Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0011310

Physical Location & Seq

Genomic Coordinates Forward (+)

18907128 .. 18910182

Gene Structure 3055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g16470.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGACAAAATTAAAACTAAACTACAGGGAAATTGCTCTGACCTTACTCGGATTCAGAATTCCCGGGAAATAGACTTCCCAGAAAAACAAGGGAAAACTTTTCTATTGATTCCATCTCCCCCAAAACCCACGATGAAGTTCGAAAGATTCCTGTCAATCCCAATCTTTATGGTGATTTTGTTAATTGGTACTGTGTGTTACATCACGGTTTTCATCTTCATCGACGGTTGGGTTGGATTGAAGAGCTCCGCTGGTTCTTTGAACGCTCTGGTTTTCATTTCCTTGGCATCTCTCTGCCTCTTCTCCTTCTTTTGCTGTGTTCTCATCGACCCAGGTCACGTTCCTGCTTCCTACGTCCCTGATGTTGAACATAGTGTGGTCTCCGATCAAGAATCTAAGAAAAATGTTCGCTGTGACAAGTGTTCTACATTCAAGCCTCCCAGAACTCATCATTGCCGGGTCTGCAGAAGGTGTGTTTTAAGAATGGATCATCACTGCATGTGGATCAATAACTGTGTTGGTTACTGGAACTACAAGGCATTTTTTATGCTTGTTTTATATGCAACGCTAGGATGCCTGTACTCTACAGTTATGATTATAAAGTGTGTATCTCAAAAGGACTTCGAATTCATTGCAAGTGATAGCCACAAGATTTTTTATGTTATGTCTGGTCTAGTGATGGCTTCCTTGACGGTAATGCTTGGAGCTCTTTTAGGTTGGCATATCTACCTCATAACCAATAATATGACAACTATAGAGTATTATGAAGGAATACGGGCAGCATGGTTAGCTGGGAAATCTGGGAAAAGTTACAGACATCCATACAATCTTAGTGTACACAAAAACATCTCTTCGGTTTTGGGTCCAAGTATGCTGAAATGGTTATGTCCGACATCAGTAGGCCATCTAAAAGATGGACTCATCTTCCCTACTCCGCGTGATAGTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHHC

Protein Analysis

317

Amino Acids

35.74

Weight (kDa)

9.03

Isoelectric Point (pI)

