Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0011310

Physical Location & Seq

Genomic Coordinates Forward (+)

56409570 .. 56413127

Gene Structure 3558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG290600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGTTCAGTTTTCTCAAACCCACGATGAAGTGCCAGAGATTCCTATCGATCCCAATCATCGCTGTGCTTCTGTTGATGGGTTTCATCTGTTACATCACGGTCTTTATTTTCATCGACGATTGGGTTGGGTTGCAGAGCTCTGCTGGTTATCTGAACGTTCTGATCTTCACTGTCTTGGCCTCTCTTTGCCTCTTCTCTTTCTCTTCTTGTGTTCTCATCGACCCAGGTCACACCCCAGCTTCATATATCCCTGATGTTGAAGATAGTGGAGTCTCTGATCAGGAGCCCAAGAAAAATGTTATACAATCAAGGTGTTGTGACAAGTGTTCAACATACAAGCCTCCTAGGGCTCATCATTGCCGGGTCTGCAGAAGGTGTGTTTTAAGGATGGTAGGTTGGATTGTTTTCCTTGTCATCGTACTCACCATTCTTAGTTTTGCACATGGATTTTCTTTTTGGTTCACTTTTGCCTGTGAAAATTGGGTGCAGGATCATCACTGTCTGTGGGTCAATAACTGTGTTGGTTATTGGAACTACAAAGCCTTCTTTACGCTAGTCTTATATGCAACAATAGGAAGCTTGTATTCTACAACCATCATTATAACTTGTGCTTTGCAAAAGGACTGGGAATTCAGTGGAAGTGGGAGCCTCAAAGTCTTTTATGTTACATGTGCAGCAACGATGGCTGCCTTGACCTTAACGCTTGGAACTCTTCTAGGATGGCATGTTTACCTCATCATCCGTAATATGACAACTATAGAGGTAAACTGTGACATTTTGAAAATGGAAGTAGAACTATTATTTTGGAGTAGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHHC

Protein Analysis

272

Amino Acids

30.96

Weight (kDa)

7.45

Isoelectric Point (pI)

