Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0011310

Physical Location & Seq

Genomic Coordinates Forward (+)

24267660 .. 24271160

Gene Structure 3501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G209800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGAAGTGCGAAAGATTCCTTTCAATTCCAATCTTTATGGTGTTTCTGTTAATTGGTGTTGTGTGTTACGTCACGCTTTTCATCTTCATTGAAGATTGGGTTGGGTTGAAGAGCTCTGCTGGTTCTTTGAACGCTTTGATTTTCATTTCCTTGGCCTCTCTCTGCCTCTTCTCTTTCTTTTGTTGTGTTCTCATTGACCCAGGTTATGTTCCAGCTTCCTATGTCCCTGATATTGAAGACAGTGAGGCATCTGATCAAGAACTCAAGAAAAATGGCATATCATCCAGGCGCTGTGACAAGTGTTCTACATACAAACCTCCCAGGGCTCATCATTGCCGGGTCTGCAGAAGGTGTGTTTTAAGGATGGATCATCACTGTCTGTGGATCAATAACTGTGTTGGTTATTGGAACTACAAGGCCTTTTTTATGCTTGTCTTGTATGCAACACTAGGATGCTTGTATTCTACAGTTATGATTATATATTGTGCATCTTATAAGGACTTGGAATACAGTGGAAGTGGTGGCCTCAAGGTTTTTTATGTTATGTCTGGACTAATGATGGCTTCCTTGAGCATAATGCTTGGAACTCTTTTGGGCTGGCACGTCTACCTCATCATCCACAATATGACGACTATAGAGTATTATGAAGGAATTCGGGCATCGTGGTTGGCTAGGAAATCTGGCCAGAGCTACAGACATCCATACAATCTTAGTTTCTACAAAAACATTATTTCGGTCTTGGGTCCAAACATGCCGAAATGGTTATGGCCCACTGCAGTAAGCCATCTAAAAGATGGACTTATCTTCCCTACTCCGCGTGATAATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHHC

Protein Analysis

277

Amino Acids

31.53

Weight (kDa)

8.69

Isoelectric Point (pI)

