Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009398

Physical Location & Seq

Genomic Coordinates Reverse (-)

16436816 .. 16441110

Gene Structure 4295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g20140.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGTCGAAGGAGAGAGCCAAACGAGGCACACTGCCTCCAGCTCAAGAGCAAATTGAGAAATTTGAGAAAGTTGTGGAGGAAGGTAACTACTATGGAGCTCAGCAGCTGTTCAAATCGATTACAGCGAGATATGTAGCGGCTCAGAGGTATCCTGAGGCTTTGGATATACTTGAGTCGGGTGCATGCATCCAGTTGAAACATGGGCAGGTTACATGTGGAGCAGAATTAGCTTCTTTGTTTGTGGAGACACTTGTCAAAGGGAAATTCCCTTATAACGATGAAACCCTCGTTCGTGTCAGGAAAATTTATAAACAATTTCCTAAGATACCTGTGCCACAACAGTTAGGGGATTTAGATGATGACATGCAACGACTTTCTGAAACACTGGGAACAGCAAAAACATGTGTTGAAGGATGCTCATCATTCCTAAAAGCTGCTATCAAGTGGTCTGCGGAGTTTGGTGCACCTAGGGCTGGGGCTCCAGAAATACATGTTATGCTAGCTAACTATATGTACTTTGAATCTCCTGAGGTGGACATGGTTAGAGTCGCACAACATTTTGTCAGAGGAAACAACCCGAAAGAATTTGCTTCTACTTTAGTACATTTCATGGGCAAGTGTTATCCAGGGGAAGATGATGTGGCCATTGCAAGGGCAGTTTTAATGTATTTGGCTTTAGGTAATCTGAGAGATGCCAATGTTCTCATGGATGAGATAAAAATGCAAGTAGAAGCTAAGCAGCTTGAATTTCCTAAATCTGATTTGATGCAGTTCATTAATTTTCTTTTGGAAACGATGCTGCGAGATGCTTTTCCTATTTTTAATATGTTGAGATCGAATTTCAAATCAAGCTTAGACAGAGAGCCTAGTTTTCACGAGTTGCTAGATGAAATTGCAGAGAAGTTTTATGGAGTAAGGCGGAGAAATCCTCTACAAGGGATGGGAATGTTTGGGGAGATCTTCAAGATGATGGGAGGTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF410

Protein Analysis

328

Amino Acids

37.07

Weight (kDa)

5.88

Isoelectric Point (pI)

