pycom01g13090

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0011310
Physical Location & Seq
Forward (+)
13659314 .. 13662563
3250 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g13090.1

Sequence Viewer

Length: 1041 bp
ATGCCTATAAATAAATTTATTAAAGAGATAGTCGATATATTATGGTACAAAATACTATTATTTTATATCTTTAACTGGATTGCACTTGTTTGTGAGAGGAGTGAATATGTAAAAAGAAATAAGCAAGTAAAAGGCTCGGACCTTCCTCAGACACAGAATTCACGGGAAAAACAAGGGAAAACTTTCCTGTTGAATCCATCTCCCCCAAAACCCACGATGAAGTTCGAAAGGTTCCTGTCAATCCCAATCTTAATGGTGTTTCTGTTAATTGGTGTTGTGTGTTACATCACGGTTTTCATCTTCATCGACGATTGGGTTGGATTGAAGAGCTCCGCTGGTTCTCTGAACGCTCTGGTTTTCATTTTCTTGGCATCTCTCTGCCTCTTCTCCTTTTTTTGCTGTGTTCTCACCGACCCAGGTCATGTTCCTGCTTCCTACGTCCCTGATGTTGAAGATAGTGCGGTCTCCGATCAAGAATCTAAGAAAAGTGGGCACTGTGACAAGTGTTCTACATACAAGCCTCCCAGGGCTCATCATTGTCGGGTCTGCCGAAGGTGTGTTTTAAGAATGGATCATCACTGCCTGTGGATCAATAACTGTGTTGGTTATTGGAACTACAAGGCATTTTTGATGCTTGTTTTATATGCAACACTAGGATGCTTGTACTCTACAATTAAGTCGATCATTATAAAGTGTGCATCTCAAAAGGACTTAGAATTCAGTGGACGTGTTAGCCACAAGGTTTTTCATGTTGTGTCTGGAATAGTGATGGCTTCCCTGAGCTTAATGCTTGGAACTCTTTTAGGTTGGCATTTCTACCTCATCACCCATAATATGACAACTATAGAGTATTATGCAGTTATAAGGGCAGCATGGTTGGCTAAGAAATCTGGGCAGAGTTACAGACATCCGTACAATCTTAGTATCTACACAAACATCACTTCGGTCTTGGGTCCAAATGTGCTGAAATGGTTATGTCCTACATCAGTAGGGCATCTAAAAGATGGACTTATCTTCCCTACTCCGCGTGATAGTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

347

Amino Acids

39.44

Weight (kDa)

9.16

Isoelectric Point (pI)