39.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04270
fragaria_vesca	FvH4_7g18860
malus_domestica	MD01G1104200.v1.1 MD07G1171000.v1.1
prunus_persica	Prupe.2G209800_v2.0.a1 Prupe.2G209800_v2.0.a1 Prupe.2G209800_v2.0.a1
pyrus_communis	pycom01g13090 pycom07g16470
rosa_chinensis	RchiOBHm_Chr1g0362791
rosa_laevigata	RLG00000027621
rosa_multiflora	Rmu_co8462993.1_g000001 Rmu_sc0000046.1_g000004
rosa_roxburghii	Rroxscaffold_4G00293760
rosa_rugosa	Rorug01G0301300
rosa_samantha	Rh1AG310100 Rh1BG273500 Rh1CG290600 Rh1DG304200
rosa_wichuraiana	Rw1G027510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	495
AccI	GTMKAC	1 cut(s)	606
AccII	CGCG	1 cut(s)	817
AciI	CCGC	1 cut(s)	815
AclWI	GGATC	2 cut(s)	375, 392
AcoI	YGGCCR	1 cut(s)	682
AcsI	RAATTY	1 cut(s)	651
AgsI	TTSAA	5 cut(s)	24, 92, 109, 130, 236
AjiI	CACGTC	1 cut(s)	604
AjnI	CCWGG	3 cut(s)	199, 284, 320
AjuI	GAANNNNNNNTTGG	2 cut(s)	84, 116
AluBI	AGCT	3 cut(s)	114, 215, 690
AluI	AGCT	3 cut(s)	114, 215, 690
Alw21I	GWGCWC	1 cut(s)	116
AlwI	GGATC	2 cut(s)	375, 392
AlwNI	CAGNNNCTG	1 cut(s)	291
AoxI	GGCC	5 cut(s)	153, 417, 523, 682, 767
ApoI	RAATTY	1 cut(s)	651
Asp700I	GAANNNNTTC	1 cut(s)	651
AspLEI	GCGC	1 cut(s)	291
AspS9I	GGNCC	2 cut(s)	743, 768
AsuC2I	CCSGG	1 cut(s)	338
AvaII	GGWCC	1 cut(s)	743
BalI	TGGCCA	1 cut(s)	684
BanII	GRGCYC	2 cut(s)	116, 328
BbsI	GAAGAC	1 cut(s)	243
Bbv12I	GWGCWC	1 cut(s)	116
BccI	CCATC	4 cut(s)	358, 553, 788, 792
BciT130I	CCWGG	3 cut(s)	201, 286, 322
BclI	TGATCA	1 cut(s)	253
BcnI	CCSGG	1 cut(s)	338
BfaI	CTAG	2 cut(s)	449, 672
BfmI	CTRYAG	5 cut(s)	343, 465, 633, 691, 774
BfoI	RGCGCY	1 cut(s)	292
Bme1390I	CCNGG	4 cut(s)	201, 286, 322, 338
Bme18I	GGWCC	1 cut(s)	743
BmgBI	CACGTC	1 cut(s)	604
BmgT120I	GGNCC	2 cut(s)	743, 768
BmiI	GGNNCC	1 cut(s)	744
BmrFI	CCNGG	4 cut(s)	201, 286, 322, 338
BmsI	GCATC	4 cut(s)	257, 443, 497, 668
BpiI	GAAGAC	1 cut(s)	243
BpuEI	CTTGAG	3 cut(s)	248, 512, 589
BpuMI	CCSGG	1 cut(s)	338
BsaJI	CCNNGG	4 cut(s)	150, 199, 320, 321
Bse3DI	GCAATG	1 cut(s)	331
BseBI	CCWGG	3 cut(s)	201, 286, 322
BseDI	CCNNGG	4 cut(s)	150, 199, 320, 321
BseGI	GGATG	5 cut(s)	281, 369, 458, 615, 697
BseMI	GCAATG	1 cut(s)	331
Bsh1236I	CGCG	1 cut(s)	817
BshFI	GGCC	5 cut(s)	155, 419, 525, 684, 769
BsiHKAI	GWGCWC	1 cut(s)	116
BsiSI	CCGG	1 cut(s)	337
BslFI	GGGAC	1 cut(s)	209
BsmFI	GGGAC	1 cut(s)	209
BsnI	GGCC	5 cut(s)	155, 419, 525, 684, 769
Bsp1286I	GDGCHC	2 cut(s)	116, 328
Bsp143I	GATC	3 cut(s)	253, 367, 384
BspACI	CCGC	1 cut(s)	815
BspANI	GGCC	5 cut(s)	155, 419, 525, 684, 769
BspFNI	CGCG	1 cut(s)	817
BspHI	TCATGA	1 cut(s)	827
BspLI	GGNNCC	1 cut(s)	744
BspMAI	CTGCAG	2 cut(s)	347, 778
BspPI	GGATC	2 cut(s)	375, 392
BspQI	GCTCTTC	1 cut(s)	104
BsrDI	GCAATG	1 cut(s)	331
