Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005870

Physical Location & Seq

Genomic Coordinates Forward (+)

19198229 .. 19198741

Gene Structure 513 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00299260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGGCTTCCCAGTGGGTTACACAGAGGTCTTCTTCCCCAACCTCTTCCTCCACACCCTCTCTCTTTTGGGTTTCATCCGCAACCTCATTTTCTCGCTCTTCCACTTCTTAGGCCTTTCCGATTTCCTCGAGACCGACGCGGGCGTGTGGCCCGAGACCCGGGCTCAGCTGCTGCCGGGATGCCAGACGCCCGCGTCGGTCCTCTTGATCCGGGAATTTCTCCCTGTGATCAGGTTTGAAGACATCGCCGGAGACCCGCCGGAGAGCTGCGCTGTCTGCCTGTACGAGTTCGAGGGCAGTGAGGAGATCAGGTGCTTGACGAATTGCAAGCACATTTTTCACCGGGCGTGTTTGGACCGTTGGATGGACCACGACCAGAAGACGTGTCCGCTTTGCCGGACGGCGTTTGTGCCTGAAGAGGCCAGCGAGGAGTTTAATCGACGGCTCTGGGCCACCGCCGAGTCGGAGCTGGAGCTTCACCGTGATTTTTACAGTGAGTACAGTTCGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0046686 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

170

Amino Acids

19.64

Weight (kDa)

4.75

Isoelectric Point (pI)

