MD07G1171000.v1.1

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0011310
Physical Location & Seq
Forward (+)
24658960 .. 24662512
3553 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1171000.v1.1.491

Sequence Viewer

Length: 819 bp
ATGAAGTTCGAAAGATTCCTGTCAATCCCAATCTTTATGGTGATTTTGTTAATTGGTACTGTGTGTTACATCACGGTTTTCATCTTCATCGACGGTTGGGTTGGATTGAAGAGCTCCGCTGGTTCTTTGAACGCTCTGGTTTTCATTTCCTTGGCATCTCTCTGCCTCTTCTCCTTCTTTTGCTGTGTTCTCACCGACCCAGGTCACGTTCCTGCTTCCTACGTCCCTGATGTTGAACATAGTGTGGTCTCCGATCAAGAATCTAAGAAAAATGTTCGTTGTGACAAGTGTTCTACATACAAGCCTCCCAGAACTCATCATTGCCGGGTCTGCAGAAGGTGTGTTTTAAGAATGGATCATCACTGCATGTGGATCAATAACTGTGTTGATTACTGGAACTACAAGGCATTTTTTATGCTTGCTTTATATGCAACGCTAGCATGCTTGTACTCTACAGTTATGATTATAAAGTGTGTATCTCAAAAGGACTTCGAATTCATTGGAAGTGATAGCCACAAGGTTTTTTATGTTATGTCTGGTCTAGTGATGGCTTCCTTGACGGTAATGCTTGGAGCTCTTTTAGGTTGGCATATCTACCTCATAACCAATAATATGACAACTATAGAGTATTATGAAGGAATACGAGCAGCATGGTTGGCTGGGAAATCTGGGCAAAGTTACAGACATCCATACAATCTTAGTGTACACAAAAACATCTCTTTGGTTTTGGGTCCAAGTATGCTGAAATGGTTATGTCCGACATCAGTAGGCCATCTAAAAGATGGACTCATGTTCCCTACTCCGCGTGATAGTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

273

Amino Acids

30.81

Weight (kDa)

8.71

Isoelectric Point (pI)

