Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0011310

Physical Location & Seq

Genomic Coordinates Reverse (-)

41731101 .. 41734793

Gene Structure 3693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0301300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAAAGGGAAAGGAAGTTGCAAAAGTTGGAGTTACGAGGAGAAGGAGAAAGCCCTTTTGCTATCCAAGAGCATTGATGCCTTAGGGAAATATAAGCTTCCGGAGGGTGCATATTCTCTTTTGCAGTCATCAAAAGATATTGGCCAGGTTGCTTATGTAAAAAATGATCCAAGTGGTGGAAGTGAGGTTGAAACATCAGGACCTGGAGGACCTGTACCAGCAAGGTTTTTCTTCCATGCTCAAACCTTGAGGTTGCCCGATCAAGAGAGGACGTCCGCACTTTCGCTAAAGTGCGGACGACGGCGTTGCAGCCCCGCTCAGGCCTCGACGGCCGCGCGAATCGGGCTGGAAGGAGGCCAGAAGCATCCCAGACGGCTTCTGGACAGCTATCAAGGTCGGAGGAGGTCGAGGTTGCAGGTTTCTGGGCACCAACCTCACCTGCAACTGCAACCTGACTTGCAGCGCTGCAACCTCATCGCCGGCGACTTCACCCGACTGCAGCCTGGTCCGTCCGACCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHHC

Protein Analysis

173

Amino Acids

18.94

Weight (kDa)

9.79

Isoelectric Point (pI)

