RLG00000027621

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0011310
Physical Location & Seq
Reverse (-)
13227660 .. 13231220
3561 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027621

Sequence Viewer

Length: 648 bp
ATGAAGTGCCAGAGATTCCTATCGATCCCAATCTTCGCTGTGCTTCTGTTGATGGGTTTCATCTGTTACATCACGGTCTTTATTTTCATCGACGATTGGGTTGGGTTGCAGAGCTCTGCTGGTTATCTGAACGTTCTGATCTTCACTGTCTTGGCCTCTCTTTGCCTCTTCTCTTTCTCTTCTTGTGTTCTCATCGACCCAGGTTACACCCCAGCTTCATATATCCCTGATGTTGAAGATAGTGGAGTCTCTGATCAGGAGCCGAAGAAAAATGTTATACAATCAAGGTGTTGTGACAAGTGTTCAACATACAAGCCTCCTAGGGCTCATCATTGCCGGGTCTGCAGAAGGTGTGTTTTAAGGATGGATCATCACTGTCTGTGGGTCAATAACTGTATCGGTTATTGGAACTACAAAGCCTTCTTTACGCTAGTCTTATATGCAACAATAGGAAGCTTGTATTCTACAACCATCATTATAACTTGTGCTTTGCAAAAGGACTGGGAATTCAGTGGAAGTGGGAGCCTCAAAATCTTTTATATTTTGAGGTCCTGTCGTTTTTTAGGTTACATGTGCAGCAACAATGGCTGCCTTGACCTTAACGCTTGGAACTCTTCTAGGATGGCATGTTTACCTCATCATCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

216

Amino Acids

24.45

Weight (kDa)

8.42

Isoelectric Point (pI)