35.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 89 - 212 1.5e-34 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 467
AccII CGCG 1 cut(s) 805
AciI CCGC 2 cut(s) 117, 803
AclWI GGATC 2 cut(s) 363, 380
AcsI RAATTY 1 cut(s) 494
AfaI GTAC 3 cut(s) 58, 449, 705
AgsI TTSAA 3 cut(s) 109, 130, 236
AjnI CCWGG 1 cut(s) 199
AluBI AGCT 2 cut(s) 114, 575
AluI AGCT 2 cut(s) 114, 575
Alw21I GWGCWC 2 cut(s) 116, 577
Alw26I GTCTC 1 cut(s) 253
AlwI GGATC 2 cut(s) 363, 380
AoxI GGCC 1 cut(s) 769
ApeKI GCWGC 1 cut(s) 647
ApoI RAATTY 1 cut(s) 494
AspS9I GGNCC 1 cut(s) 731
AsuC2I CCSGG 1 cut(s) 326
AsuHPI GGTGA 2 cut(s) 52, 184
AsuII TTCGAA 2 cut(s) 9, 492
AsuNHI GCTAGC 1 cut(s) 436
AvaII GGWCC 1 cut(s) 731
BanII GRGCYC 2 cut(s) 116, 577
Bbv12I GWGCWC 2 cut(s) 116, 577
BbvI GCAGC 1 cut(s) 659
BccI CCATC 3 cut(s) 541, 776, 780
BciT130I CCWGG 1 cut(s) 201
BcnI CCSGG 1 cut(s) 326
BcoDI GTCTC 1 cut(s) 253
BfaI CTAG 2 cut(s) 437, 542
BfmI CTRYAG 3 cut(s) 331, 453, 621
BisI GCNGC 1 cut(s) 648
BlsI GCNGC 1 cut(s) 649
Bme1390I CCNGG 2 cut(s) 201, 326
Bme18I GGWCC 1 cut(s) 731
BmgT120I GGNCC 1 cut(s) 731
BmiI GGNNCC 1 cut(s) 732
BmrFI CCNGG 2 cut(s) 201, 326
BmsI GCATC 1 cut(s) 164
BmtI GCTAGC 1 cut(s) 440
BoxI GACNNNNGTC 1 cut(s) 201
Bpu14I TTCGAA 2 cut(s) 9, 492
BpuMI CCSGG 1 cut(s) 326
BsaI GGTCTC 1 cut(s) 253
BsaJI CCNNGG 2 cut(s) 150, 199
Bse1I ACTGG 1 cut(s) 398
Bse3DI GCAATG 1 cut(s) 319
BseBI CCWGG 1 cut(s) 201
BseDI CCNNGG 2 cut(s) 150, 199
BseGI GGATG 1 cut(s) 685
BseMI GCAATG 1 cut(s) 319
BseNI ACTGG 1 cut(s) 398
BseXI GCAGC 1 cut(s) 659
BseYI CCCAGC 1 cut(s) 659
Bsh1236I CGCG 1 cut(s) 805
BshFI GGCC 1 cut(s) 771
BsiHKAI GWGCWC 2 cut(s) 116, 577
BsiSI CCGG 1 cut(s) 325
BslFI GGGAC 1 cut(s) 209
BsmAI GTCTC 1 cut(s) 253
BsmFI GGGAC 1 cut(s) 209
BsnI GGCC 1 cut(s) 771
Bso31I GGTCTC 1 cut(s) 253
Bsp119I TTCGAA 2 cut(s) 9, 492
Bsp1286I GDGCHC 2 cut(s) 116, 577
Bsp1407I TGTACA 1 cut(s) 703
Bsp143I GATC 3 cut(s) 253, 355, 372
BspACI CCGC 2 cut(s) 117, 803
BspANI GGCC 1 cut(s) 771
BspFNI CGCG 1 cut(s) 805
BspHI TCATGA 1 cut(s) 815
BspLI GGNNCC 1 cut(s) 732
BspMAI CTGCAG 1 cut(s) 335
BspOI GCTAGC 1 cut(s) 440
BspPI GGATC 2 cut(s) 363, 380
BspQI GCTCTTC 1 cut(s) 104
BspT104I TTCGAA 2 cut(s) 9, 492
BspTNI GGTCTC 1 cut(s) 253
BsrDI GCAATG 1 cut(s) 319
BsrGI TGTACA 1 cut(s) 703
BsrI ACTGG 1 cut(s) 398
BssECI CCNNGG 2 cut(s) 150, 199
BssMI GATC 3 cut(s) 253, 355, 372
BssT1I CCWWGG 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 201
Bst4CI ACNGT 6 cut(s) 61, 76, 95, 383, 457, 562
Bst6I CTCTTC 2 cut(s) 104, 173