34.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04270
fragaria_vesca	FvH4_7g18860
malus_domestica	MD01G1104200.v1.1 MD07G1171000.v1.1
prunus_persica	Prupe.2G209800_v2.0.a1 Prupe.2G209800_v2.0.a1 Prupe.2G209800_v2.0.a1
pyrus_communis	pycom01g13090 pycom07g16470
rosa_chinensis	RchiOBHm_Chr1g0362791
rosa_laevigata	RLG00000027621
rosa_multiflora	Rmu_co8462993.1_g000001 Rmu_sc0000046.1_g000004
rosa_roxburghii	Rroxscaffold_4G00293760
rosa_rugosa	Rorug01G0301300
rosa_samantha	Rh1AG310100 Rh1BG273500 Rh1CG290600 Rh1DG304200
rosa_wichuraiana	Rw1G027510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	599
AccII	CGCG	1 cut(s)	937
AciI	CCGC	2 cut(s)	249, 935
AclWI	GGATC	2 cut(s)	495, 512
AcsI	RAATTY	2 cut(s)	58, 626
AfaI	GTAC	3 cut(s)	190, 581, 837
AgsI	TTSAA	4 cut(s)	241, 262, 368, 433
AjnI	CCWGG	1 cut(s)	331
AluBI	AGCT	3 cut(s)	246, 707, 791
AluI	AGCT	3 cut(s)	246, 707, 791
Alw21I	GWGCWC	2 cut(s)	248, 709
Alw26I	GTCTC	1 cut(s)	385
AlwI	GGATC	2 cut(s)	495, 512
Ama87I	CYCGRG	1 cut(s)	63
AoxI	GGCC	1 cut(s)	901
ApeKI	GCWGC	1 cut(s)	779
ApoI	RAATTY	2 cut(s)	58, 626
AspS9I	GGNCC	1 cut(s)	863
AsuC2I	CCSGG	3 cut(s)	64, 65, 458
AsuHPI	GGTGA	1 cut(s)	184
AsuII	TTCGAA	2 cut(s)	141, 624
AvaI	CYCGRG	1 cut(s)	63
AvaII	GGWCC	1 cut(s)	863
BanII	GRGCYC	2 cut(s)	248, 709
Bbv12I	GWGCWC	2 cut(s)	248, 709
BbvI	GCAGC	1 cut(s)	791
BccI	CCATC	4 cut(s)	121, 673, 908, 912
BcgI	CGANNNNNNTGC	2 cut(s)	614, 648
BciT130I	CCWGG	1 cut(s)	333
BcnI	CCSGG	3 cut(s)	64, 65, 458
BcoDI	GTCTC	1 cut(s)	385
BfaI	CTAG	2 cut(s)	569, 674
BfmI	CTRYAG	4 cut(s)	23, 463, 585, 753
BisI	GCNGC	1 cut(s)	780
BlsI	GCNGC	1 cut(s)	781
Bme1390I	CCNGG	4 cut(s)	64, 65, 333, 458
Bme18I	GGWCC	1 cut(s)	863
BmeT110I	CYCGRG	1 cut(s)	63
BmgT120I	GGNCC	1 cut(s)	863
BmiI	GGNNCC	1 cut(s)	864
BmrFI	CCNGG	4 cut(s)	64, 65, 333, 458
BmsI	GCATC	2 cut(s)	296, 563
BoxI	GACNNNNGTC	1 cut(s)	333
Bpu14I	TTCGAA	2 cut(s)	141, 624
BpuMI	CCSGG	3 cut(s)	64, 65, 458
BsaI	GGTCTC	1 cut(s)	385
BsaJI	CCNNGG	3 cut(s)	63, 282, 331
Bse1I	ACTGG	1 cut(s)	530
Bse3DI	GCAATG	2 cut(s)	451, 630
BseBI	CCWGG	1 cut(s)	333
BseDI	CCNNGG	3 cut(s)	63, 282, 331
BseGI	GGATG	2 cut(s)	578, 817
BseMI	GCAATG	2 cut(s)	451, 630
BseNI	ACTGG	1 cut(s)	530
BseXI	GCAGC	1 cut(s)	791
BseYI	CCCAGC	1 cut(s)	791
Bsh1236I	CGCG	1 cut(s)	937
BshFI	GGCC	1 cut(s)	903
BsiHKAI	GWGCWC	2 cut(s)	248, 709
BsiHKCI	CYCGRG	1 cut(s)	63
BsiSI	CCGG	2 cut(s)	64, 457
BslFI	GGGAC	1 cut(s)	341
BsmAI	GTCTC	1 cut(s)	385
BsmFI	GGGAC	1 cut(s)	341
BsnI	GGCC	1 cut(s)	903
Bso31I	GGTCTC	1 cut(s)	385
BsoBI	CYCGRG	1 cut(s)	63
Bsp119I	TTCGAA	2 cut(s)	141, 624
Bsp1286I	GDGCHC	2 cut(s)	248, 709
Bsp1407I	TGTACA	1 cut(s)	835
Bsp143I	GATC	3 cut(s)	385, 487, 504
BspACI	CCGC	2 cut(s)	249, 935
BspANI	GGCC	1 cut(s)	903
BspFNI	CGCG	1 cut(s)	937
BspHI	TCATGA	1 cut(s)	947
BspLI	GGNNCC	1 cut(s)	864
BspMAI	CTGCAG	1 cut(s)	467