38.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 161 - 285 1.1e-35 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 689, 863
AccII CGCG 1 cut(s) 1027
AciI CCGC 3 cut(s) 333, 461, 1025
AclWI GGATC 2 cut(s) 579, 596
AcsI RAATTY 3 cut(s) 14, 157, 716
AfaI GTAC 3 cut(s) 47, 665, 914
AflIII ACRYGT 1 cut(s) 727
AgsI TTSAA 3 cut(s) 193, 325, 452
AjiI CACGTC 1 cut(s) 728
AjnI CCWGG 2 cut(s) 415, 524
AluBI AGCT 2 cut(s) 330, 783
AluI AGCT 2 cut(s) 330, 783
Alw21I GWGCWC 1 cut(s) 332
Alw26I GTCTC 1 cut(s) 469
AlwI GGATC 2 cut(s) 579, 596
ApeKI GCWGC 1 cut(s) 869
ApoI RAATTY 3 cut(s) 14, 157, 716
Asp700I GAANNNNTTC 1 cut(s) 182
AspS9I GGNCC 2 cut(s) 139, 953
AsuHPI GGTGA 2 cut(s) 400, 817
AsuII TTCGAA 1 cut(s) 225
AvaII GGWCC 2 cut(s) 139, 953
BaeGI GKGCMC 1 cut(s) 495
BanII GRGCYC 2 cut(s) 332, 532
Bbv12I GWGCWC 1 cut(s) 332
BbvI GCAGC 1 cut(s) 881
BccI CCATC 3 cut(s) 205, 763, 998
BciT130I CCWGG 2 cut(s) 417, 526
BcoDI GTCTC 1 cut(s) 469
BfaI CTAG 1 cut(s) 653
BfmI CTRYAG 1 cut(s) 843
BisI GCNGC 1 cut(s) 870
BlsI GCNGC 1 cut(s) 871
Bme1390I CCNGG 2 cut(s) 417, 526
Bme18I GGWCC 2 cut(s) 139, 953
BmgBI CACGTC 1 cut(s) 728
BmgT120I GGNCC 2 cut(s) 139, 953
BmiI GGNNCC 2 cut(s) 233, 954
BmrFI CCNGG 2 cut(s) 417, 526
BmsI GCATC 5 cut(s) 380, 621, 647, 707, 1003
BoxI GACNNNNGTC 1 cut(s) 417
Bpu10I CCTNAGC 1 cut(s) 779
Bpu14I TTCGAA 1 cut(s) 225
BsaI GGTCTC 1 cut(s) 469
BsaJI CCNNGG 3 cut(s) 415, 524, 525
Bse1I ACTGG 1 cut(s) 80
BseBI CCWGG 2 cut(s) 417, 526
BseDI CCNNGG 3 cut(s) 415, 524, 525
BseGI GGATG 2 cut(s) 662, 907
BseMII CTCAG 2 cut(s) 161, 770
BseNI ACTGG 1 cut(s) 80
BseRI GAGGAG 1 cut(s) 112
BseSI GKGCMC 1 cut(s) 495
BseXI GCAGC 1 cut(s) 881
Bsh1236I CGCG 1 cut(s) 1027
BsiHKAI GWGCWC 1 cut(s) 332
BslFI GGGAC 1 cut(s) 425
BsmAI GTCTC 1 cut(s) 469
BsmFI GGGAC 1 cut(s) 425
Bso31I GGTCTC 1 cut(s) 469
Bsp119I TTCGAA 1 cut(s) 225
Bsp1286I GDGCHC 3 cut(s) 332, 495, 532
Bsp143I GATC 4 cut(s) 469, 571, 588, 681
BspACI CCGC 3 cut(s) 333, 461, 1025
BspCNI CTCAG 2 cut(s) 160, 771
BspFNI CGCG 1 cut(s) 1027
BspHI TCATGA 1 cut(s) 1037
BspLI GGNNCC 2 cut(s) 233, 954
BspPI GGATC 2 cut(s) 579, 596
BspQI GCTCTTC 1 cut(s) 320
BspT104I TTCGAA 1 cut(s) 225
BspTNI GGTCTC 1 cut(s) 469
BsrI ACTGG 1 cut(s) 80
BssECI CCNNGG 3 cut(s) 415, 524, 525
BssMI GATC 4 cut(s) 469, 571, 588, 681
Bst2UI CCWGG 2 cut(s) 417, 526
Bst4CI ACNGT 3 cut(s) 292, 497, 599
Bst6I CTCTTC 2 cut(s) 320, 389
BstBI TTCGAA 1 cut(s) 225