BssECI	CCNNGG	4 cut(s)	150, 199, 320, 321
BssMI	GATC	3 cut(s)	253, 367, 384
BssT1I	CCWWGG	1 cut(s)	150
Bst2UI	CCWGG	3 cut(s)	201, 286, 322
Bst4CI	ACNGT	5 cut(s)	242, 377, 395, 469, 512
Bst6I	CTCTTC	2 cut(s)	104, 173
BstC8I	GCNNGC	1 cut(s)	599
BstDEI	CTNAG	1 cut(s)	710
BstF5I	GGATG	5 cut(s)	281, 369, 458, 615, 697
BstFNI	CGCG	1 cut(s)	817
BstH2I	RGCGCY	1 cut(s)	292
BstHHI	GCGC	1 cut(s)	291
BstKTI	GATC	3 cut(s)	256, 370, 387
BstMBI	GATC	3 cut(s)	253, 367, 384
BstMWI	GCNNNNNNNGC	1 cut(s)	342
BstNI	CCWGG	3 cut(s)	201, 286, 322
BstNSI	RCATGY	1 cut(s)	754
BstSCI	CCNGG	4 cut(s)	199, 284, 320, 336
BstSFI	CTRYAG	5 cut(s)	343, 465, 633, 691, 774
BstUI	CGCG	1 cut(s)	817
BstV2I	GAAGAC	1 cut(s)	243
BsuRI	GGCC	5 cut(s)	155, 419, 525, 684, 769
BtrI	CACGTC	1 cut(s)	604
BtsCI	GGATG	5 cut(s)	281, 369, 458, 615, 697
BtsI	GCAGTG	1 cut(s)	771
BtsIMutI	CAGTG	4 cut(s)	247, 373, 517, 771
Cac8I	GCNNGC	1 cut(s)	599
CaiI	CAGNNNCTG	1 cut(s)	291
CciI	TCATGA	1 cut(s)	827
CfoI	GCGC	1 cut(s)	291
Cfr13I	GGNCC	2 cut(s)	743, 768
CviAII	CATG	2 cut(s)	751, 828
DdeI	CTNAG	1 cut(s)	710
DpnI	GATC	3 cut(s)	255, 369, 386
DpnII	GATC	3 cut(s)	253, 367, 384
EaeI	YGGCCR	1 cut(s)	682
Eam1104I	CTCTTC	2 cut(s)	104, 173
EarI	CTCTTC	2 cut(s)	104, 173
Ecl136II	GAGCTC	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	150
Eco147I	AGGCCT	1 cut(s)	419
Eco24I	GRGCYC	2 cut(s)	116, 328
Eco47I	GGWCC	1 cut(s)	743
Eco53kI	GAGCTC	1 cut(s)	114
EcoICRI	GAGCTC	1 cut(s)	114
EcoRI	GAATTC	1 cut(s)	651
EcoRII	CCWGG	3 cut(s)	199, 284, 320
EcoT14I	CCWWGG	1 cut(s)	150
EcoT38I	GRGCYC	2 cut(s)	116, 328
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	2 cut(s)	754, 831
FalI	AAGNNNNNCTT	2 cut(s)	783, 815
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	2 cut(s)	750, 827
FbaI	TGATCA	1 cut(s)	253
FblI	GTMKAC	1 cut(s)	606
FokI	GGATG	5 cut(s)	268, 376, 465, 602, 684
FriOI	GRGCYC	2 cut(s)	116, 328
FspBI	CTAG	2 cut(s)	449, 672
GlaI	GCGC	1 cut(s)	290
HaeII	RGCGCY	1 cut(s)	292
HaeIII	GGCC	5 cut(s)	155, 419, 525, 684, 769
HapII	CCGG	1 cut(s)	337
HhaI	GCGC	1 cut(s)	291
Hin1II	CATG	2 cut(s)	754, 831
Hin6I	GCGC	1 cut(s)	289
HinP1I	GCGC	1 cut(s)	289
HinfI	GANTC	1 cut(s)	15
HpaII	CCGG	1 cut(s)	337
Hpy166II	GTNNAC	1 cut(s)	607
Hpy188I	TCNGA	1 cut(s)	253
Hpy188III	TCNNGA	4 cut(s)	257, 265, 549, 828
Hpy8I	GTNNAC	1 cut(s)	607
HpyAV	CCTTC	2 cut(s)	342, 641
HpyCH4III	ACNGT	5 cut(s)	242, 377, 395, 469, 512
HpyCH4IV	ACGT	2 cut(s)	69, 603
HpyCH4V	TGCA	4 cut(s)	345, 443, 488, 776
HpyF10VI	GCNNNNNNNGC	1 cut(s)	342
HpyF3I	CTNAG	1 cut(s)	710
HpySE526I	ACGT	2 cut(s)	69, 603
Hsp92II	CATG	2 cut(s)	754, 831
HspAI	GCGC	1 cut(s)	289
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	3 cut(s)	253, 367, 384