57.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	89 - 133	2e-12	Ring finger domain
zf-RING_11	PF17123	90 - 118	6.6e-08	RING-like zinc finger
zf-RING_5	PF14634	90 - 134	1e-07	zinc-RING finger domain
zf-C3HC4_2	PF13923	90 - 132	1e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	90 - 132	1.3e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	97 - 133	1.6e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61460
fragaria_vesca	FvH4_5g02880 FvH4_7g14900
malus_domestica	MD01G1067800.v1.1 MD06G1088300.v1.1 MD07G1133100.v1.1 MD14G1109400.v1.1
prunus_persica	Prupe.2G174100_v2.0.a1 Prupe.5G104300_v2.0.a1
pyrus_communis	pycom14g10350
rosa_chinensis	RchiOBHm_Chr1g0356851 RchiOBHm_Chr7g0197001
rosa_laevigata	RLG00000003966 RLG00000028076
rosa_multiflora	Rmu_sc0003248.1_g000003
rosa_roxburghii	Rroxscaffold_3G00258740 Rroxscaffold_4G00299260
rosa_rugosa	Rorug07G0037000
rosa_samantha	Rh1AG266300 Rh1BG233700 Rh1CG249800 Rh1DG261100 Rh7AG162000 Rh7BG163900 Rh7CG170100 Rh7DG163200
rosa_wichuraiana	Rw1G023530 Rw7G014140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	193
AccII	CGCG	2 cut(s)	140, 194
AciI	CCGC	6 cut(s)	79, 140, 192, 257, 389, 456
AclWI	GGATC	1 cut(s)	202
AcsI	RAATTY	1 cut(s)	215
AcuI	CTGAAG	1 cut(s)	435
AcyI	GRCGYC	1 cut(s)	188
AfaI	GTAC	2 cut(s)	284, 500
AfiI	CCNNNNNNNGG	2 cut(s)	159, 364
AflIII	ACRYGT	1 cut(s)	383
AgsI	TTSAA	1 cut(s)	239
AjiI	CACGTC	1 cut(s)	384
AluBI	AGCT	4 cut(s)	169, 267, 469, 475
AluI	AGCT	4 cut(s)	169, 267, 469, 475
Alw26I	GTCTC	3 cut(s)	125, 149, 246
AlwI	GGATC	1 cut(s)	202
AlwNI	CAGNNNCTG	1 cut(s)	172
Ama87I	CYCGRG	3 cut(s)	128, 152, 159
AoxI	GGCC	4 cut(s)	112, 149, 420, 450
ApeKI	GCWGC	3 cut(s)	169, 172, 267
ApoI	RAATTY	1 cut(s)	215
AspLEI	GCGC	1 cut(s)	272
AspS9I	GGNCC	5 cut(s)	150, 199, 355, 367, 450
AsuC2I	CCSGG	5 cut(s)	160, 161, 177, 212, 344
AsuHPI	GGTGA	2 cut(s)	332, 470
AvaI	CYCGRG	3 cut(s)	128, 152, 159
AvaII	GGWCC	3 cut(s)	199, 355, 367
BanII	GRGCYC	1 cut(s)	166
BbsI	GAAGAC	3 cut(s)	22, 246, 386
BbvI	GCAGC	3 cut(s)	156, 159, 254
BccI	CCATC	1 cut(s)	358
BceAI	ACGGC	2 cut(s)	417, 458
BclI	TGATCA	1 cut(s)	228
BcnI	CCSGG	5 cut(s)	160, 161, 177, 212, 344
BcoDI	GTCTC	3 cut(s)	125, 149, 246
BisI	GCNGC	3 cut(s)	170, 173, 268
BlpI	GCTNAGC	1 cut(s)	165
BlsI	GCNGC	3 cut(s)	171, 174, 269
Bme1390I	CCNGG	5 cut(s)	160, 161, 177, 212, 344
Bme18I	GGWCC	3 cut(s)	199, 355, 367
BmeT110I	CYCGRG	3 cut(s)	128, 152, 159
BmgBI	CACGTC	1 cut(s)	384
BmgT120I	GGNCC	5 cut(s)	150, 199, 355, 367, 450
BmrFI	CCNGG	5 cut(s)	160, 161, 177, 212, 344
BmrI	ACTGGG	1 cut(s)	5
BmsI	GCATC	1 cut(s)	170
BmuI	ACTGGG	1 cut(s)	5
BpiI	GAAGAC	3 cut(s)	22, 246, 386
BpmI	CTGGAG	1 cut(s)	491
Bpu1102I	GCTNAGC	1 cut(s)	165
BpuMI	CCSGG	5 cut(s)	160, 161, 177, 212, 344
BsaHI	GRCGYC	1 cut(s)	188
BsaI	GGTCTC	3 cut(s)	125, 149, 246
BsaJI	CCNNGG	1 cut(s)	159
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bsc4I	CCNNNNNNNGG	2 cut(s)	159, 364