39.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GET4	PF04190	48 - 224	6e-38	Golgi to ER traffic protein 4
GET4	PF04190	230 - 278	1.5e-08	Golgi to ER traffic protein 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009398)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63220 AT5G63220 AT5G63220
fragaria_vesca	FvH4_7g20140 FvH4_7g20140
malus_domestica	MD01G1131100.v1.1 MD07G1179200.v1.1
prunus_persica	Prupe.2G218300_v2.0.a1
pyrus_communis	pycom01g13990 pycom07g17280
rosa_chinensis	RchiOBHm_Chr1g0364111
rosa_laevigata	RLG00000027515
rosa_multiflora	Rmu_co8195120.1_g000001 Rmu_sc0000071.1_g000019 Rmu_sc0011704.1_g000003
rosa_roxburghii	Rroxscaffold_4G00292630
rosa_rugosa	Rorug01G0313600
rosa_samantha	Rh1AG321100 Rh1BG284300 Rh1CG300700 Rh1DG315700
rosa_wichuraiana	Rw1G028470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	273, 309
Acc36I	ACCTGC	1 cut(s)	196
AciI	CCGC	3 cut(s)	137, 452, 919
AcoI	YGGCCR	1 cut(s)	642
AcsI	RAATTY	6 cut(s)	59, 263, 303, 584, 746, 838
AfaI	GTAC	2 cut(s)	515, 603
AfiI	CCNNNNNNNGG	3 cut(s)	473, 651, 935
AflIII	ACRYGT	3 cut(s)	212, 401, 490
AgsI	TTSAA	7 cut(s)	112, 196, 410, 521, 746, 844, 964
AjnI	CCWGG	1 cut(s)	625
AluBI	AGCT	9 cut(s)	41, 98, 106, 230, 434, 503, 734, 742, 852
AluI	AGCT	9 cut(s)	41, 98, 106, 230, 434, 503, 734, 742, 852
Alw21I	GWGCWC	2 cut(s)	100, 466
Alw26I	GTCTC	1 cut(s)	239
Alw44I	GTGCAC	1 cut(s)	462
AlwNI	CAGNNNCTG	1 cut(s)	106
AoxI	GGCC	1 cut(s)	642
ApaLI	GTGCAC	1 cut(s)	462
ApeKI	GCWGC	4 cut(s)	103, 434, 739, 799
ApoI	RAATTY	6 cut(s)	59, 263, 303, 584, 746, 838
AseI	ATTAAT	1 cut(s)	777
AspA2I	CCTAGG	1 cut(s)	467
AsuNHI	GCTAGC	1 cut(s)	499
AvrII	CCTAGG	1 cut(s)	467
AxyI	CCTNAGG	2 cut(s)	153, 528
BaeGI	GKGCMC	1 cut(s)	466
BalI	TGGCCA	1 cut(s)	644
BanII	GRGCYC	2 cut(s)	100, 481
BauI	CACGAG	1 cut(s)	875
Bbv12I	GWGCWC	2 cut(s)	100, 466
BbvI	GCAGC	4 cut(s)	115, 421, 751, 786
BccI	CCATC	2 cut(s)	934, 964
BciT130I	CCWGG	1 cut(s)	627
BciVI	GTATCC	1 cut(s)	159
BcoDI	GTCTC	1 cut(s)	239
BfaI	CTAG	4 cut(s)	468, 500, 867, 884
BfuAI	ACCTGC	1 cut(s)	196
BfuI	GTATCC	1 cut(s)	159
BglII	AGATCT	1 cut(s)	957
BisI	GCNGC	5 cut(s)	104, 138, 435, 740, 800
BlnI	CCTAGG	1 cut(s)	467
BlpI	GCTNAGC	2 cut(s)	99, 735
BlsI	GCNGC	5 cut(s)	105, 139, 436, 741, 801
Bme1390I	CCNGG	1 cut(s)	627
BmiI	GGNNCC	1 cut(s)	480
BmrFI	CCNGG	1 cut(s)	627
BmrI	ACTGGG	1 cut(s)	395
BmsI	GCATC	6 cut(s)	195, 404, 682, 756, 786, 796
BmtI	GCTAGC	1 cut(s)	503
BmuI	ACTGGG	1 cut(s)	395
BoxI	GACNNNNGTC	1 cut(s)	251
BplI	GAGNNNNNCTC	2 cut(s)	913, 945
BpmI	CTGGAG	2 cut(s)	21, 465
Bpu1102I	GCTNAGC	2 cut(s)	99, 735
BpuEI	CTTGAG	2 cut(s)	27, 191
Bsa29I	ATCGAT	1 cut(s)	116
BsaBI	GATNNNNATC	1 cut(s)	418
BsaJI	CCNNGG	2 cut(s)	467, 626
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bsc4I	CCNNNNNNNGG	3 cut(s)	473, 651, 935