64.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04270
fragaria_vesca	FvH4_7g18860
malus_domestica	MD01G1104200.v1.1 MD07G1171000.v1.1
prunus_persica	Prupe.2G209800_v2.0.a1 Prupe.2G209800_v2.0.a1 Prupe.2G209800_v2.0.a1
pyrus_communis	pycom01g13090 pycom07g16470
rosa_chinensis	RchiOBHm_Chr1g0362791
rosa_laevigata	RLG00000027621
rosa_multiflora	Rmu_co8462993.1_g000001 Rmu_sc0000046.1_g000004
rosa_roxburghii	Rroxscaffold_4G00293760
rosa_rugosa	Rorug01G0301300
rosa_samantha	Rh1AG310100 Rh1BG273500 Rh1CG290600 Rh1DG304200
rosa_wichuraiana	Rw1G027510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	447
AatII	GACGTC	1 cut(s)	275
Acc36I	ACCTGC	2 cut(s)	406, 447
AccB1I	GGYRCC	1 cut(s)	426
AccB7I	CCANNNNNTGG	1 cut(s)	176
AccBSI	CCGCTC	1 cut(s)	317
AccII	CGCG	2 cut(s)	335, 337
AccIII	TCCGGA	1 cut(s)	100
AciI	CCGC	4 cut(s)	276, 294, 315, 333
AclWI	GGATC	1 cut(s)	161
AcoI	YGGCCR	2 cut(s)	142, 330
AcyI	GRCGYC	1 cut(s)	272
AfaI	GTAC	1 cut(s)	216
AfeI	AGCGCT	1 cut(s)	464
AfiI	CCNNNNNNNGG	2 cut(s)	176, 319
AgsI	TTSAA	1 cut(s)	191
AjnI	CCWGG	3 cut(s)	144, 202, 502
AluBI	AGCT	2 cut(s)	97, 387
AluI	AGCT	2 cut(s)	97, 387
AlwI	GGATC	1 cut(s)	161
AlwNI	CAGNNNCTG	1 cut(s)	203
Aor13HI	TCCGGA	1 cut(s)	100
Aor51HI	AGCGCT	1 cut(s)	464
AoxI	GGCC	4 cut(s)	142, 321, 330, 355
ApeKI	GCWGC	4 cut(s)	309, 460, 465, 499
AspLEI	GCGC	2 cut(s)	337, 465
AspS9I	GGNCC	3 cut(s)	200, 209, 506
AsuHPI	GGTGA	2 cut(s)	428, 481
AvaII	GGWCC	3 cut(s)	200, 209, 506
AxyI	CCTNAGG	1 cut(s)	82
BaeGI	GKGCMC	1 cut(s)	429
BalI	TGGCCA	1 cut(s)	144
BanI	GGYRCC	1 cut(s)	426
BbvI	GCAGC	4 cut(s)	321, 452, 472, 511
BceAI	ACGGC	3 cut(s)	317, 345, 389
BcgI	CGANNNNNNTGC	4 cut(s)	288, 322, 457, 491
BciT130I	CCWGG	3 cut(s)	146, 204, 504
BfaI	CTAG	1 cut(s)	520
BfmI	CTRYAG	1 cut(s)	497
BfoI	RGCGCY	1 cut(s)	466
BfuAI	ACCTGC	2 cut(s)	406, 447
BglI	GCCNNNNNGGC	1 cut(s)	329
BisI	GCNGC	5 cut(s)	310, 333, 461, 466, 500
BlsI	GCNGC	5 cut(s)	311, 334, 462, 467, 501
Bme1390I	CCNGG	3 cut(s)	146, 204, 504
Bme18I	GGWCC	3 cut(s)	200, 209, 506
BmgT120I	GGNCC	3 cut(s)	200, 209, 506
BmiI	GGNNCC	1 cut(s)	428
BmrFI	CCNGG	3 cut(s)	146, 204, 504
BmsI	GCATC	2 cut(s)	67, 373
BpmI	CTGGAG	1 cut(s)	225
Bpu10I	CCTNAGC	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	268
BsaHI	GRCGYC	1 cut(s)	272
BsaWI	WCCGGW	1 cut(s)	100
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bsc4I	CCNNNNNNNGG	2 cut(s)	176, 319
Bse118I	RCCGGY	1 cut(s)	479
Bse21I	CCTNAGG	1 cut(s)	82
BseAI	TCCGGA	1 cut(s)	100
BseBI	CCWGG	3 cut(s)	146, 204, 504
BseGI	GGATG	1 cut(s)	364
BseLI	CCNNNNNNNGG	2 cut(s)	176, 319
BseMII	CTCAG	1 cut(s)	332
BseRI	GAGGAG	2 cut(s)	53, 415
BseSI	GKGCMC	1 cut(s)	429
BseX3I	CGGCCG	1 cut(s)	330
BseXI	GCAGC	4 cut(s)	321, 452, 472, 511
Bsh1236I	CGCG	2 cut(s)	335, 337
