MD01G1104200.v1.1

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0011310
Physical Location & Seq
Forward (+)
21728662 .. 21732134
3473 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1104200.v1.1.491

Sequence Viewer

Length: 819 bp
ATGAAGTTCAAAAGGTTCCTGTCAATCCCAATCTTAATGGTGTTTCTGTTAATTGGTGTTGTGTGTTACATCACGGTTTTCATCTTCATCGACGATTGGGTAGGATTGAAGAGCTACGCTGGTTCTCTGAACGCTCTGGTTTTCATTTTCTTGGCATCTCTCTGCCTCTTCTCCTTTTTTTGCTGTGTTCTCACCAACCCAGGTCATGTTCCTGCTTCCTACGTCCCTGATGTTGAAGATAGTGCGGTCTCCGATCAAGAATCTAAGAAAAATGGGCGCTGTGACAAGTGTTCTACATTCAAGCCTCCCAGGGCTCATCATTGTCGGGTTTGCCGTAGGTGTGTTTTAAGAATGGATCATCACTGCCTGTGGATCAATAACTGTGTTGGTTACTGGAACTACAAGGCATTTTTTATGCTTGTTTTTTATGCAACACTAGGATGCTTGTACTCTACAGTGATCATTATAAAGTGTGGATCTCAAAAGGACTTAGAATTCAGTGGAAGTGTTAGTCACAAGGTTTTTTATGTTGTGTCTGGACTAGTGATGGCTTCCTTGAGCTTAATGCTTGGAACTCTTTTAGGTTGGCATTTCTACCTCATCACCCAGAATATGACAACTATAGAGTATTATGAAGGAATACGGGCAGCATGGTTGGTTAAGAAATCTGGGCAGAGTTACAGACATCCGTACAATCTTAGTATCTACACAAACATCACTTCGGTCTTGGGTCCAAATGTGCTGAAATGGTTATGTCCTACATCAGTAGGGCATCTAAAAGATGGACTTATCTTCCCTACTCCGCGTGATAGTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

273

Amino Acids

30.82

Weight (kDa)

8.95

Isoelectric Point (pI)