BstAUI TGTACA 1 cut(s) 703
BstBI TTCGAA 2 cut(s) 9, 492
BstC8I GCNNGC 3 cut(s) 420, 438, 442
BstDEI CTNAG 2 cut(s) 264, 698
BstF5I GGATG 1 cut(s) 685
BstFNI CGCG 1 cut(s) 805
BstKTI GATC 3 cut(s) 256, 358, 375
BstMAI GTCTC 1 cut(s) 253
BstMBI GATC 3 cut(s) 253, 355, 372
BstMWI GCNNNNNNNGC 4 cut(s) 330, 428, 437, 656
BstNI CCWGG 1 cut(s) 201
BstNSI RCATGY 2 cut(s) 370, 444
BstPAI GACNNNNGTC 1 cut(s) 201
BstSCI CCNGG 2 cut(s) 199, 324
BstSFI CTRYAG 3 cut(s) 331, 453, 621
BstUI CGCG 1 cut(s) 805
BstV1I GCAGC 1 cut(s) 659
BsuRI GGCC 1 cut(s) 771
BtsCI GGATG 1 cut(s) 685
BtsI GCAGTG 1 cut(s) 361
BtsIMutI CAGTG 1 cut(s) 361
Cac8I GCNNGC 3 cut(s) 420, 438, 442
CciI TCATGA 1 cut(s) 815
Cfr13I GGNCC 1 cut(s) 731
Csp6I GTAC 3 cut(s) 57, 448, 704
CviAII CATG 5 cut(s) 367, 441, 651, 790, 816
CviJI RGCY 7 cut(s) 114, 304, 513, 551, 575, 659, 771
CviKI_1 RGCY 7 cut(s) 114, 304, 513, 551, 575, 659, 771
CviQI GTAC 3 cut(s) 57, 448, 704
DdeI CTNAG 2 cut(s) 264, 698
DpnI GATC 3 cut(s) 255, 357, 374
DpnII GATC 3 cut(s) 253, 355, 372
Eam1104I CTCTTC 2 cut(s) 104, 173
EarI CTCTTC 2 cut(s) 104, 173
Ecl136II GAGCTC 2 cut(s) 114, 575
Eco130I CCWWGG 1 cut(s) 150
Eco24I GRGCYC 2 cut(s) 116, 577
Eco31I GGTCTC 1 cut(s) 253
Eco47I GGWCC 1 cut(s) 731
Eco53kI GAGCTC 2 cut(s) 114, 575
EcoICRI GAGCTC 2 cut(s) 114, 575
EcoRI GAATTC 1 cut(s) 494
EcoRII CCWGG 1 cut(s) 199
EcoT14I CCWWGG 1 cut(s) 150
EcoT38I GRGCYC 2 cut(s) 116, 577
ErhI CCWWGG 1 cut(s) 150
FaeI CATG 5 cut(s) 370, 444, 654, 793, 819
FaqI GGGAC 1 cut(s) 209
FatI CATG 5 cut(s) 366, 440, 650, 789, 815
Fnu4HI GCNGC 1 cut(s) 648
FokI GGATG 1 cut(s) 672
FriOI GRGCYC 2 cut(s) 116, 577
Fsp4HI GCNGC 1 cut(s) 648
FspBI CTAG 2 cut(s) 437, 542
GluI GCNGC 1 cut(s) 648
GsaI CCCAGC 1 cut(s) 663
HaeIII GGCC 1 cut(s) 771
HapII CCGG 1 cut(s) 325
Hin1II CATG 5 cut(s) 370, 444, 654, 793, 819
HinfI GANTC 3 cut(s) 15, 260, 786
HpaII CCGG 1 cut(s) 325
HphI GGTGA 2 cut(s) 52, 184
Hpy166II GTNNAC 2 cut(s) 704, 706
Hpy188I TCNGA 2 cut(s) 253, 759
Hpy188III TCNNGA 2 cut(s) 257, 816
Hpy8I GTNNAC 2 cut(s) 704, 706
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 3 cut(s) 184, 330, 629
HpyCH4III ACNGT 6 cut(s) 61, 76, 95, 383, 457, 562
HpyCH4IV ACGT 2 cut(s) 207, 222
HpyCH4V TGCA 3 cut(s) 333, 366, 431
HpyF10VI GCNNNNNNNGC 4 cut(s) 330, 428, 437, 656
HpyF3I CTNAG 2 cut(s) 264, 698
HpySE526I ACGT 2 cut(s) 207, 222
Hsp92II CATG 5 cut(s) 370, 444, 654, 793, 819
Kzo9I GATC 3 cut(s) 253, 355, 372
LguI GCTCTTC 1 cut(s) 104
LmnI GCTCC 2 cut(s) 119, 572
Lsp1109I GCAGC 1 cut(s) 659
LweI GCATC 1 cut(s) 164
