
BssAI	RCCGGY	1 cut(s)	351
BssMI	GATC	2 cut(s)	171, 204
BssNI	GRCGYC	1 cut(s)	395
Bst2UI	CCWGG	2 cut(s)	145, 242
Bst4CI	ACNGT	1 cut(s)	320
Bst6I	CTCTTC	1 cut(s)	104
BstACI	GRCGYC	1 cut(s)	395
BstC8I	GCNNGC	2 cut(s)	16, 383
BstDEI	CTNAG	1 cut(s)	50
BstF5I	GGATG	2 cut(s)	75, 456
BstFNI	CGCG	1 cut(s)	210
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	2 cut(s)	174, 207
BstMAI	GTCTC	2 cut(s)	119, 196
BstMBI	GATC	2 cut(s)	171, 204
BstMWI	GCNNNNNNNGC	3 cut(s)	40, 270, 387
BstNI	CCWGG	2 cut(s)	145, 242
BstNSI	RCATGY	1 cut(s)	488
BstSCI	CCNGG	3 cut(s)	143, 167, 240
BstSLI	GKGCMC	1 cut(s)	383
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	329
BstV2I	GAAGAC	1 cut(s)	380
BstX2I	RGATCY	1 cut(s)	171
BstYI	RGATCY	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	290
BtrI	CACGTC	1 cut(s)	378
BtsCI	GGATG	2 cut(s)	75, 456
Cac8I	GCNNGC	2 cut(s)	16, 383
CfoI	GCGC	1 cut(s)	266
Cfr10I	RCCGGY	1 cut(s)	351
Cfr13I	GGNCC	3 cut(s)	147, 238, 349
CseI	GACGC	2 cut(s)	315, 403
CsiI	ACCWGGT	1 cut(s)	240
Csp6I	GTAC	1 cut(s)	302
CspAI	ACCGGT	1 cut(s)	351
CviAII	CATG	1 cut(s)	485
CviQI	GTAC	1 cut(s)	302
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	2 cut(s)	173, 206
DpnII	GATC	2 cut(s)	171, 204
DrdI	GACNNNNNNGTC	1 cut(s)	356
DriI	GACNNNNNGTC	1 cut(s)	318
DseDI	GACNNNNNNGTC	1 cut(s)	356
Eam1104I	CTCTTC	1 cut(s)	104
Eam1105I	GACNNNNNGTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	104
EciI	GGCGGA	1 cut(s)	184
Eco31I	GGTCTC	1 cut(s)	119
Eco47I	GGWCC	3 cut(s)	147, 238, 349
Eco88I	CYCGRG	1 cut(s)	254
EcoRI	GAATTC	1 cut(s)	179
EcoRII	CCWGG	2 cut(s)	143, 240
Esp3I	CGTCTC	1 cut(s)	196
FaeI	CATG	1 cut(s)	488
FaiI	YATR	4 cut(s)	404, 416, 486, 498
FatI	CATG	1 cut(s)	484
FauI	CCCGC	2 cut(s)	258, 390
FblI	GTMKAC	1 cut(s)	246
Fnu4HI	GCNGC	1 cut(s)	343
FokI	GGATG	2 cut(s)	62, 443
Fsp4HI	GCNGC	1 cut(s)	343
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	1 cut(s)	343
GsaI	CCCAGC	1 cut(s)	14
HaeIII	GGCC	1 cut(s)	290
HapII	CCGG	5 cut(s)	169, 352, 391, 407, 453
HgaI	GACGC	2 cut(s)	315, 403
HhaI	GCGC	1 cut(s)	266
Hin1I	GRCGYC	1 cut(s)	395
Hin1II	CATG	1 cut(s)	488
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	1 cut(s)	257
HpaII	CCGG	5 cut(s)	169, 352, 391, 407, 453
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	2 cut(s)	247, 349
Hpy188I	TCNGA	2 cut(s)	151, 238
Hpy8I	GTNNAC	2 cut(s)	247, 349
Hpy99I	CGWCG	5 cut(s)	227, 296, 299, 302, 309
HpyAV	CCTTC	1 cut(s)	74
HpyCH4III	ACNGT	1 cut(s)	320
