Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005870

Physical Location & Seq

Genomic Coordinates Reverse (-)

22021910 .. 22022464

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G174100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGGCTTCCCAGTGGGATACACAGAGGTCTTCTTTCCCAACATCTTTCTCCACACACTCTCTCTTCTGGGTTTCATCCGAAACCTCATTTTCTCGCTCTTCTACTTTCTGGGTCTCTCCGAATTTCTCGAAACCGACGTCGTTTGGCCAGAGACCAGGACCCGTATGCCCGAAAACCCGCCCGTATCGGCCCTCCTGATCCGGGAATTCCTGCCCGTGATTAAGTTTCGGGACCTAGCCGGAGACCGGCCTGAAAACTGTGCCGTTTGTCTGTACGAGTTTGAGGTCGAGGAGGAGATCAGGTGTTTAACGAATTGCAAGCACATTTTTCACAGGGCGTGTTTGGACCGTTGGATGGACCATGATCAGAAGACGTGCCCTCTTTGTAGGACGCCCTTCGTGCCTGATGAGATGAGCGATGAGTTTAATCAACGGCTCTGGGCTGCCTCTGAGATTCACCATGAATTTTACAGCGAGTACAGTTCGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0046686 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

164

Amino Acids

19.28

Weight (kDa)

4.9

Isoelectric Point (pI)

