FvH4_7g18860

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0011310
Physical Location & Seq
Forward (+)
15684357 .. 15690714
6358 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g18860.t1

Sequence Viewer

Length: 831 bp
ATGAAGTGGCAAAGATTCTTATCGATCCCTATCTTTGCTGTTCTTCTGTTGACGGGTTTTGTCTGTTACATCACGGTCTTCATTTTCATCGAAGATTGGGTTGGGTTGCAGAGCTCTGCTGGTTCTTTGAACGCTCTGATCTTCACTGTCCTGGCTTCTCTGTGTCTCTTCTCTTTCTCTTCGTGTGTTCTGATCGACCCAGGTTACGCCACAGCTTCATATGTCCCTGATGTTGAAGACAGTGGAGTGTCTGATCAGGAGGCCAAGACAAATGTTATACAATCAAGGCGTTGTGACAAGTGTTCAACATACAAGCCTCCTAGGGCTCATCATTGCCGGGTCTGCAGAAGGTGTGTTTTAAGAATGGATCATCACTGTCTGTGGGTCAATAACTGTGTTGGTTATTGGAACTACAAGGCCTTCTTTACACTAGTCTTCTATACAACAATGGGAAGCTTGTATTCTACAACCATCGTTATAACTTGTGCTTTCCAAAAGGACTGGGATTTCGGTGGAAGTGGGAGCCTCAAAGTCTTTTATGTTACGTGTGCAGTAACGATGGCTGCCTTGACCTTAACGCTTGGAACTCTTCTAGGATGGCATGTGTACCTCATCATCCGTAATATGACAACTATAGAGTATTACGAAGCAATTCGAACTGAATGGCTGGCTAGGAAATCTGGGCAGAGCTACAAACATCCATACAACCTAAGTGTCTACAAAAACATTACTTCGGTCTTGGGTCCGAATATGATGAAATGGTTATGGCCTGTAGCAGTAAGCCATCTAAAAGATGGACTTGTGTTCCCTACTCCGCGTGATAATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

277

Amino Acids

31.36

Weight (kDa)

8.78

Isoelectric Point (pI)

