Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0005870

Physical Location & Seq

Genomic Coordinates Reverse (-)

11103629 .. 11104167

Gene Structure 539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G104300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGGTTTTCCTGTGGGCTACACAGAGCTCCTCCTCCCAAAGCTCTTCATCCACACTCTCTCTCTTCTGGGTCTCATCCGAAAACTCATCTCCACCTTCTTCTCCTTACTGGGTCTCCAAGATTTCATCCAACCAGACAATGCCTGGGCCGACCCGCCCGCCCCATTCCCCGAGTTCCACTCGGCGTCGGCGGTTCTGATCCGCGAAATCCTGCCCGTCGTCAAGTTCTCGGACCTGGTCGACCCGCCCGAGTCGTGCGCCGTCTGCCTGTACGAGTTCGAGAGCGAGGACGAGATACGACGCCTCACGAATTGTCGTCACATCTTCCACAAAGGGTGCGTGGACCGGTGGGTCGGGTACGACCAGAAGACGTGCCCGCTGTGTCGTACGCCGTTCATATCGGACGATATGCAGGGCGATTTCAATGAGAGGCTTTGGGCGGCTTCTGGGATCCCCGATTTTTACGACCATTTTTATCCCTATACTGATAATGGTTTAGATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0046686 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

169

Amino Acids

19.25

Weight (kDa)

4.68

Isoelectric Point (pI)