60.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61460
fragaria_vesca	FvH4_5g02880 FvH4_7g14900
malus_domestica	MD01G1067800.v1.1 MD06G1088300.v1.1 MD07G1133100.v1.1 MD14G1109400.v1.1
prunus_persica	Prupe.2G174100_v2.0.a1 Prupe.5G104300_v2.0.a1
pyrus_communis	pycom14g10350
rosa_chinensis	RchiOBHm_Chr1g0356851 RchiOBHm_Chr7g0197001
rosa_laevigata	RLG00000003966 RLG00000028076
rosa_multiflora	Rmu_sc0003248.1_g000003
rosa_roxburghii	Rroxscaffold_3G00258740 Rroxscaffold_4G00299260
rosa_rugosa	Rorug07G0037000
rosa_samantha	Rh1AG266300 Rh1BG233700 Rh1CG249800 Rh1DG261100 Rh7AG162000 Rh7BG163900 Rh7CG170100 Rh7DG163200
rosa_wichuraiana	Rw1G023530 Rw7G014140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	141
AciI	CCGC	1 cut(s)	179
AclWI	GGATC	1 cut(s)	193
AcoI	YGGCCR	1 cut(s)	146
AcsI	RAATTY	3 cut(s)	122, 206, 464
AcyI	GRCGYC	2 cut(s)	138, 392
AfaI	GTAC	2 cut(s)	275, 479
AfiI	CCNNNNNNNGG	3 cut(s)	202, 246, 355
AjiI	CACGTC	1 cut(s)	375
AjnI	CCWGG	1 cut(s)	155
Alw26I	GTCTC	3 cut(s)	119, 146, 237
AlwI	GGATC	1 cut(s)	193
AoxI	GGCC	3 cut(s)	146, 189, 248
ApeKI	GCWGC	1 cut(s)	443
ApoI	RAATTY	3 cut(s)	122, 206, 464
ArsI	GACNNNNNNTTYG	2 cut(s)	123, 155
AspS9I	GGNCC	5 cut(s)	159, 190, 232, 346, 358
AsuC2I	CCSGG	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	449
AvaII	GGWCC	4 cut(s)	159, 232, 346, 358
BaeGI	GKGCMC	1 cut(s)	380
BalI	TGGCCA	1 cut(s)	148
BbsI	GAAGAC	2 cut(s)	22, 377
BbvI	GCAGC	1 cut(s)	430
BccI	CCATC	1 cut(s)	349
BceAI	ACGGC	2 cut(s)	248, 449
BciT130I	CCWGG	1 cut(s)	157
BciVI	GTATCC	1 cut(s)	11
BclI	TGATCA	1 cut(s)	364
BcnI	CCSGG	1 cut(s)	203
BcoDI	GTCTC	3 cut(s)	119, 146, 237
BfaI	CTAG	1 cut(s)	236
BfuI	GTATCC	1 cut(s)	11
BisI	GCNGC	1 cut(s)	444
BlsI	GCNGC	1 cut(s)	445
Bme1390I	CCNGG	2 cut(s)	157, 203
Bme18I	GGWCC	4 cut(s)	159, 232, 346, 358
BmgBI	CACGTC	1 cut(s)	375
BmgT120I	GGNCC	5 cut(s)	159, 190, 232, 346, 358
BmiI	GGNNCC	2 cut(s)	161, 233
BmrFI	CCNGG	2 cut(s)	157, 203
BmrI	ACTGGG	1 cut(s)	5
BmuI	ACTGGG	1 cut(s)	5
BpiI	GAAGAC	2 cut(s)	22, 377
BpuMI	CCSGG	1 cut(s)	203
BsaHI	GRCGYC	2 cut(s)	138, 392
BsaI	GGTCTC	3 cut(s)	119, 146, 237
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bsc4I	CCNNNNNNNGG	3 cut(s)	202, 246, 355
Bse118I	RCCGGY	1 cut(s)	246
Bse1I	ACTGG	1 cut(s)	11
BseBI	CCWGG	1 cut(s)	157
BseGI	GGATG	2 cut(s)	75, 360
BseLI	CCNNNNNNNGG	3 cut(s)	202, 246, 355
BseMII	CTCAG	1 cut(s)	441
BseNI	ACTGG	1 cut(s)	11
BseRI	GAGGAG	2 cut(s)	305, 308
BseSI	GKGCMC	1 cut(s)	380
BseXI	GCAGC	1 cut(s)	430
BshFI	GGCC	3 cut(s)	148, 191, 250
BsiSI	CCGG	3 cut(s)	202, 240, 247