LguI	GCTCTTC	1 cut(s)	104
LweI	GCATC	4 cut(s)	257, 443, 497, 668
MaeI	CTAG	2 cut(s)	449, 672
MaeII	ACGT	2 cut(s)	69, 603
MaeIII	GTNAC	3 cut(s)	65, 70, 293
MalI	GATC	3 cut(s)	255, 369, 386
MboI	GATC	3 cut(s)	253, 367, 384
MboII	GAAGA	6 cut(s)	76, 104, 121, 160, 248, 796
MhlI	GDGCHC	2 cut(s)	116, 328
MlsI	TGGCCA	1 cut(s)	684
MluCI	AATT	4 cut(s)	24, 51, 651, 823
MluNI	TGGCCA	1 cut(s)	684
MnlI	CCTC	6 cut(s)	166, 176, 238, 327, 536, 620
Mox20I	TGGCCA	1 cut(s)	684
MroXI	GAANNNNTTC	1 cut(s)	651
MscI	TGGCCA	1 cut(s)	684
MseI	TTAA	2 cut(s)	50, 359
MslI	CAYNNNNRTG	1 cut(s)	451
Msp20I	TGGCCA	1 cut(s)	684
MspI	CCGG	1 cut(s)	337
MspR9I	CCNGG	4 cut(s)	201, 286, 322, 338
MvaI	CCWGG	3 cut(s)	201, 286, 322
MvnI	CGCG	1 cut(s)	817
MwoI	GCNNNNNNNGC	1 cut(s)	342
NciI	CCSGG	1 cut(s)	338
NdeII	GATC	3 cut(s)	253, 367, 384
NlaIII	CATG	2 cut(s)	754, 831
NlaIV	GGNNCC	1 cut(s)	744
NmuCI	GTSAC	2 cut(s)	70, 293
NspI	RCATGY	1 cut(s)	754
PagI	TCATGA	1 cut(s)	827
PasI	CCCWGGG	1 cut(s)	321
PceI	AGGCCT	1 cut(s)	419
PciSI	GCTCTTC	1 cut(s)	104
PdmI	GAANNNNTTC	1 cut(s)	651
PfeI	GAWTC	1 cut(s)	15
PsiI	TTATAA	1 cut(s)	495
Psp124BI	GAGCTC	1 cut(s)	116
Psp6I	CCWGG	3 cut(s)	199, 284, 320
PspGI	CCWGG	3 cut(s)	199, 284, 320
PspN4I	GGNNCC	1 cut(s)	744
PspPI	GGNCC	2 cut(s)	743, 768
PstI	CTGCAG	2 cut(s)	347, 778
PstNI	CAGNNNCTG	1 cut(s)	291
RseI	CAYNNNNRTG	1 cut(s)	451
SacI	GAGCTC	1 cut(s)	116
SapI	GCTCTTC	1 cut(s)	104
SaqAI	TTAA	2 cut(s)	50, 359
Sau3AI	GATC	3 cut(s)	253, 367, 384
Sau96I	GGNCC	2 cut(s)	743, 768
ScrFI	CCNGG	4 cut(s)	201, 286, 322, 338
SduI	GDGCHC	2 cut(s)	116, 328
SfaNI	GCATC	4 cut(s)	257, 443, 497, 668
SfcI	CTRYAG	5 cut(s)	343, 465, 633, 691, 774
SinI	GGWCC	1 cut(s)	743
SmiMI	CAYNNNNRTG	1 cut(s)	451
SmlI	CTYRAG	3 cut(s)	263, 527, 568
SmoI	CTYRAG	3 cut(s)	263, 527, 568
Sse9I	AATT	4 cut(s)	24, 51, 651, 823
SseBI	AGGCCT	1 cut(s)	419
SsiI	CCGC	1 cut(s)	815
SspMI	CTAG	2 cut(s)	449, 672
SstI	GAGCTC	1 cut(s)	116
StuI	AGGCCT	1 cut(s)	419
StyD4I	CCNGG	4 cut(s)	199, 284, 320, 336
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	5 cut(s)	242, 377, 395, 469, 512
TaiI	ACGT	2 cut(s)	72, 606
TaqII	GACCGA	1 cut(s)	724
TasI	AATT	4 cut(s)	24, 51, 651, 823
TfiI	GAWTC	1 cut(s)	15
Tru1I	TTAA	2 cut(s)	50, 359
Tru9I	TTAA	2 cut(s)	50, 359
TscAI	CASTG	4 cut(s)	247, 380, 517, 778
TseFI	GTSAC	2 cut(s)	70, 293
Tsp45I	GTSAC	2 cut(s)	70, 293
TspDTI	ATGAA	6 cut(s)	17, 70, 76, 133, 660, 816
TspRI	CASTG	4 cut(s)	247, 380, 517, 778
VpaK11BI	GGWCC	1 cut(s)	743
XapI	RAATTY	1 cut(s)	651
XceI	RCATGY	1 cut(s)	754
XcmI	CCANNNNNNNNNTGG	1 cut(s)	791
XmiI	GTMKAC	1 cut(s)	606
XmnI	GAANNNNTTC	1 cut(s)	651
XspI	CTAG	2 cut(s)	449, 672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.