48.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61460
fragaria_vesca	FvH4_5g02880 FvH4_7g14900
malus_domestica	MD01G1067800.v1.1 MD06G1088300.v1.1 MD07G1133100.v1.1 MD14G1109400.v1.1
prunus_persica	Prupe.2G174100_v2.0.a1 Prupe.5G104300_v2.0.a1
pyrus_communis	pycom14g10350
rosa_chinensis	RchiOBHm_Chr1g0356851 RchiOBHm_Chr7g0197001
rosa_laevigata	RLG00000003966 RLG00000028076
rosa_multiflora	Rmu_sc0003248.1_g000003
rosa_roxburghii	Rroxscaffold_3G00258740 Rroxscaffold_4G00299260
rosa_rugosa	Rorug07G0037000
rosa_samantha	Rh1AG266300 Rh1BG233700 Rh1CG249800 Rh1DG261100 Rh7AG162000 Rh7BG163900 Rh7CG170100 Rh7DG163200
rosa_wichuraiana	Rw1G023530 Rw7G014140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	350
AccI	GTMKAC	1 cut(s)	240
AccII	CGCG	1 cut(s)	204
AciI	CCGC	7 cut(s)	155, 159, 191, 202, 245, 377, 440
AclWI	GGATC	3 cut(s)	193, 445, 458
AcyI	GRCGYC	2 cut(s)	185, 301
AfaI	GTAC	3 cut(s)	272, 359, 388
AgeI	ACCGGT	1 cut(s)	345
AgsI	TTSAA	1 cut(s)	424
AjiI	CACGTC	1 cut(s)	372
AjnI	CCWGG	2 cut(s)	143, 234
AluBI	AGCT	2 cut(s)	28, 43
AluI	AGCT	2 cut(s)	28, 43
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	2 cut(s)	77, 119
AlwI	GGATC	3 cut(s)	193, 445, 458
Ama87I	CYCGRG	2 cut(s)	170, 248
AoxI	GGCC	1 cut(s)	147
AsiGI	ACCGGT	1 cut(s)	345
AspLEI	GCGC	1 cut(s)	260
AspS9I	GGNCC	3 cut(s)	147, 232, 343
AvaI	CYCGRG	2 cut(s)	170, 248
AvaII	GGWCC	2 cut(s)	232, 343
BaeGI	GKGCMC	1 cut(s)	377
BamHI	GGATCC	1 cut(s)	450
BanII	GRGCYC	1 cut(s)	30
BbsI	GAAGAC	1 cut(s)	374
Bbv12I	GWGCWC	1 cut(s)	30
BceAI	ACGGC	2 cut(s)	245, 376
BciT130I	CCWGG	2 cut(s)	145, 236
BcoDI	GTCTC	2 cut(s)	77, 119
BisI	GCNGC	1 cut(s)	441
BlsI	GCNGC	1 cut(s)	442
Bme1390I	CCNGG	2 cut(s)	145, 236
Bme18I	GGWCC	2 cut(s)	232, 343
BmeT110I	CYCGRG	2 cut(s)	170, 248
BmgBI	CACGTC	1 cut(s)	372
BmgT120I	GGNCC	3 cut(s)	147, 232, 343
BmiI	GGNNCC	1 cut(s)	452
BmrFI	CCNGG	2 cut(s)	145, 236
BmrI	ACTGGG	1 cut(s)	119
BmuI	ACTGGG	1 cut(s)	119
BpiI	GAAGAC	1 cut(s)	374
BplI	GAGNNNNNCTC	2 cut(s)	164, 196
BsaHI	GRCGYC	2 cut(s)	185, 301
BsaI	GGTCTC	2 cut(s)	77, 119
BsaJI	CCNNGG	1 cut(s)	144
BsaWI	WCCGGW	1 cut(s)	345
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bse118I	RCCGGY	1 cut(s)	345
Bse1I	ACTGG	1 cut(s)	114
BseBI	CCWGG	2 cut(s)	145, 236
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	3 cut(s)	48, 75, 126
BseNI	ACTGG	1 cut(s)	114
BseRI	GAGGAG	2 cut(s)	20, 23
BseSI	GKGCMC	1 cut(s)	377
Bsh1236I	CGCG	1 cut(s)	204
BshFI	GGCC	1 cut(s)	149
BshTI	ACCGGT	1 cut(s)	345
BsiHKAI	GWGCWC	1 cut(s)	30
BsiHKCI	CYCGRG	2 cut(s)	170, 248
BsiSI	CCGG	1 cut(s)	346
BsiWI	CGTACG	1 cut(s)	386
BsmAI	GTCTC	2 cut(s)	77, 119
BsnI	GGCC	1 cut(s)	149
Bso31I	GGTCTC	2 cut(s)	77, 119
BsoBI	CYCGRG	2 cut(s)	170, 248
Bsp1286I	GDGCHC	2 cut(s)	30, 377
Bsp143I	GATC	2 cut(s)	198, 450
BspACI	CCGC	7 cut(s)	155, 159, 191, 202, 245, 377, 440
BspANI	GGCC	1 cut(s)	149
BspFNI	CGCG	1 cut(s)	204
BspLI	GGNNCC	1 cut(s)	452
BspPI	GGATC	3 cut(s)	193, 445, 458
BspQI	GCTCTTC	1 cut(s)	50
BspTNI	GGTCTC	2 cut(s)	77, 119
BsrFI	RCCGGY	1 cut(s)	345
BsrI	ACTGG	1 cut(s)	114
BssAI	RCCGGY	1 cut(s)	345
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	2 cut(s)	198, 450
BssNI	GRCGYC	2 cut(s)	185, 301
Bst2UI	CCWGG	2 cut(s)	145, 236
Bst6I	CTCTTC	2 cut(s)	50, 69
BstACI	GRCGYC	2 cut(s)	185, 301
BstC8I	GCNNGC	2 cut(s)	159, 377
BstF5I	GGATG	3 cut(s)	48, 75, 126
BstFNI	CGCG	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	2 cut(s)	201, 453
BstMAI	GTCTC	2 cut(s)	77, 119
BstMBI	GATC	2 cut(s)	198, 450
BstMWI	GCNNNNNNNGC	1 cut(s)	264
BstNI	CCWGG	2 cut(s)	145, 236
BstSCI	CCNGG	2 cut(s)	143, 234
BstSLI	GKGCMC	1 cut(s)	377
BstUI	CGCG	1 cut(s)	204
BstV2I	GAAGAC	1 cut(s)	374
BstX2I	RGATCY	1 cut(s)	450
BstYI	RGATCY	1 cut(s)	450
BsuRI	GGCC	1 cut(s)	149
BtrI	CACGTC	1 cut(s)	372
BtsCI	GGATG	3 cut(s)	48, 75, 126