BspPI	GGATC	2 cut(s)	495, 512
BspQI	GCTCTTC	1 cut(s)	236
BspT104I	TTCGAA	2 cut(s)	141, 624
BspTNI	GGTCTC	1 cut(s)	385
BsrDI	GCAATG	2 cut(s)	451, 630
BsrGI	TGTACA	1 cut(s)	835
BsrI	ACTGG	1 cut(s)	530
BssECI	CCNNGG	3 cut(s)	63, 282, 331
BssMI	GATC	3 cut(s)	385, 487, 504
BssT1I	CCWWGG	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	333
Bst4CI	ACNGT	6 cut(s)	193, 208, 227, 515, 589, 694
Bst6I	CTCTTC	3 cut(s)	236, 305, 856
BstAUI	TGTACA	1 cut(s)	835
BstBI	TTCGAA	2 cut(s)	141, 624
BstDEI	CTNAG	2 cut(s)	396, 830
BstF5I	GGATG	2 cut(s)	578, 817
BstFNI	CGCG	1 cut(s)	937
BstKTI	GATC	3 cut(s)	388, 490, 507
BstMAI	GTCTC	1 cut(s)	385
BstMBI	GATC	3 cut(s)	385, 487, 504
BstMWI	GCNNNNNNNGC	2 cut(s)	462, 788
BstNI	CCWGG	1 cut(s)	333
BstNSI	RCATGY	1 cut(s)	502
BstPAI	GACNNNNGTC	1 cut(s)	333
BstSCI	CCNGG	4 cut(s)	62, 63, 331, 456
BstSFI	CTRYAG	4 cut(s)	23, 463, 585, 753
BstUI	CGCG	1 cut(s)	937
BstV1I	GCAGC	1 cut(s)	791
BsuRI	GGCC	1 cut(s)	903
BtsCI	GGATG	2 cut(s)	578, 817
BtsI	GCAGTG	1 cut(s)	493
BtsIMutI	CAGTG	1 cut(s)	493
CciI	TCATGA	1 cut(s)	947
Cfr13I	GGNCC	1 cut(s)	863
Cfr9I	CCCGGG	1 cut(s)	63
Csp6I	GTAC	3 cut(s)	189, 580, 836
CviAII	CATG	3 cut(s)	499, 783, 948
CviJI	RGCY	7 cut(s)	246, 436, 645, 683, 707, 791, 903
CviKI_1	RGCY	7 cut(s)	246, 436, 645, 683, 707, 791, 903
CviQI	GTAC	3 cut(s)	189, 580, 836
DdeI	CTNAG	2 cut(s)	396, 830
DpnI	GATC	3 cut(s)	387, 489, 506
DpnII	GATC	3 cut(s)	385, 487, 504
Eam1104I	CTCTTC	3 cut(s)	236, 305, 856
EarI	CTCTTC	3 cut(s)	236, 305, 856
Ecl136II	GAGCTC	2 cut(s)	246, 707
Eco130I	CCWWGG	1 cut(s)	282
Eco24I	GRGCYC	2 cut(s)	248, 709
Eco31I	GGTCTC	1 cut(s)	385
Eco47I	GGWCC	1 cut(s)	863
Eco53kI	GAGCTC	2 cut(s)	246, 707
Eco88I	CYCGRG	1 cut(s)	63
EcoICRI	GAGCTC	2 cut(s)	246, 707
EcoRI	GAATTC	2 cut(s)	58, 626
EcoRII	CCWGG	1 cut(s)	331
EcoT14I	CCWWGG	1 cut(s)	282
EcoT38I	GRGCYC	2 cut(s)	248, 709
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	3 cut(s)	502, 786, 951
FaqI	GGGAC	1 cut(s)	341
FatI	CATG	3 cut(s)	498, 782, 947
Fnu4HI	GCNGC	1 cut(s)	780
FokI	GGATG	2 cut(s)	585, 804
FriOI	GRGCYC	2 cut(s)	248, 709
Fsp4HI	GCNGC	1 cut(s)	780
FspBI	CTAG	2 cut(s)	569, 674
GluI	GCNGC	1 cut(s)	780
GsaI	CCCAGC	1 cut(s)	795
HaeIII	GGCC	1 cut(s)	903
HapII	CCGG	2 cut(s)	64, 457
Hin1II	CATG	3 cut(s)	502, 786, 951
HinfI	GANTC	5 cut(s)	52, 109, 147, 392, 918
HpaII	CCGG	2 cut(s)	64, 457
HphI	GGTGA	1 cut(s)	184
Hpy166II	GTNNAC	2 cut(s)	836, 838
Hpy188I	TCNGA	5 cut(s)	40, 51, 57, 385, 891
Hpy188III	TCNNGA	2 cut(s)	389, 948
Hpy8I	GTNNAC	2 cut(s)	836, 838
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	3 cut(s)	316, 462, 761
HpyCH4III	ACNGT	6 cut(s)	193, 208, 227, 515, 589, 694
HpyCH4IV	ACGT	2 cut(s)	339, 354
HpyCH4V	TGCA	4 cut(s)	465, 498, 563, 635
HpyF10VI	GCNNNNNNNGC	2 cut(s)	462, 788
HpyF3I	CTNAG	2 cut(s)	396, 830
HpySE526I	ACGT	2 cut(s)	339, 354