Bse1I	ACTGG	1 cut(s)	11
BseDI	CCNNGG	1 cut(s)	159
BseGI	GGATG	3 cut(s)	75, 185, 369
BseLI	CCNNNNNNNGG	2 cut(s)	159, 364
BseMII	CTCAG	1 cut(s)	179
BseNI	ACTGG	1 cut(s)	11
BseRI	GAGGAG	2 cut(s)	317, 443
BseXI	GCAGC	3 cut(s)	156, 159, 254
Bsh1236I	CGCG	2 cut(s)	140, 194
BshFI	GGCC	4 cut(s)	114, 151, 422, 452
BsiHKCI	CYCGRG	3 cut(s)	128, 152, 159
BsiSI	CCGG	7 cut(s)	160, 176, 211, 249, 260, 343, 397
BslI	CCNNNNNNNGG	2 cut(s)	159, 364
BsmAI	GTCTC	3 cut(s)	125, 149, 246
BsnI	GGCC	4 cut(s)	114, 151, 422, 452
Bso31I	GGTCTC	3 cut(s)	125, 149, 246
BsoBI	CYCGRG	3 cut(s)	128, 152, 159
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp143I	GATC	3 cut(s)	207, 228, 306
Bsp1720I	GCTNAGC	1 cut(s)	165
BspACI	CCGC	6 cut(s)	79, 140, 192, 257, 389, 456
BspANI	GGCC	4 cut(s)	114, 151, 422, 452
BspCNI	CTCAG	1 cut(s)	178
BspFNI	CGCG	2 cut(s)	140, 194
BspPI	GGATC	1 cut(s)	202
BspQI	GCTCTTC	1 cut(s)	104
BspTNI	GGTCTC	3 cut(s)	125, 149, 246
BsrI	ACTGG	1 cut(s)	11
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	3 cut(s)	207, 228, 306
BssNI	GRCGYC	1 cut(s)	188
Bst4CI	ACNGT	4 cut(s)	359, 482, 494, 503
Bst6I	CTCTTC	3 cut(s)	50, 104, 411
BstACI	GRCGYC	1 cut(s)	188
BstC8I	GCNNGC	4 cut(s)	142, 192, 329, 424
BstDEI	CTNAG	2 cut(s)	109, 165
BstF5I	GGATG	3 cut(s)	75, 185, 369
BstFNI	CGCG	2 cut(s)	140, 194
BstHHI	GCGC	1 cut(s)	272
BstKTI	GATC	3 cut(s)	210, 231, 309
BstMAI	GTCTC	3 cut(s)	125, 149, 246
BstMBI	GATC	3 cut(s)	207, 228, 306
BstMWI	GCNNNNNNNGC	1 cut(s)	276
BstSCI	CCNGG	5 cut(s)	158, 159, 175, 210, 342
BstUI	CGCG	2 cut(s)	140, 194
BstV1I	GCAGC	3 cut(s)	156, 159, 254
BstV2I	GAAGAC	3 cut(s)	22, 246, 386
BsuRI	GGCC	4 cut(s)	114, 151, 422, 452
BtgZI	GCGATG	1 cut(s)	229
BtrI	CACGTC	1 cut(s)	384
BtsCI	GGATG	3 cut(s)	75, 185, 369
BtsI	GCAGTG	1 cut(s)	304
BtsIMutI	CAGTG	3 cut(s)	18, 304, 499
Cac8I	GCNNGC	4 cut(s)	142, 192, 329, 424
CaiI	CAGNNNCTG	1 cut(s)	172
CfoI	GCGC	1 cut(s)	272
Cfr13I	GGNCC	5 cut(s)	150, 199, 355, 367, 450
Cfr9I	CCCGGG	1 cut(s)	159
CseI	GACGC	3 cut(s)	146, 183, 196
Csp6I	GTAC	2 cut(s)	283, 499
CviQI	GTAC	2 cut(s)	283, 499
DdeI	CTNAG	2 cut(s)	109, 165
DpnI	GATC	3 cut(s)	209, 230, 308
DpnII	GATC	3 cut(s)	207, 228, 306
DrdI	GACNNNNNNGTC	1 cut(s)	193
DseDI	GACNNNNNNGTC	1 cut(s)	193
Eam1104I	CTCTTC	3 cut(s)	50, 104, 411
EarI	CTCTTC	3 cut(s)	50, 104, 411
Eco147I	AGGCCT	1 cut(s)	114
Eco24I	GRGCYC	1 cut(s)	166
Eco31I	GGTCTC	3 cut(s)	125, 149, 246
Eco47I	GGWCC	3 cut(s)	199, 355, 367
Eco57I	CTGAAG	1 cut(s)	435
Eco88I	CYCGRG	3 cut(s)	128, 152, 159
EcoT38I	GRGCYC	1 cut(s)	166
FauI	CCCGC	3 cut(s)	133, 199, 264
FbaI	TGATCA	1 cut(s)	228
Fnu4HI	GCNGC	3 cut(s)	170, 173, 268
FokI	GGATG	3 cut(s)	62, 192, 376
FriOI	GRGCYC	1 cut(s)	166
Fsp4HI	GCNGC	3 cut(s)	170, 173, 268
GlaI	GCGC	1 cut(s)	271
GluI	GCNGC	3 cut(s)	170, 173, 268
GsuI	CTGGAG	1 cut(s)	491
HaeIII	GGCC	4 cut(s)	114, 151, 422, 452
HapII	CCGG	7 cut(s)	160, 176, 211, 249, 260, 343, 397