Cac8I	GCNNGC	2 cut(s)	159, 377
CfoI	GCGC	1 cut(s)	260
Cfr10I	RCCGGY	1 cut(s)	345
Cfr13I	GGNCC	3 cut(s)	147, 232, 343
CseI	GACGC	2 cut(s)	174, 309
CsiI	ACCWGGT	1 cut(s)	234
Csp6I	GTAC	3 cut(s)	271, 358, 387
CspAI	ACCGGT	1 cut(s)	345
CviJI	RGCY	6 cut(s)	18, 28, 43, 149, 433, 443
CviKI_1	RGCY	6 cut(s)	18, 28, 43, 149, 433, 443
CviQI	GTAC	3 cut(s)	271, 358, 387
DpnI	GATC	2 cut(s)	200, 452
DpnII	GATC	2 cut(s)	198, 450
DrdI	GACNNNNNNGTC	1 cut(s)	350
DseDI	GACNNNNNNGTC	1 cut(s)	350
Eam1104I	CTCTTC	2 cut(s)	50, 69
EarI	CTCTTC	2 cut(s)	50, 69
Ecl136II	GAGCTC	1 cut(s)	28
Eco24I	GRGCYC	1 cut(s)	30
Eco31I	GGTCTC	2 cut(s)	77, 119
Eco47I	GGWCC	2 cut(s)	232, 343
Eco53kI	GAGCTC	1 cut(s)	28
Eco88I	CYCGRG	2 cut(s)	170, 248
EcoICRI	GAGCTC	1 cut(s)	28
EcoRII	CCWGG	2 cut(s)	143, 234
EcoT38I	GRGCYC	1 cut(s)	30
FaiI	YATR	3 cut(s)	398, 410, 483
FauI	CCCGC	4 cut(s)	162, 166, 252, 384
FblI	GTMKAC	1 cut(s)	240
Fnu4HI	GCNGC	1 cut(s)	441
FokI	GGATG	3 cut(s)	35, 62, 113
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	1 cut(s)	441
GlaI	GCGC	1 cut(s)	259
GluI	GCNGC	1 cut(s)	441
HaeIII	GGCC	1 cut(s)	149
HapII	CCGG	1 cut(s)	346
HgaI	GACGC	2 cut(s)	174, 309
HhaI	GCGC	1 cut(s)	260
Hin1I	GRCGYC	2 cut(s)	185, 301
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HinfI	GANTC	1 cut(s)	251
HpaII	CCGG	1 cut(s)	346
Hpy166II	GTNNAC	2 cut(s)	241, 343
Hpy188I	TCNGA	4 cut(s)	80, 198, 232, 403
Hpy188III	TCNNGA	2 cut(s)	280, 307
Hpy8I	GTNNAC	2 cut(s)	241, 343
Hpy99I	CGWCG	3 cut(s)	190, 221, 303
HpyAV	CCTTC	1 cut(s)	106
HpyCH4IV	ACGT	1 cut(s)	371
HpyCH4V	TGCA	1 cut(s)	412
HpyF10VI	GCNNNNNNNGC	1 cut(s)	264
HpySE526I	ACGT	1 cut(s)	371
Hsp92I	GRCGYC	2 cut(s)	185, 301
HspAI	GCGC	1 cut(s)	258
Kzo9I	GATC	2 cut(s)	198, 450
LguI	GCTCTTC	1 cut(s)	50
LmnI	GCTCC	1 cut(s)	33
MabI	ACCWGGT	1 cut(s)	234
MaeII	ACGT	1 cut(s)	371
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	2 cut(s)	200, 452
MboI	GATC	2 cut(s)	198, 450
MboII	GAAGA	5 cut(s)	37, 56, 91, 316, 379
MflI	RGATCY	1 cut(s)	450
MhlI	GDGCHC	2 cut(s)	30, 377
MluCI	AATT	1 cut(s)	310
MlyI	GAGTC	1 cut(s)	260
MmeI	TCCRAC	1 cut(s)	154
MnlI	CCTC	5 cut(s)	41, 44, 280, 314, 423
MspA1I	CMGCKG	1 cut(s)	379
MspI	CCGG	1 cut(s)	346
MspR9I	CCNGG	2 cut(s)	145, 236
MvaI	CCWGG	2 cut(s)	145, 236
MvnI	CGCG	1 cut(s)	204
MwoI	GCNNNNNNNGC	1 cut(s)	264
NdeII	GATC	2 cut(s)	198, 450
NlaIV	GGNNCC	1 cut(s)	452
NmeAIII	GCCGAG	1 cut(s)	161
NmuCI	GTSAC	1 cut(s)	317
PciSI	GCTCTTC	1 cut(s)	50
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
Pfl23II	CGTACG	1 cut(s)	386
PflFI	GACNNNGTC	1 cut(s)	236
PinAI	ACCGGT	1 cut(s)	345
PkrI	GCNGC	1 cut(s)	442
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
Psp124BI	GAGCTC	1 cut(s)	30
Psp6I	CCWGG	2 cut(s)	143, 234
PspGI	CCWGG	2 cut(s)	143, 234
PspLI	CGTACG	1 cut(s)	386
PspN4I	GGNNCC	1 cut(s)	452
PspPI	GGNCC	3 cut(s)	147, 232, 343
PsuI	RGATCY	1 cut(s)	450
PsyI	GACNNNGTC	1 cut(s)	236
RsaI	GTAC	3 cut(s)	272, 359, 388
RsaNI	GTAC	3 cut(s)	271, 358, 387
SacI	GAGCTC	1 cut(s)	30
SalI	GTCGAC	1 cut(s)	239
SapI	GCTCTTC	1 cut(s)	50
SatI	GCNGC	1 cut(s)	441
Sau3AI	GATC	2 cut(s)	198, 450
Sau96I	GGNCC	3 cut(s)	147, 232, 343
SchI	GAGTC	1 cut(s)	260
ScrFI	CCNGG	2 cut(s)	145, 236
SduI	GDGCHC	2 cut(s)	30, 377
SetI	ASST	5 cut(s)	30, 45, 98, 237, 374
SexAI	ACCWGGT	1 cut(s)	234
SinI	GGWCC	2 cut(s)	232, 343
Sse9I	AATT	1 cut(s)	310
SsiI	CCGC	7 cut(s)	155, 159, 191, 202, 245, 377, 440
SstI	GAGCTC	1 cut(s)	30
StyD4I	CCNGG	2 cut(s)	143, 234
TaiI	ACGT	1 cut(s)	374
TaqI	TCGA	2 cut(s)	240, 279
TasI	AATT	1 cut(s)	310
TauI	GCSGC	1 cut(s)	443
TseFI	GTSAC	1 cut(s)	317
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	3 cut(s)	37, 115, 385
Tth111I	GACNNNGTC	1 cut(s)	236
VpaK11BI	GGWCC	2 cut(s)	232, 343
XcmI	CCANNNNNNNNNTGG	1 cut(s)	141
XmiI	GTMKAC	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.