36.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 94 - 216 1.3e-35 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 479
AccI GTMKAC 1 cut(s) 717
AccII CGCG 1 cut(s) 817
AciI CCGC 1 cut(s) 815
AclWI GGATC 2 cut(s) 19, 375
AfaI GTAC 1 cut(s) 608
AflIII ACRYGT 1 cut(s) 545
AgsI TTSAA 3 cut(s) 130, 236, 306
AhlI ACTAGT 1 cut(s) 430
AjnI CCWGG 2 cut(s) 150, 199
AjuI GAANNNNNNNTTGG 2 cut(s) 84, 116
AluBI AGCT 4 cut(s) 114, 215, 456, 690
AluI AGCT 4 cut(s) 114, 215, 456, 690
Alw21I GWGCWC 1 cut(s) 116
Alw26I GTCTC 1 cut(s) 170
AlwI GGATC 2 cut(s) 19, 375
AoxI GGCC 3 cut(s) 261, 417, 767
ApeKI GCWGC 1 cut(s) 563
ArsI GACNNNNNNTTYG 2 cut(s) 491, 523
Asp700I GAANNNNTTC 1 cut(s) 651
AspA2I CCTAGG 1 cut(s) 320
AspS9I GGNCC 1 cut(s) 743
AsuC2I CCSGG 1 cut(s) 338
AsuII TTCGAA 1 cut(s) 655
AvaII GGWCC 1 cut(s) 743
AvrII CCTAGG 1 cut(s) 320
BanII GRGCYC 2 cut(s) 116, 328
BbsI GAAGAC 3 cut(s) 70, 243, 427
Bbv12I GWGCWC 1 cut(s) 116
BbvI GCAGC 1 cut(s) 550
BccI CCATC 5 cut(s) 479, 553, 591, 788, 792
BciT130I CCWGG 2 cut(s) 152, 201
BclI TGATCA 1 cut(s) 253
BcnI CCSGG 1 cut(s) 338
BcoDI GTCTC 1 cut(s) 170
BcuI ACTAGT 1 cut(s) 430
BfaI CTAG 4 cut(s) 321, 431, 593, 672
BfmI CTRYAG 3 cut(s) 343, 633, 771
BisI GCNGC 1 cut(s) 564
BlnI CCTAGG 1 cut(s) 320
BlsI GCNGC 1 cut(s) 565
Bme1390I CCNGG 3 cut(s) 152, 201, 338
Bme18I GGWCC 1 cut(s) 743
BmgT120I GGNCC 1 cut(s) 743
BmiI GGNNCC 2 cut(s) 524, 744
BmrFI CCNGG 3 cut(s) 152, 201, 338
BmrI ACTGGG 1 cut(s) 511
BmuI ACTGGG 1 cut(s) 511
BpiI GAAGAC 3 cut(s) 70, 243, 427
Bpu14I TTCGAA 1 cut(s) 655
BpuMI CCSGG 1 cut(s) 338
Bsa29I ATCGAT 1 cut(s) 23
BsaAI YACGTR 1 cut(s) 546
BsaBI GATNNNNATC 2 cut(s) 19, 29
BsaJI CCNNGG 2 cut(s) 199, 320
Bse1I ACTGG 1 cut(s) 506
Bse3DI GCAATG 1 cut(s) 331
Bse8I GATNNNNATC 2 cut(s) 19, 29
BseBI CCWGG 2 cut(s) 152, 201
BseCI ATCGAT 1 cut(s) 23
BseDI CCNNGG 2 cut(s) 199, 320
BseGI GGATG 3 cut(s) 602, 615, 697
BseJI GATNNNNATC 2 cut(s) 19, 29
BseMI GCAATG 1 cut(s) 331
BseNI ACTGG 1 cut(s) 506
BseXI GCAGC 1 cut(s) 550
BsgI GTGCAG 1 cut(s) 570
Bsh1236I CGCG 1 cut(s) 817
BshFI GGCC 3 cut(s) 263, 419, 769
BshVI ATCGAT 1 cut(s) 23
BsiHKAI GWGCWC 1 cut(s) 116
BsiSI CCGG 1 cut(s) 337
BslFI GGGAC 1 cut(s) 209
BsmAI GTCTC 1 cut(s) 170
BsmFI GGGAC 1 cut(s) 209
BsnI GGCC 3 cut(s) 263, 419, 769
Bsp119I TTCGAA 1 cut(s) 655
Bsp1286I GDGCHC 2 cut(s) 116, 328
Bsp143I GATC 5 cut(s) 24, 138, 192, 253, 367
BspACI CCGC 1 cut(s) 815
BspANI GGCC 3 cut(s) 263, 419, 769
BspDI ATCGAT 1 cut(s) 23
BspFNI CGCG 1 cut(s) 817
BspLI GGNNCC 2 cut(s) 524, 744
BspMAI CTGCAG 1 cut(s) 347
BspPI GGATC 2 cut(s) 19, 375