Hsp92II	CATG	3 cut(s)	502, 786, 951
Kzo9I	GATC	3 cut(s)	385, 487, 504
LguI	GCTCTTC	1 cut(s)	236
LmnI	GCTCC	2 cut(s)	251, 704
Lsp1109I	GCAGC	1 cut(s)	791
LweI	GCATC	2 cut(s)	296, 563
MaeI	CTAG	2 cut(s)	569, 674
MaeII	ACGT	2 cut(s)	339, 354
MaeIII	GTNAC	5 cut(s)	197, 335, 413, 521, 809
MalI	GATC	3 cut(s)	387, 489, 506
MboI	GATC	3 cut(s)	385, 487, 504
MboII	GAAGA	5 cut(s)	208, 253, 292, 843, 916
MhlI	GDGCHC	2 cut(s)	248, 709
MluCI	AATT	5 cut(s)	9, 31, 58, 183, 626
MlyI	GAGTC	1 cut(s)	912
MmeI	TCCRAC	2 cut(s)	214, 914
MnlI	CCTC	3 cut(s)	308, 447, 740
MseI	TTAA	3 cut(s)	12, 182, 479
MspA1I	CMGCKG	1 cut(s)	251
MspI	CCGG	2 cut(s)	64, 457
MspR9I	CCNGG	4 cut(s)	64, 65, 333, 458
MvaI	CCWGG	1 cut(s)	333
MvnI	CGCG	1 cut(s)	937
MwoI	GCNNNNNNNGC	2 cut(s)	462, 788
NciI	CCSGG	3 cut(s)	64, 65, 458
NdeII	GATC	3 cut(s)	385, 487, 504
NlaIII	CATG	3 cut(s)	502, 786, 951
NlaIV	GGNNCC	1 cut(s)	864
NmuCI	GTSAC	2 cut(s)	335, 413
NspI	RCATGY	1 cut(s)	502
NspV	TTCGAA	2 cut(s)	141, 624
PagI	TCATGA	1 cut(s)	947
PciSI	GCTCTTC	1 cut(s)	236
PfeI	GAWTC	4 cut(s)	52, 109, 147, 392
PkrI	GCNGC	1 cut(s)	781
PleI	GAGTC	1 cut(s)	912
PpsI	GAGTC	1 cut(s)	912
PshAI	GACNNNNGTC	1 cut(s)	333
PsiI	TTATAA	1 cut(s)	599
Psp124BI	GAGCTC	2 cut(s)	248, 709
Psp6I	CCWGG	1 cut(s)	331
PspFI	CCCAGC	1 cut(s)	791
PspGI	CCWGG	1 cut(s)	331
PspN4I	GGNNCC	1 cut(s)	864
PspPI	GGNCC	1 cut(s)	863
PstI	CTGCAG	1 cut(s)	467
RsaI	GTAC	3 cut(s)	190, 581, 837
RsaNI	GTAC	3 cut(s)	189, 580, 836
SacI	GAGCTC	2 cut(s)	248, 709
SapI	GCTCTTC	1 cut(s)	236
SaqAI	TTAA	3 cut(s)	12, 182, 479
SatI	GCNGC	1 cut(s)	780
Sau3AI	GATC	3 cut(s)	385, 487, 504
Sau96I	GGNCC	1 cut(s)	863
SchI	GAGTC	1 cut(s)	912
ScrFI	CCNGG	4 cut(s)	64, 65, 333, 458
SduI	GDGCHC	2 cut(s)	248, 709
SfaNI	GCATC	2 cut(s)	296, 563
SfcI	CTRYAG	4 cut(s)	23, 463, 585, 753
SfuI	TTCGAA	2 cut(s)	141, 624
SinI	GGWCC	1 cut(s)	863
SmaI	CCCGGG	1 cut(s)	65
Sse9I	AATT	5 cut(s)	9, 31, 58, 183, 626
SsiI	CCGC	2 cut(s)	249, 935
SspMI	CTAG	2 cut(s)	569, 674
SstI	GAGCTC	2 cut(s)	248, 709
StyD4I	CCNGG	4 cut(s)	62, 63, 331, 456
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	6 cut(s)	193, 208, 227, 515, 589, 694
TaiI	ACGT	2 cut(s)	342, 357
TaqI	TCGA	4 cut(s)	141, 222, 327, 624
TasI	AATT	5 cut(s)	9, 31, 58, 183, 626
TatI	WGTACW	2 cut(s)	579, 835
TfiI	GAWTC	4 cut(s)	52, 109, 147, 392
Tru1I	TTAA	3 cut(s)	12, 182, 479
Tru9I	TTAA	3 cut(s)	12, 182, 479
TscAI	CASTG	1 cut(s)	500
TseFI	GTSAC	2 cut(s)	335, 413
TseI	GCWGC	1 cut(s)	779
Tsp45I	GTSAC	2 cut(s)	335, 413
TspDTI	ATGAA	7 cut(s)	149, 202, 208, 265, 619, 780, 936
TspMI	CCCGGG	1 cut(s)	63
TspRI	CASTG	1 cut(s)	500
VpaK11BI	GGWCC	1 cut(s)	863
XapI	RAATTY	2 cut(s)	58, 626
XceI	RCATGY	1 cut(s)	502
XcmI	CCANNNNNNNNNTGG	1 cut(s)	911
XmaI	CCCGGG	1 cut(s)	63
XspI	CTAG	2 cut(s)	569, 674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.