32.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHHC	PF01529	102 - 130	1.7e-06	DHHC palmitoyltransferase
DHHC	PF01529	163 - 254	2.8e-17	DHHC palmitoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04270
fragaria_vesca	FvH4_7g18860
malus_domestica	MD01G1104200.v1.1 MD07G1171000.v1.1
prunus_persica	Prupe.2G209800_v2.0.a1 Prupe.2G209800_v2.0.a1 Prupe.2G209800_v2.0.a1
pyrus_communis	pycom01g13090 pycom07g16470
rosa_chinensis	RchiOBHm_Chr1g0362791
rosa_laevigata	RLG00000027621
rosa_multiflora	Rmu_co8462993.1_g000001 Rmu_sc0000046.1_g000004
rosa_roxburghii	Rroxscaffold_4G00293760
rosa_rugosa	Rorug01G0301300
rosa_samantha	Rh1AG310100 Rh1BG273500 Rh1CG290600 Rh1DG304200
rosa_wichuraiana	Rw1G027510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	602
AclI	AACGTT	1 cut(s)	156
AclWI	GGATC	2 cut(s)	43, 498
AcsI	RAATTY	1 cut(s)	629
AfaI	GTAC	1 cut(s)	420
AflIII	ACRYGT	1 cut(s)	668
AgsI	TTSAA	3 cut(s)	260, 330, 781
AjnI	CCWGG	1 cut(s)	223
AluBI	AGCT	3 cut(s)	138, 239, 579
AluI	AGCT	3 cut(s)	138, 239, 579
Alw21I	GWGCWC	1 cut(s)	140
Alw26I	GTCTC	1 cut(s)	277
AlwI	GGATC	2 cut(s)	43, 498
AoxI	GGCC	1 cut(s)	177
ApeKI	GCWGC	2 cut(s)	674, 686
ApoI	RAATTY	1 cut(s)	629
AspA2I	CCTAGG	1 cut(s)	344
AsuC2I	CCSGG	1 cut(s)	362
AsuHPI	GGTGA	1 cut(s)	415
AvrII	CCTAGG	1 cut(s)	344
BanII	GRGCYC	3 cut(s)	140, 288, 352
Bbv12I	GWGCWC	1 cut(s)	140
BbvI	GCAGC	2 cut(s)	673, 686
BccI	CCATC	5 cut(s)	70, 382, 602, 676, 714
BciT130I	CCWGG	1 cut(s)	225
BclI	TGATCA	1 cut(s)	277
BcnI	CCSGG	1 cut(s)	362
BcoDI	GTCTC	1 cut(s)	277
BfaI	CTAG	3 cut(s)	345, 554, 716
BfmI	CTRYAG	2 cut(s)	367, 756
BisI	GCNGC	2 cut(s)	675, 687
BlnI	CCTAGG	1 cut(s)	344
BlsI	GCNGC	2 cut(s)	676, 688
Bme1390I	CCNGG	2 cut(s)	225, 362
BmiI	GGNNCC	2 cut(s)	285, 647
BmrFI	CCNGG	2 cut(s)	225, 362
BmrI	ACTGGG	1 cut(s)	634
BmuI	ACTGGG	1 cut(s)	634
BoxI	GACNNNNGTC	1 cut(s)	225
BpuMI	CCSGG	1 cut(s)	362
Bsa29I	ATCGAT	1 cut(s)	47
BsaBI	GATNNNNATC	2 cut(s)	43, 53
BsaJI	CCNNGG	2 cut(s)	223, 344
Bse1I	ACTGG	1 cut(s)	629
Bse3DI	GCAATG	1 cut(s)	355
Bse8I	GATNNNNATC	2 cut(s)	43, 53
BseBI	CCWGG	1 cut(s)	225
BseCI	ATCGAT	1 cut(s)	47
BseDI	CCNNGG	2 cut(s)	223, 344
BseGI	GGATG	3 cut(s)	393, 725, 738
BseJI	GATNNNNATC	2 cut(s)	43, 53
BseMI	GCAATG	1 cut(s)	355
BseNI	ACTGG	1 cut(s)	629
BseXI	GCAGC	2 cut(s)	673, 686
BseYI	CCCAGC	1 cut(s)	235
BsgI	GTGCAG	2 cut(s)	506, 693
BshFI	GGCC	1 cut(s)	179
BshVI	ATCGAT	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	361
BsmAI	GTCTC	1 cut(s)	277
BsnI	GGCC	1 cut(s)	179
Bsp1286I	GDGCHC	3 cut(s)	140, 288, 352