BstDEI CTNAG 6 cut(s) 147, 480, 712, 779, 882, 920
BstF5I GGATG 2 cut(s) 662, 907
BstFNI CGCG 1 cut(s) 1027
BstKTI GATC 4 cut(s) 472, 574, 591, 684
BstMAI GTCTC 1 cut(s) 469
BstMBI GATC 4 cut(s) 469, 571, 588, 681
BstMWI GCNNNNNNNGC 1 cut(s) 878
BstNI CCWGG 2 cut(s) 417, 526
BstPAI GACNNNNGTC 1 cut(s) 417
BstSCI CCNGG 2 cut(s) 415, 524
BstSFI CTRYAG 1 cut(s) 843
BstSLI GKGCMC 1 cut(s) 495
BstUI CGCG 1 cut(s) 1027
BstV1I GCAGC 1 cut(s) 881
BtrI CACGTC 1 cut(s) 728
BtsCI GGATG 2 cut(s) 662, 907
BtsI GCAGTG 1 cut(s) 577
BtsIMutI CAGTG 3 cut(s) 493, 577, 727
CciI TCATGA 1 cut(s) 1037
Cfr13I GGNCC 2 cut(s) 139, 953
Csp6I GTAC 3 cut(s) 46, 664, 913
CviAII CATG 4 cut(s) 422, 749, 873, 1038
CviJI RGCY 8 cut(s) 135, 330, 520, 530, 735, 773, 783, 881
CviKI_1 RGCY 8 cut(s) 135, 330, 520, 530, 735, 773, 783, 881
CviQI GTAC 3 cut(s) 46, 664, 913
DdeI CTNAG 6 cut(s) 147, 480, 712, 779, 882, 920
DpnI GATC 4 cut(s) 471, 573, 590, 683
DpnII GATC 4 cut(s) 469, 571, 588, 681
Eam1104I CTCTTC 2 cut(s) 320, 389
EarI CTCTTC 2 cut(s) 320, 389
Ecl136II GAGCTC 1 cut(s) 330
Eco24I GRGCYC 2 cut(s) 332, 532
Eco31I GGTCTC 1 cut(s) 469
Eco47I GGWCC 2 cut(s) 139, 953
Eco53kI GAGCTC 1 cut(s) 330
EcoICRI GAGCTC 1 cut(s) 330
EcoRI GAATTC 2 cut(s) 157, 716
EcoRII CCWGG 2 cut(s) 415, 524
EcoT38I GRGCYC 2 cut(s) 332, 532
FaeI CATG 4 cut(s) 425, 752, 876, 1041
FalI AAGNNNNNCTT 2 cut(s) 993, 1025
FaqI GGGAC 1 cut(s) 425
FatI CATG 4 cut(s) 421, 748, 872, 1037
Fnu4HI GCNGC 1 cut(s) 870
FokI GGATG 2 cut(s) 669, 894
FriOI GRGCYC 2 cut(s) 332, 532
Fsp4HI GCNGC 1 cut(s) 870
FspBI CTAG 1 cut(s) 653
GluI GCNGC 1 cut(s) 870
Hin1II CATG 4 cut(s) 425, 752, 876, 1041
HinfI GANTC 2 cut(s) 193, 476
HphI GGTGA 2 cut(s) 400, 817
Hpy166II GTNNAC 1 cut(s) 725
Hpy188I TCNGA 4 cut(s) 139, 150, 345, 469
Hpy188III TCNNGA 3 cut(s) 473, 759, 1038
Hpy8I GTNNAC 1 cut(s) 725
Hpy99I CGWCG 1 cut(s) 311
HpyAV CCTTC 2 cut(s) 152, 546
HpyCH4III ACNGT 3 cut(s) 292, 497, 599
HpyCH4IV ACGT 2 cut(s) 438, 727
HpyCH4V TGCA 4 cut(s) 83, 647, 698, 857
HpyF10VI GCNNNNNNNGC 1 cut(s) 878
HpyF3I CTNAG 6 cut(s) 147, 480, 712, 779, 882, 920
HpySE526I ACGT 2 cut(s) 438, 727
Hsp92II CATG 4 cut(s) 425, 752, 876, 1041
Kzo9I GATC 4 cut(s) 469, 571, 588, 681
LguI GCTCTTC 1 cut(s) 320
LmnI GCTCC 1 cut(s) 335
Lsp1109I GCAGC 1 cut(s) 881
LweI GCATC 5 cut(s) 380, 621, 647, 707, 1003
MaeI CTAG 1 cut(s) 653
MaeII ACGT 2 cut(s) 438, 727
MaeIII GTNAC 3 cut(s) 281, 497, 899
MalI GATC 4 cut(s) 471, 573, 590, 683