Bsh1285I	CGRYCG	1 cut(s)	333
BshFI	GGCC	4 cut(s)	144, 323, 332, 357
BshNI	GGYRCC	1 cut(s)	426
BsiEI	CGRYCG	1 cut(s)	333
BsiSI	CCGG	2 cut(s)	101, 480
BslI	CCNNNNNNNGG	2 cut(s)	176, 319
BsnI	GGCC	4 cut(s)	144, 323, 332, 357
Bsp1286I	GDGCHC	1 cut(s)	429
Bsp13I	TCCGGA	1 cut(s)	100
Bsp143I	GATC	2 cut(s)	166, 259
BspACI	CCGC	4 cut(s)	276, 294, 315, 333
BspANI	GGCC	4 cut(s)	144, 323, 332, 357
BspCNI	CTCAG	1 cut(s)	331
BspEI	TCCGGA	1 cut(s)	100
BspFNI	CGCG	2 cut(s)	335, 337
BspLI	GGNNCC	1 cut(s)	428
BspMAI	CTGCAG	1 cut(s)	501
BspMI	ACCTGC	2 cut(s)	406, 447
BspPI	GGATC	1 cut(s)	161
BspT107I	GGYRCC	1 cut(s)	426
BsrBI	CCGCTC	1 cut(s)	317
BsrFI	RCCGGY	1 cut(s)	479
BssAI	RCCGGY	1 cut(s)	479
BssMI	GATC	2 cut(s)	166, 259
BssNI	GRCGYC	1 cut(s)	272
Bst2UI	CCWGG	3 cut(s)	146, 204, 504
BstACI	GRCGYC	1 cut(s)	272
BstC8I	GCNNGC	1 cut(s)	481
BstDEI	CTNAG	2 cut(s)	82, 318
BstF5I	GGATG	1 cut(s)	364
BstFNI	CGCG	2 cut(s)	335, 337
BstH2I	RGCGCY	1 cut(s)	466
BstHHI	GCGC	2 cut(s)	337, 465
BstKTI	GATC	2 cut(s)	169, 262
BstMBI	GATC	2 cut(s)	166, 259
BstMCI	CGRYCG	1 cut(s)	333
BstMWI	GCNNNNNNNGC	2 cut(s)	329, 343
BstNI	CCWGG	3 cut(s)	146, 204, 504
BstSCI	CCNGG	3 cut(s)	144, 202, 502
BstSFI	CTRYAG	1 cut(s)	497
BstSLI	GKGCMC	1 cut(s)	429
BstUI	CGCG	2 cut(s)	335, 337
BstV1I	GCAGC	4 cut(s)	321, 452, 472, 511
BstZI	CGGCCG	1 cut(s)	330
Bsu36I	CCTNAGG	1 cut(s)	82
BsuRI	GGCC	4 cut(s)	144, 323, 332, 357
BtgZI	GCGATG	1 cut(s)	460
BtsCI	GGATG	1 cut(s)	364
BveI	ACCTGC	2 cut(s)	406, 447
Cac8I	GCNNGC	1 cut(s)	481
CaiI	CAGNNNCTG	1 cut(s)	203
CfoI	GCGC	2 cut(s)	337, 465
Cfr10I	RCCGGY	1 cut(s)	479
Cfr13I	GGNCC	3 cut(s)	200, 209, 506
Csp6I	GTAC	1 cut(s)	215
CviAII	CATG	1 cut(s)	236
CviQI	GTAC	1 cut(s)	215
DdeI	CTNAG	2 cut(s)	82, 318
DpnI	GATC	2 cut(s)	168, 261
DpnII	GATC	2 cut(s)	166, 259
EaeI	YGGCCR	2 cut(s)	142, 330
EagI	CGGCCG	1 cut(s)	330
EclXI	CGGCCG	1 cut(s)	330
Eco147I	AGGCCT	1 cut(s)	323
Eco47I	GGWCC	3 cut(s)	200, 209, 506
Eco47III	AGCGCT	1 cut(s)	464
Eco52I	CGGCCG	1 cut(s)	330
Eco81I	CCTNAGG	1 cut(s)	82
EcoO109I	RGGNCCY	2 cut(s)	200, 209
EcoRII	CCWGG	3 cut(s)	144, 202, 502
FaeI	CATG	1 cut(s)	239
FaiI	YATR	4 cut(s)	93, 112, 156, 237
FatI	CATG	1 cut(s)	235
FauI	CCCGC	1 cut(s)	322
Fnu4HI	GCNGC	5 cut(s)	310, 333, 461, 466, 500
FokI	GGATG	1 cut(s)	351
Fsp4HI	GCNGC	5 cut(s)	310, 333, 461, 466, 500
FspBI	CTAG	1 cut(s)	520
GlaI	GCGC	2 cut(s)	336, 464
GluI	GCNGC	5 cut(s)	310, 333, 461, 466, 500
GsuI	CTGGAG	1 cut(s)	225
HaeII	RGCGCY	1 cut(s)	466
HaeIII	GGCC	4 cut(s)	144, 323, 332, 357
HapII	CCGG	2 cut(s)	101, 480
HhaI	GCGC	2 cut(s)	337, 465
Hin1I	GRCGYC	1 cut(s)	272
Hin1II	CATG	1 cut(s)	239
Hin6I	GCGC	2 cut(s)	335, 463
HinP1I	GCGC	2 cut(s)	335, 463
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	1 cut(s)	339