Bsp143I	GATC	4 cut(s)	48, 162, 277, 490
BspANI	GGCC	1 cut(s)	179
BspDI	ATCGAT	1 cut(s)	47
BspLI	GGNNCC	2 cut(s)	285, 647
BspMAI	CTGCAG	1 cut(s)	371
BspPI	GGATC	2 cut(s)	43, 498
BsrDI	GCAATG	1 cut(s)	355
BsrI	ACTGG	1 cut(s)	629
BssECI	CCNNGG	2 cut(s)	223, 344
BssMI	GATC	4 cut(s)	48, 162, 277, 490
BssT1I	CCWWGG	1 cut(s)	344
Bst2UI	CCWGG	1 cut(s)	225
Bst4CI	ACNGT	5 cut(s)	100, 172, 500, 518, 770
Bst6I	CTCTTC	3 cut(s)	197, 208, 717
BstDEI	CTNAG	1 cut(s)	431
BstF5I	GGATG	3 cut(s)	393, 725, 738
BstKTI	GATC	4 cut(s)	51, 165, 280, 493
BstMAI	GTCTC	1 cut(s)	277
BstMBI	GATC	4 cut(s)	48, 162, 277, 490
BstMWI	GCNNNNNNNGC	2 cut(s)	366, 683
BstNI	CCWGG	1 cut(s)	225
BstNSI	RCATGY	2 cut(s)	672, 728
BstPAI	GACNNNNGTC	1 cut(s)	225
BstSCI	CCNGG	2 cut(s)	223, 360
BstSFI	CTRYAG	2 cut(s)	367, 756
BstV1I	GCAGC	2 cut(s)	673, 686
Bsu15I	ATCGAT	1 cut(s)	47
BsuRI	GGCC	1 cut(s)	179
BsuTUI	ATCGAT	1 cut(s)	47
BtgZI	GCGATG	1 cut(s)	43
BtsCI	GGATG	3 cut(s)	393, 725, 738
BtsIMutI	CAGTG	3 cut(s)	168, 496, 640
ClaI	ATCGAT	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	419
CviAII	CATG	3 cut(s)	443, 669, 725
CviQI	GTAC	1 cut(s)	419
DdeI	CTNAG	1 cut(s)	431
DpnI	GATC	4 cut(s)	50, 164, 279, 492
DpnII	GATC	4 cut(s)	48, 162, 277, 490
Eam1104I	CTCTTC	3 cut(s)	197, 208, 717
EarI	CTCTTC	3 cut(s)	197, 208, 717
Ecl136II	GAGCTC	1 cut(s)	138
Eco130I	CCWWGG	1 cut(s)	344
Eco24I	GRGCYC	3 cut(s)	140, 288, 352
Eco53kI	GAGCTC	1 cut(s)	138
EcoICRI	GAGCTC	1 cut(s)	138
EcoRI	GAATTC	1 cut(s)	629
EcoRII	CCWGG	1 cut(s)	223
EcoT14I	CCWWGG	1 cut(s)	344
EcoT38I	GRGCYC	3 cut(s)	140, 288, 352
ErhI	CCWWGG	1 cut(s)	344
FaeI	CATG	3 cut(s)	446, 672, 728
FatI	CATG	3 cut(s)	442, 668, 724
FbaI	TGATCA	1 cut(s)	277
Fnu4HI	GCNGC	2 cut(s)	675, 687
FokI	GGATG	3 cut(s)	400, 725, 732
FriOI	GRGCYC	3 cut(s)	140, 288, 352
Fsp4HI	GCNGC	2 cut(s)	675, 687
FspBI	CTAG	3 cut(s)	345, 554, 716
GluI	GCNGC	2 cut(s)	675, 687
GsaI	CCCAGC	1 cut(s)	239
HaeIII	GGCC	1 cut(s)	179
HapII	CCGG	1 cut(s)	361
Hin1II	CATG	3 cut(s)	446, 672, 728
HindIII	AAGCTT	1 cut(s)	577
HinfI	GANTC	2 cut(s)	39, 270
HpaII	CCGG	1 cut(s)	361
HphI	GGTGA	1 cut(s)	415
Hpy166II	GTNNAC	3 cut(s)	462, 730, 766
Hpy188I	TCNGA	3 cut(s)	153, 162, 277
Hpy188III	TCNNGA	1 cut(s)	281
Hpy8I	GTNNAC	3 cut(s)	462, 730, 766
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	2 cut(s)	366, 553
HpyCH4III	ACNGT	5 cut(s)	100, 172, 500, 518, 770
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	7 cut(s)	133, 369, 440, 487, 566, 616, 674
HpyF10VI	GCNNNNNNNGC	2 cut(s)	366, 683