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	3 cut(s)	202, 246, 355
BsmAI	GTCTC	3 cut(s)	119, 146, 237
BsmFI	GGGAC	1 cut(s)	245
BsnI	GGCC	3 cut(s)	148, 191, 250
Bso31I	GGTCTC	3 cut(s)	119, 146, 237
Bsp1286I	GDGCHC	1 cut(s)	380
Bsp143I	GATC	3 cut(s)	198, 297, 364
BspACI	CCGC	1 cut(s)	179
BspANI	GGCC	3 cut(s)	148, 191, 250
BspCNI	CTCAG	1 cut(s)	442
BspLI	GGNNCC	2 cut(s)	161, 233
BspPI	GGATC	1 cut(s)	193
BspQI	GCTCTTC	1 cut(s)	104
BspTNI	GGTCTC	3 cut(s)	119, 146, 237
BsrFI	RCCGGY	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	11
BssAI	RCCGGY	1 cut(s)	246
BssMI	GATC	3 cut(s)	198, 297, 364
BssNI	GRCGYC	2 cut(s)	138, 392
Bst2UI	CCWGG	1 cut(s)	157
Bst4CI	ACNGT	3 cut(s)	260, 350, 482
Bst6I	CTCTTC	2 cut(s)	69, 104
BstACI	GRCGYC	2 cut(s)	138, 392
BstC8I	GCNNGC	1 cut(s)	320
BstDEI	CTNAG	1 cut(s)	450
BstF5I	GGATG	2 cut(s)	75, 360
BstKTI	GATC	3 cut(s)	201, 300, 367
BstMAI	GTCTC	3 cut(s)	119, 146, 237
BstMBI	GATC	3 cut(s)	198, 297, 364
BstMWI	GCNNNNNNNGC	1 cut(s)	400
BstNI	CCWGG	1 cut(s)	157
BstSCI	CCNGG	2 cut(s)	155, 201
BstSLI	GKGCMC	1 cut(s)	380
BstV1I	GCAGC	1 cut(s)	430
BstV2I	GAAGAC	2 cut(s)	22, 377
BsuI	GTATCC	1 cut(s)	11
BsuRI	GGCC	3 cut(s)	148, 191, 250
BtgZI	GCGATG	1 cut(s)	432
BtrI	CACGTC	1 cut(s)	375
BtsCI	GGATG	2 cut(s)	75, 360
BtsIMutI	CAGTG	1 cut(s)	18
Cac8I	GCNNGC	1 cut(s)	320
Cfr10I	RCCGGY	1 cut(s)	246
Cfr13I	GGNCC	5 cut(s)	159, 190, 232, 346, 358
CseI	GACGC	1 cut(s)	400
Csp6I	GTAC	2 cut(s)	274, 478
CviAII	CATG	2 cut(s)	362, 461
CviJI	RGCY	7 cut(s)	6, 148, 191, 239, 250, 436, 443
CviKI_1	RGCY	7 cut(s)	6, 148, 191, 239, 250, 436, 443
CviQI	GTAC	2 cut(s)	274, 478
DdeI	CTNAG	1 cut(s)	450
DpnI	GATC	3 cut(s)	200, 299, 366
DpnII	GATC	3 cut(s)	198, 297, 364
EaeI	YGGCCR	1 cut(s)	146
Eam1104I	CTCTTC	2 cut(s)	69, 104
EarI	CTCTTC	2 cut(s)	69, 104
Eco31I	GGTCTC	3 cut(s)	119, 146, 237
Eco47I	GGWCC	4 cut(s)	159, 232, 346, 358
EcoO109I	RGGNCCY	2 cut(s)	159, 232
EcoRI	GAATTC	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	155
FaeI	CATG	2 cut(s)	365, 464
FaiI	YATR	3 cut(s)	167, 363, 462
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	2 cut(s)	361, 460
FauI	CCCGC	1 cut(s)	186
FbaI	TGATCA	1 cut(s)	364
Fnu4HI	GCNGC	1 cut(s)	444
FokI	GGATG	2 cut(s)	62, 367
Fsp4HI	GCNGC	1 cut(s)	444
FspBI	CTAG	1 cut(s)	236
GluI	GCNGC	1 cut(s)	444
HaeIII	GGCC	3 cut(s)	148, 191, 250
HapII	CCGG	3 cut(s)	202, 240, 247
HgaI	GACGC	1 cut(s)	400
Hin1I	GRCGYC	2 cut(s)	138, 392
Hin1II	CATG	2 cut(s)	365, 464
HinfI	GANTC	1 cut(s)	454
HpaII	CCGG	3 cut(s)	202, 240, 247
HphI	GGTGA	1 cut(s)	449
Hpy188I	TCNGA	4 cut(s)	80, 121, 369, 451