HpyCH4IV	ACGT	2 cut(s)	300, 377
HpyCH4V	TGCA	1 cut(s)	418
HpyF10VI	GCNNNNNNNGC	3 cut(s)	40, 270, 387
HpyF3I	CTNAG	1 cut(s)	50
HpySE526I	ACGT	2 cut(s)	300, 377
Hsp92I	GRCGYC	1 cut(s)	395
Hsp92II	CATG	1 cut(s)	488
HspAI	GCGC	1 cut(s)	264
Kzo9I	GATC	2 cut(s)	171, 204
LmnI	GCTCC	1 cut(s)	39
Lsp1109I	GCAGC	1 cut(s)	329
LweI	GCATC	1 cut(s)	465
MabI	ACCWGGT	1 cut(s)	240
MaeII	ACGT	2 cut(s)	300, 377
MaeIII	GTNAC	2 cut(s)	105, 323
MalI	GATC	2 cut(s)	173, 206
MboI	GATC	2 cut(s)	171, 204
MboII	GAAGA	4 cut(s)	91, 322, 385, 422
MflI	RGATCY	1 cut(s)	171
MhlI	GDGCHC	1 cut(s)	383
MluCI	AATT	1 cut(s)	179
MlyI	GAGTC	1 cut(s)	266
MmeI	TCCRAC	1 cut(s)	174
MnlI	CCTC	7 cut(s)	59, 107, 227, 280, 284, 429, 439
MspI	CCGG	5 cut(s)	169, 352, 391, 407, 453
MspR9I	CCNGG	3 cut(s)	145, 169, 242
MvaI	CCWGG	2 cut(s)	145, 242
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	3 cut(s)	40, 270, 387
NciI	CCSGG	1 cut(s)	169
NdeII	GATC	2 cut(s)	171, 204
NlaIII	CATG	1 cut(s)	488
NlaIV	GGNNCC	2 cut(s)	8, 173
NmuCI	GTSAC	1 cut(s)	323
NspI	RCATGY	1 cut(s)	488
PcsI	WCGNNNNNNNCGW	2 cut(s)	252, 291
Pfl23II	CGTACG	1 cut(s)	301
PflFI	GACNNNGTC	1 cut(s)	242
PinAI	ACCGGT	1 cut(s)	351
PkrI	GCNGC	1 cut(s)	344
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
Psp6I	CCWGG	2 cut(s)	143, 240
PspFI	CCCAGC	1 cut(s)	10
PspGI	CCWGG	2 cut(s)	143, 240
PspLI	CGTACG	1 cut(s)	301
PspN4I	GGNNCC	2 cut(s)	8, 173
PspPI	GGNCC	3 cut(s)	147, 238, 349
PsuI	RGATCY	1 cut(s)	171
PsyI	GACNNNGTC	1 cut(s)	242
RsaI	GTAC	1 cut(s)	303
RsaNI	GTAC	1 cut(s)	302
SalI	GTCGAC	1 cut(s)	245
SatI	GCNGC	1 cut(s)	343
Sau3AI	GATC	2 cut(s)	171, 204
Sau96I	GGNCC	3 cut(s)	147, 238, 349
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	3 cut(s)	145, 169, 242
SduI	GDGCHC	1 cut(s)	383
SetI	ASST	6 cut(s)	30, 45, 87, 243, 303, 380
SexAI	ACCWGGT	1 cut(s)	240
SfaNI	GCATC	1 cut(s)	465
SinI	GGWCC	3 cut(s)	147, 238, 349
Sse9I	AATT	1 cut(s)	179
SsiI	CCGC	4 cut(s)	195, 208, 251, 383
StyD4I	CCNGG	3 cut(s)	143, 167, 240
TaaI	ACNGT	1 cut(s)	320
TaiI	ACGT	2 cut(s)	303, 380
TaqI	TCGA	3 cut(s)	129, 246, 285
TasI	AATT	1 cut(s)	179
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	1 cut(s)	342
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	3 cut(s)	64, 115, 391
TspGWI	ACGGA	2 cut(s)	68, 178
Tth111I	GACNNNGTC	1 cut(s)	242
VpaK11BI	GGWCC	3 cut(s)	147, 238, 349
XapI	RAATTY	1 cut(s)	179
XceI	RCATGY	1 cut(s)	488
XmiI	GTMKAC	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.