43.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 94 - 182 2.4e-27 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 479
AclI AACGTT 1 cut(s) 132
AclWI GGATC 2 cut(s) 19, 375
AcsI RAATTY 1 cut(s) 506
AflIII ACRYGT 1 cut(s) 570
AgsI TTSAA 2 cut(s) 236, 306
AjnI CCWGG 1 cut(s) 199
AluBI AGCT 3 cut(s) 114, 215, 456
AluI AGCT 3 cut(s) 114, 215, 456
Alw21I GWGCWC 1 cut(s) 116
Alw26I GTCTC 1 cut(s) 253
AlwI GGATC 2 cut(s) 19, 375
AoxI GGCC 1 cut(s) 153
ApeKI GCWGC 2 cut(s) 576, 588
ApoI RAATTY 1 cut(s) 506
AspA2I CCTAGG 1 cut(s) 320
AspS9I GGNCC 1 cut(s) 549
AsuC2I CCSGG 1 cut(s) 338
AvaII GGWCC 1 cut(s) 549
AvrII CCTAGG 1 cut(s) 320
BanII GRGCYC 2 cut(s) 116, 328
Bbv12I GWGCWC 1 cut(s) 116
BbvI GCAGC 2 cut(s) 575, 588
BccI CCATC 4 cut(s) 46, 358, 479, 616
BciT130I CCWGG 1 cut(s) 201
BclI TGATCA 1 cut(s) 253
BcnI CCSGG 1 cut(s) 338
BcoDI GTCTC 1 cut(s) 253
BfaI CTAG 3 cut(s) 321, 431, 618
BfmI CTRYAG 1 cut(s) 343
BisI GCNGC 2 cut(s) 577, 589
BlnI CCTAGG 1 cut(s) 320
BlsI GCNGC 2 cut(s) 578, 590
Bme1390I CCNGG 2 cut(s) 201, 338
Bme18I GGWCC 1 cut(s) 549
BmgT120I GGNCC 1 cut(s) 549
BmiI GGNNCC 2 cut(s) 261, 524
BmrFI CCNGG 2 cut(s) 201, 338
BmrI ACTGGG 1 cut(s) 511
BmuI ACTGGG 1 cut(s) 511
BpuMI CCSGG 1 cut(s) 338
Bsa29I ATCGAT 1 cut(s) 23
BsaBI GATNNNNATC 2 cut(s) 19, 29
BsaJI CCNNGG 2 cut(s) 199, 320
Bse1I ACTGG 1 cut(s) 506
Bse3DI GCAATG 1 cut(s) 331
Bse8I GATNNNNATC 2 cut(s) 19, 29
BseBI CCWGG 1 cut(s) 201
BseCI ATCGAT 1 cut(s) 23
BseDI CCNNGG 2 cut(s) 199, 320
BseGI GGATG 3 cut(s) 369, 627, 640
BseJI GATNNNNATC 2 cut(s) 19, 29
BseMI GCAATG 1 cut(s) 331
BseNI ACTGG 1 cut(s) 506
BseXI GCAGC 2 cut(s) 575, 588
BseYI CCCAGC 1 cut(s) 211
BsgI GTGCAG 1 cut(s) 595
BshFI GGCC 1 cut(s) 155
BshVI ATCGAT 1 cut(s) 23
BsiHKAI GWGCWC 1 cut(s) 116
BsiSI CCGG 1 cut(s) 337
BsmAI GTCTC 1 cut(s) 253
BsnI GGCC 1 cut(s) 155
Bsp1286I GDGCHC 2 cut(s) 116, 328
Bsp143I GATC 4 cut(s) 24, 138, 253, 367
BspANI GGCC 1 cut(s) 155
BspDI ATCGAT 1 cut(s) 23
BspLI GGNNCC 2 cut(s) 261, 524
BspMAI CTGCAG 1 cut(s) 347
BspPI GGATC 2 cut(s) 19, 375
BsrDI GCAATG 1 cut(s) 331
BsrI ACTGG 1 cut(s) 506
BssECI CCNNGG 2 cut(s) 199, 320
BssMI GATC 4 cut(s) 24, 138, 253, 367
BssT1I CCWWGG 1 cut(s) 320
Bst2UI CCWGG 1 cut(s) 201
Bst4CI ACNGT 4 cut(s) 76, 148, 377, 395
Bst6I CTCTTC 3 cut(s) 173, 184, 619
BstF5I GGATG 3 cut(s) 369, 627, 640
BstKTI GATC 4 cut(s) 27, 141, 256, 370
BstMAI GTCTC 1 cut(s) 253
BstMBI GATC 4 cut(s) 24, 138, 253, 367
BstMWI GCNNNNNNNGC 2 cut(s) 342, 585
BstNI CCWGG 1 cut(s) 201
BstNSI RCATGY 2 cut(s) 574, 630
BstSCI CCNGG 2 cut(s) 199, 336
BstSFI CTRYAG 1 cut(s) 343
BstV1I GCAGC 2 cut(s) 575, 588
Bsu15I ATCGAT 1 cut(s) 23
BsuRI GGCC 1 cut(s) 155
BsuTUI ATCGAT 1 cut(s) 23
BtsCI GGATG 3 cut(s) 369, 627, 640
BtsIMutI CAGTG 3 cut(s) 144, 373, 517
Cfr13I GGNCC 1 cut(s) 549
ClaI ATCGAT 1 cut(s) 23
CviAII CATG 2 cut(s) 571, 627
DpnI GATC 4 cut(s) 26, 140, 255, 369
DpnII GATC 4 cut(s) 24, 138, 253, 367
Eam1104I CTCTTC 3 cut(s) 173, 184, 619
EarI CTCTTC 3 cut(s) 173, 184, 619
Ecl136II GAGCTC 1 cut(s) 114
Eco130I CCWWGG 1 cut(s) 320
Eco24I GRGCYC 2 cut(s) 116, 328
Eco47I GGWCC 1 cut(s) 549
Eco53kI GAGCTC 1 cut(s) 114
EcoICRI GAGCTC 1 cut(s) 114
EcoO109I RGGNCCY 1 cut(s) 549
EcoRI GAATTC 1 cut(s) 506
EcoRII CCWGG 1 cut(s) 199
