Rh1BG273500

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0011310
Physical Location & Seq
Forward (+)
41015102 .. 41018324
3223 bp
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UTR
Exon/CDS
Intron
Rh1BG273500.1

Sequence Viewer

Length: 696 bp
ATGAAGTGCCAGAGATTCCTATCGATCCCAATCTTCGCTGTGCTTCTGTTGATGGGTTTCATCTGTTACATCACGGTCTTTATTTTCATCGACGATTGGGTTGGGTTGCAGAGCTCTGCTGGTTATCTGAACGTTCTGATCTTCACTGTCTTGGCCTCTCTTTGCCTCTTCTCTTTCTCTTCTTGTGTTCTCATCGACCCAGGTTACACCCCAGCTTCATATATTCCTGATGTTGAAGATAGTGGAGTCTCTGATCAGGAGCCCAAGAAAAATGTTATACAATCAAGGTGTTGTGACAAATGTTCAACATACAAGCCTCCTAGGGCTCATCATTGCCGGGTCTGCAGAAGGTGTGTTTTAAGGATGGATCATCACTGTCTGTGGGTCAATAACTGTGTCGGTTATTGGAACTACAAAGCCTTCTTTACGCTAGTCTTATATGCAACAATAGGAAGCTTGTATTCTACAACCATCATTATAACTTGTGCTTTGCAAAAGGACTGGGAATTCAGTGGAAGTGGGAGCCTCAAAGTCTTTTATGTTACATGTGCAGCAACGATGGCTGCCTTGACCTTAACGCTTGGAACTCTTCTAGGATGGCATGTTTACCTCATCATCCGTAATATGACAACTATAGAGGTAAACTGTGACATTTTGAAAATGGAAGTAGAACTATTATTTTGGAGTAGTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

231

Amino Acids

26.2

Weight (kDa)

7.43

Isoelectric Point (pI)