HpyF3I	CTNAG	1 cut(s)	431
HpySE526I	ACGT	1 cut(s)	156
Hsp92II	CATG	3 cut(s)	446, 672, 728
Ksp22I	TGATCA	1 cut(s)	277
Kzo9I	GATC	4 cut(s)	48, 162, 277, 490
LmnI	GCTCC	2 cut(s)	283, 645
Lsp1109I	GCAGC	2 cut(s)	673, 686
MaeI	CTAG	3 cut(s)	345, 554, 716
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	5 cut(s)	89, 227, 317, 664, 770
MalI	GATC	4 cut(s)	50, 164, 279, 492
MboI	GATC	4 cut(s)	48, 162, 277, 490
MboII	GAAGA	5 cut(s)	157, 184, 195, 272, 704
MhlI	GDGCHC	3 cut(s)	140, 288, 352
MluCI	AATT	2 cut(s)	478, 629
MlyI	GAGTC	1 cut(s)	279
MmeI	TCCRAC	1 cut(s)	377
MnlI	CCTC	6 cut(s)	190, 200, 351, 659, 743, 754
MseI	TTAA	2 cut(s)	383, 698
MslI	CAYNNNNRTG	1 cut(s)	62
MspI	CCGG	1 cut(s)	361
MspR9I	CCNGG	2 cut(s)	225, 362
MvaI	CCWGG	1 cut(s)	225
MwoI	GCNNNNNNNGC	2 cut(s)	366, 683
NciI	CCSGG	1 cut(s)	362
NdeII	GATC	4 cut(s)	48, 162, 277, 490
NlaIII	CATG	3 cut(s)	446, 672, 728
NlaIV	GGNNCC	2 cut(s)	285, 647
NmuCI	GTSAC	3 cut(s)	227, 317, 770
NspI	RCATGY	2 cut(s)	672, 728
PciI	ACATGT	1 cut(s)	668
PfeI	GAWTC	1 cut(s)	39
PkrI	GCNGC	2 cut(s)	676, 688
PleI	GAGTC	1 cut(s)	278
PpsI	GAGTC	1 cut(s)	278
PscI	ACATGT	1 cut(s)	668
PshAI	GACNNNNGTC	1 cut(s)	225
PsiI	TTATAA	1 cut(s)	602
Psp124BI	GAGCTC	1 cut(s)	140
Psp1406I	AACGTT	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	223
PspFI	CCCAGC	1 cut(s)	235
PspGI	CCWGG	1 cut(s)	223
PspN4I	GGNNCC	2 cut(s)	285, 647
PstI	CTGCAG	1 cut(s)	371
RsaI	GTAC	1 cut(s)	420
RsaNI	GTAC	1 cut(s)	419
RseI	CAYNNNNRTG	1 cut(s)	62
SacI	GAGCTC	1 cut(s)	140
SaqAI	TTAA	2 cut(s)	383, 698
SatI	GCNGC	2 cut(s)	675, 687
Sau3AI	GATC	4 cut(s)	48, 162, 277, 490
SchI	GAGTC	1 cut(s)	279
ScrFI	CCNGG	2 cut(s)	225, 362
SduI	GDGCHC	3 cut(s)	140, 288, 352
SfcI	CTRYAG	2 cut(s)	367, 756
SmiMI	CAYNNNNRTG	1 cut(s)	62
Sse9I	AATT	2 cut(s)	478, 629
SspMI	CTAG	3 cut(s)	345, 554, 716
SstI	GAGCTC	1 cut(s)	140
StyD4I	CCNGG	2 cut(s)	223, 360
StyI	CCWWGG	1 cut(s)	344
TaaI	ACNGT	5 cut(s)	100, 172, 500, 518, 770
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	3 cut(s)	47, 114, 219
TasI	AATT	2 cut(s)	478, 629
TfiI	GAWTC	1 cut(s)	39
Tru1I	TTAA	2 cut(s)	383, 698
Tru9I	TTAA	2 cut(s)	383, 698
TscAI	CASTG	3 cut(s)	175, 503, 640
TseFI	GTSAC	3 cut(s)	227, 317, 770
TseI	GCWGC	2 cut(s)	674, 686
Tsp45I	GTSAC	3 cut(s)	227, 317, 770
TspDTI	ATGAA	4 cut(s)	41, 73, 100, 231
TspGWI	ACGGA	1 cut(s)	731
TspRI	CASTG	3 cut(s)	175, 503, 640
XapI	RAATTY	1 cut(s)	629
XceI	RCATGY	2 cut(s)	672, 728
XmaJI	CCTAGG	1 cut(s)	344
XspI	CTAG	3 cut(s)	345, 554, 716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.