BspT104I TTCGAA 1 cut(s) 655
BsrDI GCAATG 1 cut(s) 331
BsrI ACTGG 1 cut(s) 506
BssECI CCNNGG 2 cut(s) 199, 320
BssMI GATC 5 cut(s) 24, 138, 192, 253, 367
BssT1I CCWWGG 1 cut(s) 320
Bst2UI CCWGG 2 cut(s) 152, 201
Bst4CI ACNGT 5 cut(s) 76, 148, 242, 377, 395
Bst6I CTCTTC 3 cut(s) 173, 184, 594
BstBAI YACGTR 1 cut(s) 546
BstBI TTCGAA 1 cut(s) 655
BstC8I GCNNGC 1 cut(s) 669
BstDEI CTNAG 1 cut(s) 710
BstF5I GGATG 3 cut(s) 602, 615, 697
BstFNI CGCG 1 cut(s) 817
BstKTI GATC 5 cut(s) 27, 141, 195, 256, 370
BstMAI GTCTC 1 cut(s) 170
BstMBI GATC 5 cut(s) 24, 138, 192, 253, 367
BstMWI GCNNNNNNNGC 1 cut(s) 342
BstNI CCWGG 2 cut(s) 152, 201
BstNSI RCATGY 1 cut(s) 605
BstSCI CCNGG 3 cut(s) 150, 199, 336
BstSFI CTRYAG 3 cut(s) 343, 633, 771
BstUI CGCG 1 cut(s) 817
BstV1I GCAGC 1 cut(s) 550
BstV2I GAAGAC 3 cut(s) 70, 243, 427
Bsu15I ATCGAT 1 cut(s) 23
BsuRI GGCC 3 cut(s) 263, 419, 769
BsuTUI ATCGAT 1 cut(s) 23
BtsCI GGATG 3 cut(s) 602, 615, 697
BtsIMutI CAGTG 3 cut(s) 144, 247, 373
Cac8I GCNNGC 1 cut(s) 669
Cfr13I GGNCC 1 cut(s) 743
ClaI ATCGAT 1 cut(s) 23
Csp6I GTAC 1 cut(s) 607
CviAII CATG 1 cut(s) 602
CviQI GTAC 1 cut(s) 607
DdeI CTNAG 1 cut(s) 710
DpnI GATC 5 cut(s) 26, 140, 194, 255, 369
DpnII GATC 5 cut(s) 24, 138, 192, 253, 367
Eam1104I CTCTTC 3 cut(s) 173, 184, 594
EarI CTCTTC 3 cut(s) 173, 184, 594
Ecl136II GAGCTC 1 cut(s) 114
Eco130I CCWWGG 1 cut(s) 320
Eco147I AGGCCT 1 cut(s) 419
Eco24I GRGCYC 2 cut(s) 116, 328
Eco47I GGWCC 1 cut(s) 743
Eco53kI GAGCTC 1 cut(s) 114
EcoICRI GAGCTC 1 cut(s) 114
EcoRII CCWGG 2 cut(s) 150, 199
EcoT14I CCWWGG 1 cut(s) 320
EcoT38I GRGCYC 2 cut(s) 116, 328
ErhI CCWWGG 1 cut(s) 320
FaeI CATG 1 cut(s) 605
FalI AAGNNNNNCTT 4 cut(s) 407, 439, 783, 815
FaqI GGGAC 1 cut(s) 209
FatI CATG 1 cut(s) 601
FauNDI CATATG 1 cut(s) 220
FbaI TGATCA 1 cut(s) 253
FblI GTMKAC 1 cut(s) 717
Fnu4HI GCNGC 1 cut(s) 564
FokI GGATG 3 cut(s) 602, 609, 684
FriOI GRGCYC 2 cut(s) 116, 328
Fsp4HI GCNGC 1 cut(s) 564
FspBI CTAG 4 cut(s) 321, 431, 593, 672
GluI GCNGC 1 cut(s) 564
HaeIII GGCC 3 cut(s) 263, 419, 769
HapII CCGG 1 cut(s) 337
Hin1II CATG 1 cut(s) 605
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HindIII AAGCTT 1 cut(s) 454
HinfI GANTC 1 cut(s) 15
HpaII CCGG 1 cut(s) 337
Hpy166II GTNNAC 3 cut(s) 51, 607, 718
Hpy188I TCNGA 4 cut(s) 138, 192, 253, 747
Hpy188III TCNNGA 1 cut(s) 257
Hpy8I GTNNAC 3 cut(s) 51, 607, 718
HpyAV CCTTC 2 cut(s) 342, 430
HpyCH4III ACNGT 5 cut(s) 76, 148, 242, 377, 395
HpyCH4IV ACGT 1 cut(s) 545
HpyCH4V TGCA 3 cut(s) 109, 345, 551
HpyF10VI GCNNNNNNNGC 1 cut(s) 342
HpyF3I CTNAG 1 cut(s) 710
HpySE526I ACGT 1 cut(s) 545