EcoT14I CCWWGG 1 cut(s) 320
EcoT38I GRGCYC 2 cut(s) 116, 328
ErhI CCWWGG 1 cut(s) 320
FaeI CATG 2 cut(s) 574, 630
FatI CATG 2 cut(s) 570, 626
FbaI TGATCA 1 cut(s) 253
Fnu4HI GCNGC 2 cut(s) 577, 589
FokI GGATG 3 cut(s) 376, 627, 634
FriOI GRGCYC 2 cut(s) 116, 328
Fsp4HI GCNGC 2 cut(s) 577, 589
FspBI CTAG 3 cut(s) 321, 431, 618
GluI GCNGC 2 cut(s) 577, 589
GsaI CCCAGC 1 cut(s) 215
HaeIII GGCC 1 cut(s) 155
HapII CCGG 1 cut(s) 337
Hin1II CATG 2 cut(s) 574, 630
HindIII AAGCTT 1 cut(s) 454
HinfI GANTC 2 cut(s) 15, 246
HpaII CCGG 1 cut(s) 337
Hpy166II GTNNAC 1 cut(s) 632
Hpy188I TCNGA 3 cut(s) 129, 138, 253
Hpy188III TCNNGA 1 cut(s) 257
Hpy8I GTNNAC 1 cut(s) 632
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 2 cut(s) 342, 430
HpyCH4III ACNGT 4 cut(s) 76, 148, 377, 395
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 5 cut(s) 109, 345, 443, 493, 576
HpyF10VI GCNNNNNNNGC 2 cut(s) 342, 585
HpySE526I ACGT 1 cut(s) 132
Hsp92II CATG 2 cut(s) 574, 630
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 4 cut(s) 24, 138, 253, 367
LmnI GCTCC 2 cut(s) 259, 522
Lsp1109I GCAGC 2 cut(s) 575, 588
MaeI CTAG 3 cut(s) 321, 431, 618
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 4 cut(s) 65, 203, 293, 566
MalI GATC 4 cut(s) 26, 140, 255, 369
MboI GATC 4 cut(s) 24, 138, 253, 367
MboII GAAGA 7 cut(s) 25, 133, 160, 171, 248, 277, 606
MhlI GDGCHC 2 cut(s) 116, 328
MluCI AATT 1 cut(s) 506
MlyI GAGTC 1 cut(s) 255
MnlI CCTC 6 cut(s) 166, 176, 327, 536, 540, 645
MseI TTAA 2 cut(s) 359, 600
MspI CCGG 1 cut(s) 337
MspR9I CCNGG 2 cut(s) 201, 338
MvaI CCWGG 1 cut(s) 201
MwoI GCNNNNNNNGC 2 cut(s) 342, 585
NciI CCSGG 1 cut(s) 338
NdeII GATC 4 cut(s) 24, 138, 253, 367
NlaIII CATG 2 cut(s) 574, 630
NlaIV GGNNCC 2 cut(s) 261, 524
NmuCI GTSAC 1 cut(s) 293
NspI RCATGY 2 cut(s) 574, 630
PciI ACATGT 1 cut(s) 570
PfeI GAWTC 1 cut(s) 15
PkrI GCNGC 2 cut(s) 578, 590
PleI GAGTC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 254
PpuMI RGGWCCY 1 cut(s) 549
PscI ACATGT 1 cut(s) 570
PsiI TTATAA 1 cut(s) 479
Psp124BI GAGCTC 1 cut(s) 116
Psp1406I AACGTT 1 cut(s) 132
Psp5II RGGWCCY 1 cut(s) 549
Psp6I CCWGG 1 cut(s) 199
PspFI CCCAGC 1 cut(s) 211
PspGI CCWGG 1 cut(s) 199
PspN4I GGNNCC 2 cut(s) 261, 524
PspPI GGNCC 1 cut(s) 549
PspPPI RGGWCCY 1 cut(s) 549
PstI CTGCAG 1 cut(s) 347
SacI GAGCTC 1 cut(s) 116
SaqAI TTAA 2 cut(s) 359, 600
SatI GCNGC 2 cut(s) 577, 589
Sau3AI GATC 4 cut(s) 24, 138, 253, 367
Sau96I GGNCC 1 cut(s) 549
SchI GAGTC 1 cut(s) 255
ScrFI CCNGG 2 cut(s) 201, 338
SduI GDGCHC 2 cut(s) 116, 328
SfcI CTRYAG 1 cut(s) 343
SinI GGWCC 1 cut(s) 549
Sse9I AATT 1 cut(s) 506
SspMI CTAG 3 cut(s) 321, 431, 618
SstI GAGCTC 1 cut(s) 116
StyD4I CCNGG 2 cut(s) 199, 336
StyI CCWWGG 1 cut(s) 320
TaaI ACNGT 4 cut(s) 76, 148, 377, 395
TaiI ACGT 1 cut(s) 135
TaqI TCGA 3 cut(s) 23, 90, 195
TasI AATT 1 cut(s) 506
TfiI GAWTC 1 cut(s) 15
Tru1I TTAA 2 cut(s) 359, 600
Tru9I TTAA 2 cut(s) 359, 600
TscAI CASTG 3 cut(s) 151, 380, 517
TseFI GTSAC 1 cut(s) 293
TseI GCWGC 2 cut(s) 576, 588
Tsp45I GTSAC 1 cut(s) 293
TspDTI ATGAA 4 cut(s) 17, 49, 76, 207
TspRI CASTG 3 cut(s) 151, 380, 517
VpaK11BI GGWCC 1 cut(s) 549
XapI RAATTY 1 cut(s) 506
XceI RCATGY 2 cut(s) 574, 630
XmaJI CCTAGG 1 cut(s) 320
XspI CTAG 3 cut(s) 321, 431, 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.