HpaII	CCGG	2 cut(s)	101, 480
HphI	GGTGA	2 cut(s)	428, 481
Hpy188I	TCNGA	2 cut(s)	399, 514
Hpy188III	TCNNGA	4 cut(s)	101, 198, 263, 380
Hpy99I	CGWCG	2 cut(s)	303, 331
HpyAV	CCTTC	2 cut(s)	37, 344
HpyCH4IV	ACGT	1 cut(s)	272
HpyF10VI	GCNNNNNNNGC	2 cut(s)	329, 343
HpyF3I	CTNAG	2 cut(s)	82, 318
HpySE526I	ACGT	1 cut(s)	272
Hsp92I	GRCGYC	1 cut(s)	272
Hsp92II	CATG	1 cut(s)	239
HspAI	GCGC	2 cut(s)	335, 463
Kpn2I	TCCGGA	1 cut(s)	100
KroI	GCCGGC	1 cut(s)	479
KroNI	GCCGGC	1 cut(s)	481
Kzo9I	GATC	2 cut(s)	166, 259
Lsp1109I	GCAGC	4 cut(s)	321, 452, 472, 511
LweI	GCATC	2 cut(s)	67, 373
MaeI	CTAG	1 cut(s)	520
MaeII	ACGT	1 cut(s)	272
MaeIII	GTNAC	1 cut(s)	32
MalI	GATC	2 cut(s)	168, 261
MbiI	CCGCTC	1 cut(s)	317
MboI	GATC	2 cut(s)	166, 259
MboII	GAAGA	1 cut(s)	223
MhlI	GDGCHC	1 cut(s)	429
MlsI	TGGCCA	1 cut(s)	144
MluNI	TGGCCA	1 cut(s)	144
MmeI	TCCRAC	2 cut(s)	8, 377
Mox20I	TGGCCA	1 cut(s)	144
MreI	CGCCGGCG	1 cut(s)	479
MroI	TCCGGA	1 cut(s)	100
MroNI	GCCGGC	1 cut(s)	479
MscI	TGGCCA	1 cut(s)	144
Msp20I	TGGCCA	1 cut(s)	144
MspI	CCGG	2 cut(s)	101, 480
MspR9I	CCNGG	3 cut(s)	146, 204, 504
MvaI	CCWGG	3 cut(s)	146, 204, 504
MvnI	CGCG	2 cut(s)	335, 337
MwoI	GCNNNNNNNGC	2 cut(s)	329, 343
NaeI	GCCGGC	1 cut(s)	481
NdeII	GATC	2 cut(s)	166, 259
NgoMIV	GCCGGC	1 cut(s)	479
NlaIII	CATG	1 cut(s)	239
NlaIV	GGNNCC	1 cut(s)	428
PaqCI	CACCTGC	1 cut(s)	447
PceI	AGGCCT	1 cut(s)	323
PdiI	GCCGGC	1 cut(s)	481
PfeI	GAWTC	1 cut(s)	339
PflMI	CCANNNNNTGG	1 cut(s)	176
PkrI	GCNGC	5 cut(s)	311, 334, 462, 467, 501
PpuMI	RGGWCCY	2 cut(s)	200, 209
Psp5II	RGGWCCY	2 cut(s)	200, 209
Psp6I	CCWGG	3 cut(s)	144, 202, 502
PspGI	CCWGG	3 cut(s)	144, 202, 502
PspN4I	GGNNCC	1 cut(s)	428
PspPI	GGNCC	3 cut(s)	200, 209, 506
PspPPI	RGGWCCY	2 cut(s)	200, 209
PstI	CTGCAG	1 cut(s)	501
PstNI	CAGNNNCTG	1 cut(s)	203
RsaI	GTAC	1 cut(s)	216
RsaNI	GTAC	1 cut(s)	215
SatI	GCNGC	5 cut(s)	310, 333, 461, 466, 500
Sau3AI	GATC	2 cut(s)	166, 259
Sau96I	GGNCC	3 cut(s)	200, 209, 506
ScrFI	CCNGG	3 cut(s)	146, 204, 504
SduI	GDGCHC	1 cut(s)	429
SfaNI	GCATC	2 cut(s)	67, 373
SfcI	CTRYAG	1 cut(s)	497
SfiI	GGCCNNNNNGGCC	1 cut(s)	329
SgrAI	CRCCGGYG	1 cut(s)	479
SinI	GGWCC	3 cut(s)	200, 209, 506
SmlI	CTYRAG	1 cut(s)	247
SmoI	CTYRAG	1 cut(s)	247
SseBI	AGGCCT	1 cut(s)	323
SsiI	CCGC	4 cut(s)	276, 294, 315, 333
SspMI	CTAG	1 cut(s)	520
StuI	AGGCCT	1 cut(s)	323
StyD4I	CCNGG	3 cut(s)	144, 202, 502
TaiI	ACGT	1 cut(s)	275
TaqI	TCGA	2 cut(s)	326, 407
TauI	GCSGC	1 cut(s)	335
TfiI	GAWTC	1 cut(s)	339
TseI	GCWGC	4 cut(s)	309, 460, 465, 499
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	498
Van91I	CCANNNNNTGG	1 cut(s)	176
VpaK11BI	GGWCC	3 cut(s)	200, 209, 506
XcmI	CCANNNNNNNNNTGG	1 cut(s)	376
XspI	CTAG	1 cut(s)	520
ZraI	GACGTC	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.