HgaI	GACGC	3 cut(s)	146, 183, 196
HhaI	GCGC	1 cut(s)	272
Hin1I	GRCGYC	1 cut(s)	188
Hin6I	GCGC	1 cut(s)	270
HinP1I	GCGC	1 cut(s)	270
HinfI	GANTC	1 cut(s)	461
HpaII	CCGG	7 cut(s)	160, 176, 211, 249, 260, 343, 397
HphI	GGTGA	2 cut(s)	332, 470
Hpy188I	TCNGA	3 cut(s)	121, 466, 512
Hpy188III	TCNNGA	2 cut(s)	130, 205
Hpy99I	CGWCG	3 cut(s)	140, 199, 444
HpyCH4III	ACNGT	4 cut(s)	359, 482, 494, 503
HpyCH4IV	ACGT	1 cut(s)	383
HpyCH4V	TGCA	1 cut(s)	327
HpyF10VI	GCNNNNNNNGC	1 cut(s)	276
HpyF3I	CTNAG	2 cut(s)	109, 165
HpySE526I	ACGT	1 cut(s)	383
Hsp92I	GRCGYC	1 cut(s)	188
HspAI	GCGC	1 cut(s)	270
Ksp22I	TGATCA	1 cut(s)	228
Kzo9I	GATC	3 cut(s)	207, 228, 306
LguI	GCTCTTC	1 cut(s)	104
LmnI	GCTCC	2 cut(s)	466, 472
Lsp1109I	GCAGC	3 cut(s)	156, 159, 254
LweI	GCATC	1 cut(s)	170
MaeII	ACGT	1 cut(s)	383
MaeIII	GTNAC	1 cut(s)	17
MalI	GATC	3 cut(s)	209, 230, 308
MboI	GATC	3 cut(s)	207, 228, 306
MboII	GAAGA	7 cut(s)	22, 25, 37, 91, 251, 391, 428
MhlI	GDGCHC	1 cut(s)	166
MluCI	AATT	2 cut(s)	215, 322
MlyI	GAGTC	1 cut(s)	470
MmeI	TCCRAC	2 cut(s)	341, 444
MseI	TTAA	1 cut(s)	435
MspA1I	CMGCKG	1 cut(s)	169
MspI	CCGG	7 cut(s)	160, 176, 211, 249, 260, 343, 397
MspR9I	CCNGG	5 cut(s)	160, 161, 177, 212, 344
MvnI	CGCG	2 cut(s)	140, 194
MwoI	GCNNNNNNNGC	1 cut(s)	276
NciI	CCSGG	5 cut(s)	160, 161, 177, 212, 344
NdeII	GATC	3 cut(s)	207, 228, 306
NmeAIII	GCCGAG	1 cut(s)	484
PaeR7I	CTCGAG	1 cut(s)	128
PceI	AGGCCT	1 cut(s)	114
PciSI	GCTCTTC	1 cut(s)	104
PfoI	TCCNGGA	1 cut(s)	210
PkrI	GCNGC	3 cut(s)	171, 174, 269
PleI	GAGTC	1 cut(s)	469
PpsI	GAGTC	1 cut(s)	469
PspPI	GGNCC	5 cut(s)	150, 199, 355, 367, 450
PstNI	CAGNNNCTG	1 cut(s)	172
PvuII	CAGCTG	1 cut(s)	169
RsaI	GTAC	2 cut(s)	284, 500
RsaNI	GTAC	2 cut(s)	283, 499
SapI	GCTCTTC	1 cut(s)	104
SaqAI	TTAA	1 cut(s)	435
SatI	GCNGC	3 cut(s)	170, 173, 268
Sau3AI	GATC	3 cut(s)	207, 228, 306
Sau96I	GGNCC	5 cut(s)	150, 199, 355, 367, 450
SchI	GAGTC	1 cut(s)	470
ScrFI	CCNGG	5 cut(s)	160, 161, 177, 212, 344
SduI	GDGCHC	1 cut(s)	166
SfaNI	GCATC	1 cut(s)	170
Sfr274I	CTCGAG	1 cut(s)	128
SinI	GGWCC	3 cut(s)	199, 355, 367
SlaI	CTCGAG	1 cut(s)	128
SmaI	CCCGGG	1 cut(s)	161
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	2 cut(s)	215, 322
SseBI	AGGCCT	1 cut(s)	114
SsiI	CCGC	6 cut(s)	79, 140, 192, 257, 389, 456
StuI	AGGCCT	1 cut(s)	114
StyD4I	CCNGG	5 cut(s)	158, 159, 175, 210, 342
TaaI	ACNGT	4 cut(s)	359, 482, 494, 503
TaiI	ACGT	1 cut(s)	386
TaqI	TCGA	3 cut(s)	129, 291, 439
TaqII	GACCGA	3 cut(s)	149, 187, 496
TasI	AATT	2 cut(s)	215, 322
TatI	WGTACW	1 cut(s)	498
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TscAI	CASTG	3 cut(s)	18, 304, 499
TseI	GCWGC	3 cut(s)	169, 172, 267
TspDTI	ATGAA	1 cut(s)	64
TspMI	CCCGGG	1 cut(s)	159
TspRI	CASTG	3 cut(s)	18, 304, 499
VpaK11BI	GGWCC	3 cut(s)	199, 355, 367
XapI	RAATTY	1 cut(s)	215
XhoI	CTCGAG	1 cut(s)	128
XmaI	CCCGGG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.