MboI GATC 4 cut(s) 469, 571, 588, 681
MboII GAAGA 5 cut(s) 292, 337, 376, 464, 1006
MhlI GDGCHC 3 cut(s) 332, 495, 532
MluCI AATT 5 cut(s) 14, 157, 267, 672, 716
MmeI TCCRAC 1 cut(s) 298
MnlI CCTC 5 cut(s) 90, 156, 392, 531, 830
MroXI GAANNNNTTC 1 cut(s) 182
MseI TTAA 7 cut(s) 21, 72, 251, 266, 563, 675, 785
MslI CAYNNNNRTG 1 cut(s) 655
MspA1I CMGCKG 1 cut(s) 335
MspR9I CCNGG 2 cut(s) 417, 526
MvaI CCWGG 2 cut(s) 417, 526
MvnI CGCG 1 cut(s) 1027
MwoI GCNNNNNNNGC 1 cut(s) 878
NdeII GATC 4 cut(s) 469, 571, 588, 681
NlaIII CATG 4 cut(s) 425, 752, 876, 1041
NlaIV GGNNCC 2 cut(s) 233, 954
NmuCI GTSAC 1 cut(s) 497
NspV TTCGAA 1 cut(s) 225
PagI TCATGA 1 cut(s) 1037
PasI CCCWGGG 1 cut(s) 525
PciSI GCTCTTC 1 cut(s) 320
PcsI WCGNNNNNNNCGW 1 cut(s) 547
PdmI GAANNNNTTC 1 cut(s) 182
PfeI GAWTC 2 cut(s) 193, 476
PkrI GCNGC 1 cut(s) 871
PshAI GACNNNNGTC 1 cut(s) 417
PsiI TTATAA 2 cut(s) 689, 863
Psp124BI GAGCTC 1 cut(s) 332
Psp6I CCWGG 2 cut(s) 415, 524
PspGI CCWGG 2 cut(s) 415, 524
PspN4I GGNNCC 2 cut(s) 233, 954
PspPI GGNCC 2 cut(s) 139, 953
RsaI GTAC 3 cut(s) 47, 665, 914
RsaNI GTAC 3 cut(s) 46, 664, 913
RseI CAYNNNNRTG 1 cut(s) 655
SacI GAGCTC 1 cut(s) 332
SapI GCTCTTC 1 cut(s) 320
SaqAI TTAA 7 cut(s) 21, 72, 251, 266, 563, 675, 785
SatI GCNGC 1 cut(s) 870
Sau3AI GATC 4 cut(s) 469, 571, 588, 681
Sau96I GGNCC 2 cut(s) 139, 953
ScrFI CCNGG 2 cut(s) 417, 526
SduI GDGCHC 3 cut(s) 332, 495, 532
SfaNI GCATC 5 cut(s) 380, 621, 647, 707, 1003
SfcI CTRYAG 1 cut(s) 843
SfuI TTCGAA 1 cut(s) 225
SinI GGWCC 2 cut(s) 139, 953
SmiMI CAYNNNNRTG 1 cut(s) 655
Sse9I AATT 5 cut(s) 14, 157, 267, 672, 716
SsiI CCGC 3 cut(s) 333, 461, 1025
SspMI CTAG 1 cut(s) 653
SstI GAGCTC 1 cut(s) 332
StyD4I CCNGG 2 cut(s) 415, 524
TaaI ACNGT 3 cut(s) 292, 497, 599
TaiI ACGT 2 cut(s) 441, 730
TaqI TCGA 4 cut(s) 33, 225, 306, 680
TaqII GACCGA 1 cut(s) 934
TasI AATT 5 cut(s) 14, 157, 267, 672, 716
TatI WGTACW 1 cut(s) 663
TfiI GAWTC 2 cut(s) 193, 476
Tru1I TTAA 7 cut(s) 21, 72, 251, 266, 563, 675, 785
Tru9I TTAA 7 cut(s) 21, 72, 251, 266, 563, 675, 785
TscAI CASTG 3 cut(s) 500, 584, 727
TseFI GTSAC 1 cut(s) 497
TseI GCWGC 1 cut(s) 869
Tsp45I GTSAC 1 cut(s) 497
TspDTI ATGAA 6 cut(s) 233, 286, 292, 349, 737, 1026
TspGWI ACGGA 1 cut(s) 900
TspRI CASTG 3 cut(s) 500, 584, 727
VpaK11BI GGWCC 2 cut(s) 139, 953
XapI RAATTY 3 cut(s) 14, 157, 716
XmnI GAANNNNTTC 1 cut(s) 182
XspI CTAG 1 cut(s) 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.