Hpy188III	TCNNGA	3 cut(s)	128, 196, 230
Hpy99I	CGWCG	2 cut(s)	140, 143
HpyAV	CCTTC	1 cut(s)	406
HpyCH4III	ACNGT	3 cut(s)	260, 350, 482
HpyCH4IV	ACGT	2 cut(s)	138, 374
HpyCH4V	TGCA	1 cut(s)	318
HpyF10VI	GCNNNNNNNGC	1 cut(s)	400
HpyF3I	CTNAG	1 cut(s)	450
HpySE526I	ACGT	2 cut(s)	138, 374
Hsp92I	GRCGYC	2 cut(s)	138, 392
Hsp92II	CATG	2 cut(s)	365, 464
Ksp22I	TGATCA	1 cut(s)	364
Kzo9I	GATC	3 cut(s)	198, 297, 364
LguI	GCTCTTC	1 cut(s)	104
Lsp1109I	GCAGC	1 cut(s)	430
MaeI	CTAG	1 cut(s)	236
MaeII	ACGT	2 cut(s)	138, 374
MalI	GATC	3 cut(s)	200, 299, 366
MboI	GATC	3 cut(s)	198, 297, 364
MboII	GAAGA	4 cut(s)	22, 56, 91, 382
MhlI	GDGCHC	1 cut(s)	380
MlsI	TGGCCA	1 cut(s)	148
MluCI	AATT	4 cut(s)	122, 206, 313, 464
MluNI	TGGCCA	1 cut(s)	148
MmeI	TCCRAC	1 cut(s)	332
MnlI	CCTC	8 cut(s)	19, 95, 203, 277, 283, 286, 390, 457
Mox20I	TGGCCA	1 cut(s)	148
MscI	TGGCCA	1 cut(s)	148
MseI	TTAA	3 cut(s)	222, 308, 426
Msp20I	TGGCCA	1 cut(s)	148
MspI	CCGG	3 cut(s)	202, 240, 247
MspR9I	CCNGG	2 cut(s)	157, 203
MvaI	CCWGG	1 cut(s)	157
MwoI	GCNNNNNNNGC	1 cut(s)	400
NciI	CCSGG	1 cut(s)	203
NdeII	GATC	3 cut(s)	198, 297, 364
NlaIII	CATG	2 cut(s)	365, 464
NlaIV	GGNNCC	2 cut(s)	161, 233
PciSI	GCTCTTC	1 cut(s)	104
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	454
PfoI	TCCNGGA	1 cut(s)	201
PkrI	GCNGC	1 cut(s)	445
PpuMI	RGGWCCY	2 cut(s)	159, 232
Psp5II	RGGWCCY	2 cut(s)	159, 232
Psp6I	CCWGG	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	155
PspN4I	GGNNCC	2 cut(s)	161, 233
PspPI	GGNCC	5 cut(s)	159, 190, 232, 346, 358
PspPPI	RGGWCCY	2 cut(s)	159, 232
RsaI	GTAC	2 cut(s)	275, 479
RsaNI	GTAC	2 cut(s)	274, 478
SapI	GCTCTTC	1 cut(s)	104
SaqAI	TTAA	3 cut(s)	222, 308, 426
SatI	GCNGC	1 cut(s)	444
Sau3AI	GATC	3 cut(s)	198, 297, 364
Sau96I	GGNCC	5 cut(s)	159, 190, 232, 346, 358
ScrFI	CCNGG	2 cut(s)	157, 203
SduI	GDGCHC	1 cut(s)	380
SetI	ASST	7 cut(s)	30, 87, 141, 237, 288, 305, 377
SinI	GGWCC	4 cut(s)	159, 232, 346, 358
Sse9I	AATT	4 cut(s)	122, 206, 313, 464
SsiI	CCGC	1 cut(s)	179
SspMI	CTAG	1 cut(s)	236
StyD4I	CCNGG	2 cut(s)	155, 201
TaaI	ACNGT	3 cut(s)	260, 350, 482
TaiI	ACGT	2 cut(s)	141, 377
TaqI	TCGA	2 cut(s)	129, 288
TasI	AATT	4 cut(s)	122, 206, 313, 464
TatI	WGTACW	1 cut(s)	477
TfiI	GAWTC	1 cut(s)	454
Tru1I	TTAA	3 cut(s)	222, 308, 426
Tru9I	TTAA	3 cut(s)	222, 308, 426
TscAI	CASTG	1 cut(s)	18
TseI	GCWGC	1 cut(s)	443
TspDTI	ATGAA	2 cut(s)	64, 477
TspRI	CASTG	1 cut(s)	18
VpaK11BI	GGWCC	4 cut(s)	159, 232, 346, 358
XapI	RAATTY	3 cut(s)	122, 206, 464
XspI	CTAG	1 cut(s)	236
ZraI	GACGTC	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.