31.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 90 - 212 1.8e-35 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 467
AccII CGCG 1 cut(s) 805
AciI CCGC 2 cut(s) 245, 803
AclWI GGATC 3 cut(s) 363, 380, 484
AcsI RAATTY 1 cut(s) 494
AfaI GTAC 2 cut(s) 449, 692
AgsI TTSAA 4 cut(s) 10, 109, 236, 301
AhlI ACTAGT 1 cut(s) 541
AjnI CCWGG 2 cut(s) 199, 308
AluBI AGCT 2 cut(s) 114, 561
AluI AGCT 2 cut(s) 114, 561
Alw26I GTCTC 1 cut(s) 253
AlwI GGATC 3 cut(s) 363, 380, 484
ApeKI GCWGC 1 cut(s) 647
ApoI RAATTY 1 cut(s) 494
AspLEI GCGC 1 cut(s) 279
AspS9I GGNCC 1 cut(s) 731
AsuHPI GGTGA 2 cut(s) 184, 595
AvaII GGWCC 1 cut(s) 731
BanII GRGCYC 1 cut(s) 316
BbvI GCAGC 1 cut(s) 659
BccI CCATC 2 cut(s) 541, 776
BceAI ACGGC 1 cut(s) 318
BciT130I CCWGG 2 cut(s) 201, 310
BclI TGATCA 1 cut(s) 459
BcoDI GTCTC 1 cut(s) 253
BcuI ACTAGT 1 cut(s) 541
BfaI CTAG 2 cut(s) 437, 542
BfmI CTRYAG 2 cut(s) 453, 621
BfoI RGCGCY 1 cut(s) 280
BisI GCNGC 1 cut(s) 648
BlsI GCNGC 1 cut(s) 649
Bme1390I CCNGG 2 cut(s) 201, 310
Bme18I GGWCC 1 cut(s) 731
BmgT120I GGNCC 1 cut(s) 731
BmiI GGNNCC 2 cut(s) 17, 732
BmrFI CCNGG 2 cut(s) 201, 310
BmsI GCATC 3 cut(s) 164, 431, 781
BpuEI CTTGAG 1 cut(s) 577
BsaI GGTCTC 1 cut(s) 253
BsaJI CCNNGG 3 cut(s) 199, 308, 309
Bse1I ACTGG 1 cut(s) 398
BseBI CCWGG 2 cut(s) 201, 310
BseDI CCNNGG 3 cut(s) 199, 308, 309
BseGI GGATG 2 cut(s) 446, 685
BseNI ACTGG 1 cut(s) 398
BseXI GCAGC 1 cut(s) 659
Bsh1236I CGCG 1 cut(s) 805
BslFI GGGAC 1 cut(s) 209
BsmAI GTCTC 1 cut(s) 253
BsmFI GGGAC 1 cut(s) 209
Bso31I GGTCTC 1 cut(s) 253
Bsp1286I GDGCHC 1 cut(s) 316
Bsp143I GATC 5 cut(s) 253, 355, 372, 459, 476
BspACI CCGC 2 cut(s) 245, 803
BspFNI CGCG 1 cut(s) 805
BspHI TCATGA 1 cut(s) 815
BspLI GGNNCC 2 cut(s) 17, 732
BspPI GGATC 3 cut(s) 363, 380, 484
BspQI GCTCTTC 1 cut(s) 104
BspTNI GGTCTC 1 cut(s) 253
BsrI ACTGG 1 cut(s) 398
BssECI CCNNGG 3 cut(s) 199, 308, 309
BssMI GATC 5 cut(s) 253, 355, 372, 459, 476
Bst2UI CCWGG 2 cut(s) 201, 310
Bst4CI ACNGT 3 cut(s) 76, 383, 457
Bst6I CTCTTC 2 cut(s) 104, 173
BstDEI CTNAG 3 cut(s) 264, 490, 698
BstF5I GGATG 2 cut(s) 446, 685
BstFNI CGCG 1 cut(s) 805
BstH2I RGCGCY 1 cut(s) 280
BstHHI GCGC 1 cut(s) 279
BstKTI GATC 5 cut(s) 256, 358, 375, 462, 479
BstMAI GTCTC 1 cut(s) 253
BstMBI GATC 5 cut(s) 253, 355, 372, 459, 476
BstNI CCWGG 2 cut(s) 201, 310
BstSCI CCNGG 2 cut(s) 199, 308
BstSFI CTRYAG 2 cut(s) 453, 621
BstUI CGCG 1 cut(s) 805
BstV1I GCAGC 1 cut(s) 659
BstX2I RGATCY 1 cut(s) 476
BstYI RGATCY 1 cut(s) 476
BtsCI GGATG 2 cut(s) 446, 685
BtsI GCAGTG 1 cut(s) 361
BtsIMutI CAGTG 3 cut(s) 361, 462, 505
CciI TCATGA 1 cut(s) 815
CfoI GCGC 1 cut(s) 279
Cfr13I GGNCC 1 cut(s) 731
Csp6I GTAC 2 cut(s) 448, 691
CviAII CATG 3 cut(s) 206, 651, 816
CviJI RGCY 5 cut(s) 114, 304, 314, 551, 561
CviKI_1 RGCY 5 cut(s) 114, 304, 314, 551, 561
CviQI GTAC 2 cut(s) 448, 691
DdeI CTNAG 3 cut(s) 264, 490, 698
DpnI GATC 5 cut(s) 255, 357, 374, 461, 478
DpnII GATC 5 cut(s) 253, 355, 372, 459, 476
Eam1104I CTCTTC 2 cut(s) 104, 173
EarI CTCTTC 2 cut(s) 104, 173
Eco24I GRGCYC 1 cut(s) 316
Eco31I GGTCTC 1 cut(s) 253
Eco47I GGWCC 1 cut(s) 731
EcoRI GAATTC 1 cut(s) 494
EcoRII CCWGG 2 cut(s) 199, 308
EcoT38I GRGCYC 1 cut(s) 316
FaeI CATG 3 cut(s) 209, 654, 819
FalI AAGNNNNNCTT 2 cut(s) 771, 803