34.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 94 - 213 5e-34 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 479
AclI AACGTT 1 cut(s) 132
AclWI GGATC 2 cut(s) 19, 375
AcsI RAATTY 1 cut(s) 506
AflIII ACRYGT 1 cut(s) 545
AgsI TTSAA 3 cut(s) 236, 306, 658
AjnI CCWGG 1 cut(s) 199
AluBI AGCT 3 cut(s) 114, 215, 456
AluI AGCT 3 cut(s) 114, 215, 456
Alw21I GWGCWC 1 cut(s) 116
Alw26I GTCTC 1 cut(s) 253
AlwI GGATC 2 cut(s) 19, 375
AoxI GGCC 1 cut(s) 153
ApeKI GCWGC 2 cut(s) 551, 563
ApoI RAATTY 1 cut(s) 506
AspA2I CCTAGG 1 cut(s) 320
AsuC2I CCSGG 1 cut(s) 338
AvrII CCTAGG 1 cut(s) 320
BanII GRGCYC 3 cut(s) 116, 264, 328
Bbv12I GWGCWC 1 cut(s) 116
BbvI GCAGC 2 cut(s) 550, 563
BccI CCATC 5 cut(s) 46, 358, 479, 553, 591
BciT130I CCWGG 1 cut(s) 201
BclI TGATCA 1 cut(s) 253
BcnI CCSGG 1 cut(s) 338
BcoDI GTCTC 1 cut(s) 253
BfaI CTAG 3 cut(s) 321, 431, 593
BfmI CTRYAG 2 cut(s) 343, 633
BisI GCNGC 2 cut(s) 552, 564
BlnI CCTAGG 1 cut(s) 320
BlsI GCNGC 2 cut(s) 553, 565
Bme1390I CCNGG 2 cut(s) 201, 338
BmiI GGNNCC 2 cut(s) 261, 524
BmrFI CCNGG 2 cut(s) 201, 338
BmrI ACTGGG 1 cut(s) 511
BmuI ACTGGG 1 cut(s) 511
BpuMI CCSGG 1 cut(s) 338
Bsa29I ATCGAT 1 cut(s) 23
BsaBI GATNNNNATC 2 cut(s) 19, 29
BsaJI CCNNGG 2 cut(s) 199, 320
Bse1I ACTGG 1 cut(s) 506
Bse3DI GCAATG 1 cut(s) 331
Bse8I GATNNNNATC 2 cut(s) 19, 29
BseBI CCWGG 1 cut(s) 201
BseCI ATCGAT 1 cut(s) 23
BseDI CCNNGG 2 cut(s) 199, 320
BseGI GGATG 3 cut(s) 369, 602, 615
BseJI GATNNNNATC 2 cut(s) 19, 29
BseMI GCAATG 1 cut(s) 331
BseNI ACTGG 1 cut(s) 506
BseXI GCAGC 2 cut(s) 550, 563
BseYI CCCAGC 1 cut(s) 211
BsgI GTGCAG 1 cut(s) 570
BshFI GGCC 1 cut(s) 155
BshVI ATCGAT 1 cut(s) 23
BsiHKAI GWGCWC 1 cut(s) 116
BsiSI CCGG 1 cut(s) 337
BsmAI GTCTC 1 cut(s) 253
BsnI GGCC 1 cut(s) 155
Bsp1286I GDGCHC 3 cut(s) 116, 264, 328
Bsp143I GATC 4 cut(s) 24, 138, 253, 367
BspANI GGCC 1 cut(s) 155
BspDI ATCGAT 1 cut(s) 23
BspLI GGNNCC 2 cut(s) 261, 524
BspMAI CTGCAG 1 cut(s) 347
BspPI GGATC 2 cut(s) 19, 375
BsrDI GCAATG 1 cut(s) 331
BsrI ACTGG 1 cut(s) 506
BssECI CCNNGG 2 cut(s) 199, 320
BssMI GATC 4 cut(s) 24, 138, 253, 367
BssT1I CCWWGG 1 cut(s) 320
Bst2UI CCWGG 1 cut(s) 201
Bst4CI ACNGT 5 cut(s) 76, 148, 377, 395, 647
Bst6I CTCTTC 3 cut(s) 173, 184, 594
BstF5I GGATG 3 cut(s) 369, 602, 615
BstKTI GATC 4 cut(s) 27, 141, 256, 370
BstMAI GTCTC 1 cut(s) 253
BstMBI GATC 4 cut(s) 24, 138, 253, 367
BstMWI GCNNNNNNNGC 2 cut(s) 342, 560
BstNI CCWGG 1 cut(s) 201
BstNSI RCATGY 2 cut(s) 549, 605
BstSCI CCNGG 2 cut(s) 199, 336
BstSFI CTRYAG 2 cut(s) 343, 633
BstV1I GCAGC 2 cut(s) 550, 563
Bsu15I ATCGAT 1 cut(s) 23
BsuRI GGCC 1 cut(s) 155
BsuTUI ATCGAT 1 cut(s) 23
BtsCI GGATG 3 cut(s) 369, 602, 615
BtsIMutI CAGTG 3 cut(s) 144, 373, 517
ClaI ATCGAT 1 cut(s) 23
CviAII CATG 2 cut(s) 546, 602
DpnI GATC 4 cut(s) 26, 140, 255, 369
DpnII GATC 4 cut(s) 24, 138, 253, 367
Eam1104I CTCTTC 3 cut(s) 173, 184, 594
EarI CTCTTC 3 cut(s) 173, 184, 594
Ecl136II GAGCTC 1 cut(s) 114
Eco130I CCWWGG 1 cut(s) 320
Eco24I GRGCYC 3 cut(s) 116, 264, 328
Eco53kI GAGCTC 1 cut(s) 114
EcoICRI GAGCTC 1 cut(s) 114
EcoRI GAATTC 1 cut(s) 506
EcoRII CCWGG 1 cut(s) 199
EcoT14I CCWWGG 1 cut(s) 320
EcoT38I GRGCYC 3 cut(s) 116, 264, 328
ErhI CCWWGG 1 cut(s) 320