Hsp92II CATG 1 cut(s) 605
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 5 cut(s) 24, 138, 192, 253, 367
LmnI GCTCC 1 cut(s) 522
Lsp1109I GCAGC 1 cut(s) 550
MaeI CTAG 4 cut(s) 321, 431, 593, 672
MaeII ACGT 1 cut(s) 545
MaeIII GTNAC 5 cut(s) 65, 203, 293, 541, 553
MalI GATC 5 cut(s) 26, 140, 194, 255, 369
MboI GATC 5 cut(s) 24, 138, 192, 253, 367
MboII GAAGA 9 cut(s) 35, 70, 104, 133, 160, 171, 248, 427, 581
MhlI GDGCHC 2 cut(s) 116, 328
MluCI AATT 2 cut(s) 651, 823
MnlI CCTC 4 cut(s) 253, 327, 536, 620
MroXI GAANNNNTTC 1 cut(s) 651
MseI TTAA 2 cut(s) 359, 575
MspI CCGG 1 cut(s) 337
MspR9I CCNGG 3 cut(s) 152, 201, 338
MvaI CCWGG 2 cut(s) 152, 201
MvnI CGCG 1 cut(s) 817
MwoI GCNNNNNNNGC 1 cut(s) 342
NciI CCSGG 1 cut(s) 338
NdeI CATATG 1 cut(s) 220
NdeII GATC 5 cut(s) 24, 138, 192, 253, 367
NlaIII CATG 1 cut(s) 605
NlaIV GGNNCC 2 cut(s) 524, 744
NmuCI GTSAC 1 cut(s) 293
NspI RCATGY 1 cut(s) 605
NspV TTCGAA 1 cut(s) 655
PceI AGGCCT 1 cut(s) 419
PdmI GAANNNNTTC 1 cut(s) 651
PfeI GAWTC 1 cut(s) 15
PkrI GCNGC 1 cut(s) 565
Ppu21I YACGTR 1 cut(s) 546
PsiI TTATAA 1 cut(s) 479
Psp124BI GAGCTC 1 cut(s) 116
Psp6I CCWGG 2 cut(s) 150, 199
PspGI CCWGG 2 cut(s) 150, 199
PspN4I GGNNCC 2 cut(s) 524, 744
PspPI GGNCC 1 cut(s) 743
PstI CTGCAG 1 cut(s) 347
RsaI GTAC 1 cut(s) 608
RsaNI GTAC 1 cut(s) 607
SacI GAGCTC 1 cut(s) 116
SaqAI TTAA 2 cut(s) 359, 575
SatI GCNGC 1 cut(s) 564
Sau3AI GATC 5 cut(s) 24, 138, 192, 253, 367
Sau96I GGNCC 1 cut(s) 743
ScrFI CCNGG 3 cut(s) 152, 201, 338
SduI GDGCHC 2 cut(s) 116, 328
SfcI CTRYAG 3 cut(s) 343, 633, 771
SfuI TTCGAA 1 cut(s) 655
SinI GGWCC 1 cut(s) 743
SpeI ACTAGT 1 cut(s) 430
Sse9I AATT 2 cut(s) 651, 823
SseBI AGGCCT 1 cut(s) 419
SsiI CCGC 1 cut(s) 815
SspMI CTAG 4 cut(s) 321, 431, 593, 672
SstI GAGCTC 1 cut(s) 116
StuI AGGCCT 1 cut(s) 419
StyD4I CCNGG 3 cut(s) 150, 199, 336
StyI CCWWGG 1 cut(s) 320
TaaI ACNGT 5 cut(s) 76, 148, 242, 377, 395
TaiI ACGT 1 cut(s) 548
TaqI TCGA 4 cut(s) 23, 90, 195, 655
TaqII GACCGA 1 cut(s) 724
TasI AATT 2 cut(s) 651, 823
TfiI GAWTC 1 cut(s) 15
Tru1I TTAA 2 cut(s) 359, 575
Tru9I TTAA 2 cut(s) 359, 575
TscAI CASTG 3 cut(s) 151, 247, 380
TseFI GTSAC 1 cut(s) 293
TseI GCWGC 1 cut(s) 563
Tsp45I GTSAC 1 cut(s) 293
TspDTI ATGAA 6 cut(s) 17, 70, 76, 207, 770, 816
TspGWI ACGGA 1 cut(s) 608
TspRI CASTG 3 cut(s) 151, 247, 380
VpaK11BI GGWCC 1 cut(s) 743
XceI RCATGY 1 cut(s) 605
XcmI CCANNNNNNNNNTGG 1 cut(s) 791
XmaJI CCTAGG 1 cut(s) 320
XmiI GTMKAC 1 cut(s) 717
XmnI GAANNNNTTC 1 cut(s) 651
XspI CTAG 4 cut(s) 321, 431, 593, 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.