FaqI GGGAC 1 cut(s) 209
FatI CATG 3 cut(s) 205, 650, 815
FbaI TGATCA 1 cut(s) 459
Fnu4HI GCNGC 1 cut(s) 648
FokI GGATG 2 cut(s) 453, 672
FriOI GRGCYC 1 cut(s) 316
Fsp4HI GCNGC 1 cut(s) 648
FspBI CTAG 2 cut(s) 437, 542
GlaI GCGC 1 cut(s) 278
GluI GCNGC 1 cut(s) 648
HaeII RGCGCY 1 cut(s) 280
HhaI GCGC 1 cut(s) 279
Hin1II CATG 3 cut(s) 209, 654, 819
Hin6I GCGC 1 cut(s) 277
HinP1I GCGC 1 cut(s) 277
HinfI GANTC 1 cut(s) 260
HphI GGTGA 2 cut(s) 184, 595
Hpy188I TCNGA 2 cut(s) 129, 253
Hpy188III TCNNGA 3 cut(s) 257, 537, 816
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 1 cut(s) 629
HpyCH4III ACNGT 3 cut(s) 76, 383, 457
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 1 cut(s) 431
HpyF3I CTNAG 3 cut(s) 264, 490, 698
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 3 cut(s) 209, 654, 819
HspAI GCGC 1 cut(s) 277
Ksp22I TGATCA 1 cut(s) 459
Kzo9I GATC 5 cut(s) 253, 355, 372, 459, 476
LguI GCTCTTC 1 cut(s) 104
Lsp1109I GCAGC 1 cut(s) 659
LweI GCATC 3 cut(s) 164, 431, 781
MaeI CTAG 2 cut(s) 437, 542
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 5 cut(s) 65, 281, 389, 512, 677
MalI GATC 5 cut(s) 255, 357, 374, 461, 478
MboI GATC 5 cut(s) 253, 355, 372, 459, 476
MboII GAAGA 5 cut(s) 76, 121, 160, 248, 784
MflI RGATCY 1 cut(s) 476
MhlI GDGCHC 1 cut(s) 316
MluCI AATT 2 cut(s) 51, 494
MnlI CCTC 3 cut(s) 176, 315, 608
MseI TTAA 5 cut(s) 35, 50, 347, 563, 660
MslI CAYNNNNRTG 1 cut(s) 439
MspR9I CCNGG 2 cut(s) 201, 310
MvaI CCWGG 2 cut(s) 201, 310
MvnI CGCG 1 cut(s) 805
NdeII GATC 5 cut(s) 253, 355, 372, 459, 476
NlaIII CATG 3 cut(s) 209, 654, 819
NlaIV GGNNCC 2 cut(s) 17, 732
NmuCI GTSAC 2 cut(s) 281, 512
PagI TCATGA 1 cut(s) 815
PasI CCCWGGG 1 cut(s) 309
PciSI GCTCTTC 1 cut(s) 104
PcsI WCGNNNNNNNCGW 1 cut(s) 331
PfeI GAWTC 1 cut(s) 260
PkrI GCNGC 1 cut(s) 649
PsiI TTATAA 1 cut(s) 467
Psp6I CCWGG 2 cut(s) 199, 308
PspGI CCWGG 2 cut(s) 199, 308
PspN4I GGNNCC 2 cut(s) 17, 732
PspPI GGNCC 1 cut(s) 731
PsuI RGATCY 1 cut(s) 476
RsaI GTAC 2 cut(s) 449, 692
RsaNI GTAC 2 cut(s) 448, 691
RseI CAYNNNNRTG 1 cut(s) 439
SapI GCTCTTC 1 cut(s) 104
SaqAI TTAA 5 cut(s) 35, 50, 347, 563, 660
SatI GCNGC 1 cut(s) 648
Sau3AI GATC 5 cut(s) 253, 355, 372, 459, 476
Sau96I GGNCC 1 cut(s) 731
ScrFI CCNGG 2 cut(s) 201, 310
SduI GDGCHC 1 cut(s) 316
SetI ASST 9 cut(s) 17, 116, 205, 225, 341, 522, 563, 586, 600
SfaNI GCATC 3 cut(s) 164, 431, 781
SfcI CTRYAG 2 cut(s) 453, 621
SinI GGWCC 1 cut(s) 731
SmiMI CAYNNNNRTG 1 cut(s) 439
SmlI CTYRAG 1 cut(s) 556
SmoI CTYRAG 1 cut(s) 556
SpeI ACTAGT 1 cut(s) 541
Sse9I AATT 2 cut(s) 51, 494
SsiI CCGC 2 cut(s) 245, 803
SspMI CTAG 2 cut(s) 437, 542
StyD4I CCNGG 2 cut(s) 199, 308
TaaI ACNGT 3 cut(s) 76, 383, 457
TaiI ACGT 1 cut(s) 225
TaqI TCGA 1 cut(s) 90
TaqII GACCGA 1 cut(s) 712
TasI AATT 2 cut(s) 51, 494
TatI WGTACW 1 cut(s) 447
TfiI GAWTC 1 cut(s) 260
Tru1I TTAA 5 cut(s) 35, 50, 347, 563, 660
Tru9I TTAA 5 cut(s) 35, 50, 347, 563, 660
TscAI CASTG 3 cut(s) 368, 462, 505
TseFI GTSAC 2 cut(s) 281, 512
TseI GCWGC 1 cut(s) 647
Tsp45I GTSAC 2 cut(s) 281, 512
TspDTI ATGAA 6 cut(s) 17, 70, 76, 133, 648, 804
TspGWI ACGGA 1 cut(s) 678
TspRI CASTG 3 cut(s) 368, 462, 505
VpaK11BI GGWCC 1 cut(s) 731
XapI RAATTY 1 cut(s) 494
XspI CTAG 2 cut(s) 437, 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.