FaeI CATG 2 cut(s) 549, 605
FatI CATG 2 cut(s) 545, 601
FbaI TGATCA 1 cut(s) 253
Fnu4HI GCNGC 2 cut(s) 552, 564
FokI GGATG 3 cut(s) 376, 602, 609
FriOI GRGCYC 3 cut(s) 116, 264, 328
Fsp4HI GCNGC 2 cut(s) 552, 564
FspBI CTAG 3 cut(s) 321, 431, 593
GluI GCNGC 2 cut(s) 552, 564
GsaI CCCAGC 1 cut(s) 215
HaeIII GGCC 1 cut(s) 155
HapII CCGG 1 cut(s) 337
Hin1II CATG 2 cut(s) 549, 605
HindIII AAGCTT 1 cut(s) 454
HinfI GANTC 2 cut(s) 15, 246
HpaII CCGG 1 cut(s) 337
Hpy166II GTNNAC 2 cut(s) 607, 643
Hpy188I TCNGA 3 cut(s) 129, 138, 253
Hpy188III TCNNGA 2 cut(s) 227, 257
Hpy8I GTNNAC 2 cut(s) 607, 643
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 2 cut(s) 342, 430
HpyCH4III ACNGT 5 cut(s) 76, 148, 377, 395, 647
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 5 cut(s) 109, 345, 443, 493, 551
HpyF10VI GCNNNNNNNGC 2 cut(s) 342, 560
HpySE526I ACGT 1 cut(s) 132
Hsp92II CATG 2 cut(s) 549, 605
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 4 cut(s) 24, 138, 253, 367
LmnI GCTCC 2 cut(s) 259, 522
LpnPI CCDG 9 cut(s) 23, 105, 186, 213, 225, 240, 242, 350, 487
Lsp1109I GCAGC 2 cut(s) 550, 563
MaeI CTAG 3 cut(s) 321, 431, 593
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 5 cut(s) 65, 203, 293, 541, 647
MalI GATC 4 cut(s) 26, 140, 255, 369
MboI GATC 4 cut(s) 24, 138, 253, 367
MboII GAAGA 6 cut(s) 25, 133, 160, 171, 248, 581
MhlI GDGCHC 3 cut(s) 116, 264, 328
MluCI AATT 1 cut(s) 506
MlyI GAGTC 1 cut(s) 255
MnlI CCTC 6 cut(s) 166, 176, 327, 536, 620, 631
MseI TTAA 2 cut(s) 359, 575
MspI CCGG 1 cut(s) 337
MspR9I CCNGG 2 cut(s) 201, 338
MvaI CCWGG 1 cut(s) 201
MwoI GCNNNNNNNGC 2 cut(s) 342, 560
NciI CCSGG 1 cut(s) 338
NdeII GATC 4 cut(s) 24, 138, 253, 367
NlaIII CATG 2 cut(s) 549, 605
NlaIV GGNNCC 2 cut(s) 261, 524
NmuCI GTSAC 2 cut(s) 293, 647
NspI RCATGY 2 cut(s) 549, 605
PciI ACATGT 1 cut(s) 545
PfeI GAWTC 1 cut(s) 15
PkrI GCNGC 2 cut(s) 553, 565
PleI GAGTC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 254
PscI ACATGT 1 cut(s) 545
PsiI TTATAA 1 cut(s) 479
Psp124BI GAGCTC 1 cut(s) 116
Psp1406I AACGTT 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 199
PspFI CCCAGC 1 cut(s) 211
PspGI CCWGG 1 cut(s) 199
PspN4I GGNNCC 2 cut(s) 261, 524
PstI CTGCAG 1 cut(s) 347
SacI GAGCTC 1 cut(s) 116
SaqAI TTAA 2 cut(s) 359, 575
SatI GCNGC 2 cut(s) 552, 564
Sau3AI GATC 4 cut(s) 24, 138, 253, 367
SchI GAGTC 1 cut(s) 255
ScrFI CCNGG 2 cut(s) 201, 338
SduI GDGCHC 3 cut(s) 116, 264, 328
SfcI CTRYAG 2 cut(s) 343, 633
Sse9I AATT 1 cut(s) 506
SspMI CTAG 3 cut(s) 321, 431, 593
SstI GAGCTC 1 cut(s) 116
StyD4I CCNGG 2 cut(s) 199, 336
StyI CCWWGG 1 cut(s) 320
TaaI ACNGT 5 cut(s) 76, 148, 377, 395, 647
TaiI ACGT 1 cut(s) 135
TaqI TCGA 3 cut(s) 23, 90, 195
TasI AATT 1 cut(s) 506
TfiI GAWTC 1 cut(s) 15
Tru1I TTAA 2 cut(s) 359, 575
Tru9I TTAA 2 cut(s) 359, 575
TscAI CASTG 3 cut(s) 151, 380, 517
TseFI GTSAC 2 cut(s) 293, 647
TseI GCWGC 2 cut(s) 551, 563
Tsp45I GTSAC 2 cut(s) 293, 647
TspDTI ATGAA 4 cut(s) 17, 49, 76, 207
TspGWI ACGGA 1 cut(s) 608
TspRI CASTG 3 cut(s) 151, 380, 517
XapI RAATTY 1 cut(s) 506
XceI RCATGY 2 cut(s) 549, 605
XmaJI CCTAGG 1 cut(s) 320
XspI CTAG 3 cut(s) 321, 431, 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.