MaeI CTAG 2 cut(s) 437, 542
MaeII ACGT 2 cut(s) 207, 222
MaeIII GTNAC 4 cut(s) 65, 203, 281, 677
MalI GATC 3 cut(s) 255, 357, 374
MboI GATC 3 cut(s) 253, 355, 372
MboII GAAGA 3 cut(s) 76, 121, 160
MhlI GDGCHC 2 cut(s) 116, 577
MluCI AATT 2 cut(s) 51, 494
MlyI GAGTC 1 cut(s) 780
MmeI TCCRAC 2 cut(s) 82, 782
MnlI CCTC 3 cut(s) 176, 315, 608
MseI TTAA 2 cut(s) 50, 347
MspA1I CMGCKG 1 cut(s) 119
MspI CCGG 1 cut(s) 325
MspR9I CCNGG 2 cut(s) 201, 326
MvaI CCWGG 1 cut(s) 201
MvnI CGCG 1 cut(s) 805
MwoI GCNNNNNNNGC 4 cut(s) 330, 428, 437, 656
NciI CCSGG 1 cut(s) 326
NdeII GATC 3 cut(s) 253, 355, 372
NheI GCTAGC 1 cut(s) 436
NlaIII CATG 5 cut(s) 370, 444, 654, 793, 819
NlaIV GGNNCC 1 cut(s) 732
NmuCI GTSAC 2 cut(s) 203, 281
NspI RCATGY 2 cut(s) 370, 444
NspV TTCGAA 2 cut(s) 9, 492
PaeI GCATGC 1 cut(s) 444
PagI TCATGA 1 cut(s) 815
PciSI GCTCTTC 1 cut(s) 104
PfeI GAWTC 2 cut(s) 15, 260
PkrI GCNGC 1 cut(s) 649
PleI GAGTC 1 cut(s) 780
PpsI GAGTC 1 cut(s) 780
PshAI GACNNNNGTC 1 cut(s) 201
PsiI TTATAA 1 cut(s) 467
Psp124BI GAGCTC 2 cut(s) 116, 577
Psp6I CCWGG 1 cut(s) 199
PspFI CCCAGC 1 cut(s) 659
PspGI CCWGG 1 cut(s) 199
PspN4I GGNNCC 1 cut(s) 732
PspPI GGNCC 1 cut(s) 731
PstI CTGCAG 1 cut(s) 335
RsaI GTAC 3 cut(s) 58, 449, 705
RsaNI GTAC 3 cut(s) 57, 448, 704
SacI GAGCTC 2 cut(s) 116, 577
SapI GCTCTTC 1 cut(s) 104
SaqAI TTAA 2 cut(s) 50, 347
SatI GCNGC 1 cut(s) 648
Sau3AI GATC 3 cut(s) 253, 355, 372
Sau96I GGNCC 1 cut(s) 731
SchI GAGTC 1 cut(s) 780
ScrFI CCNGG 2 cut(s) 201, 326
SduI GDGCHC 2 cut(s) 116, 577
SetI ASST 9 cut(s) 116, 205, 210, 225, 341, 522, 577, 586, 600
SfaNI GCATC 1 cut(s) 164
SfcI CTRYAG 3 cut(s) 331, 453, 621
SfuI TTCGAA 2 cut(s) 9, 492
SinI GGWCC 1 cut(s) 731
SphI GCATGC 1 cut(s) 444
Sse9I AATT 2 cut(s) 51, 494
SsiI CCGC 2 cut(s) 117, 803
SspMI CTAG 2 cut(s) 437, 542
SstI GAGCTC 2 cut(s) 116, 577
StyD4I CCNGG 2 cut(s) 199, 324
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 6 cut(s) 61, 76, 95, 383, 457, 562
TaiI ACGT 2 cut(s) 210, 225
TaqI TCGA 3 cut(s) 9, 90, 492
TasI AATT 2 cut(s) 51, 494
TatI WGTACW 2 cut(s) 447, 703
TfiI GAWTC 2 cut(s) 15, 260
Tru1I TTAA 2 cut(s) 50, 347
Tru9I TTAA 2 cut(s) 50, 347
TscAI CASTG 1 cut(s) 368
TseFI GTSAC 2 cut(s) 203, 281
TseI GCWGC 1 cut(s) 647
Tsp45I GTSAC 2 cut(s) 203, 281
TspDTI ATGAA 7 cut(s) 17, 70, 76, 133, 487, 648, 804
TspRI CASTG 1 cut(s) 368
VpaK11BI GGWCC 1 cut(s) 731
XapI RAATTY 1 cut(s) 494
XceI RCATGY 2 cut(s) 370, 444
XcmI CCANNNNNNNNNTGG 1 cut(s) 779
XspI CTAG 2 cut(s) 437, 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.