Bse1I	ACTGG	2 cut(s)	190, 390
Bse21I	CCTNAGG	2 cut(s)	153, 528
Bse3DI	GCAATG	1 cut(s)	645
Bse8I	GATNNNNATC	1 cut(s)	418
BseBI	CCWGG	1 cut(s)	627
BseCI	ATCGAT	1 cut(s)	116
BseDI	CCNNGG	2 cut(s)	467, 626
BseGI	GGATG	4 cut(s)	186, 419, 715, 945
BseJI	GATNNNNATC	1 cut(s)	418
BseLI	CCNNNNNNNGG	3 cut(s)	473, 651, 935
BseMI	GCAATG	1 cut(s)	645
BseMII	CTCAG	5 cut(s)	113, 144, 155, 519, 677
BseNI	ACTGG	2 cut(s)	190, 390
BseSI	GKGCMC	1 cut(s)	466
BseXI	GCAGC	4 cut(s)	115, 421, 751, 786
BseYI	CCCAGC	1 cut(s)	473
BshFI	GGCC	1 cut(s)	644
BshVI	ATCGAT	1 cut(s)	116
BsiHKAI	GWGCWC	2 cut(s)	100, 466
BslI	CCNNNNNNNGG	3 cut(s)	473, 651, 935
BsmAI	GTCTC	1 cut(s)	239
BsnI	GGCC	1 cut(s)	644
Bsp1286I	GDGCHC	3 cut(s)	100, 466, 481
Bsp143I	GATC	2 cut(s)	833, 957
Bsp1720I	GCTNAGC	2 cut(s)	99, 735
BspACI	CCGC	3 cut(s)	137, 452, 919
BspANI	GGCC	1 cut(s)	644
BspCNI	CTCAG	5 cut(s)	112, 145, 154, 520, 678
BspDI	ATCGAT	1 cut(s)	116
BspLI	GGNNCC	1 cut(s)	480
BspMI	ACCTGC	1 cut(s)	196
BspOI	GCTAGC	1 cut(s)	503
BsrDI	GCAATG	1 cut(s)	645
BsrI	ACTGG	2 cut(s)	190, 390
BssECI	CCNNGG	2 cut(s)	467, 626
BssMI	GATC	2 cut(s)	833, 957
BssSI	CACGAG	1 cut(s)	875
BssT1I	CCWWGG	1 cut(s)	467
Bst2BI	CACGAG	1 cut(s)	875
Bst2UI	CCWGG	1 cut(s)	627
Bst4CI	ACNGT	1 cut(s)	342
BstC8I	GCNNGC	2 cut(s)	184, 501
BstDEI	CTNAG	8 cut(s)	99, 141, 153, 321, 528, 686, 735, 853
BstENI	CCTNNNNNAGG	1 cut(s)	933
BstF5I	GGATG	4 cut(s)	186, 419, 715, 945
BstKTI	GATC	2 cut(s)	836, 960
BstMAI	GTCTC	1 cut(s)	239
BstMBI	GATC	2 cut(s)	833, 957
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 470
BstNI	CCWGG	1 cut(s)	627
BstNSI	RCATGY	5 cut(s)	186, 216, 367, 405, 494
BstPAI	GACNNNNGTC	1 cut(s)	251
BstSCI	CCNGG	1 cut(s)	625
BstSLI	GKGCMC	1 cut(s)	466
BstV1I	GCAGC	4 cut(s)	115, 421, 751, 786
BstX2I	RGATCY	1 cut(s)	957
BstYI	RGATCY	1 cut(s)	957
Bsu15I	ATCGAT	1 cut(s)	116
Bsu36I	CCTNAGG	2 cut(s)	153, 528
BsuI	GTATCC	1 cut(s)	159
BsuRI	GGCC	1 cut(s)	644
BsuTUI	ATCGAT	1 cut(s)	116
BtsCI	GGATG	4 cut(s)	186, 419, 715, 945
BtsI	GCAGTG	1 cut(s)	29
BtsIMutI	CAGTG	2 cut(s)	29, 383
BveI	ACCTGC	1 cut(s)	196
Cac8I	GCNNGC	2 cut(s)	184, 501
CaiI	CAGNNNCTG	1 cut(s)	106
ClaI	ATCGAT	1 cut(s)	116
Csp6I	GTAC	2 cut(s)	514, 602
CviAII	CATG	9 cut(s)	183, 200, 213, 364, 402, 491, 538, 610, 706
CviQI	GTAC	2 cut(s)	514, 602
DdeI	CTNAG	8 cut(s)	99, 141, 153, 321, 528, 686, 735, 853
DpnI	GATC	2 cut(s)	835, 959
DpnII	GATC	2 cut(s)	833, 957
EaeI	YGGCCR	1 cut(s)	642
EciI	GGCGGA	1 cut(s)	934
Ecl136II	GAGCTC	1 cut(s)	98
Eco130I	CCWWGG	1 cut(s)	467
Eco24I	GRGCYC	2 cut(s)	100, 481
Eco53kI	GAGCTC	1 cut(s)	98
Eco81I	CCTNAGG	2 cut(s)	153, 528
EcoICRI	GAGCTC	1 cut(s)	98
EcoNI	CCTNNNNNAGG	1 cut(s)	933
EcoRII	CCWGG	1 cut(s)	625
EcoT14I	CCWWGG	1 cut(s)	467
EcoT22I	ATGCAT	1 cut(s)	188
EcoT38I	GRGCYC	2 cut(s)	100, 481
ErhI	CCWWGG	1 cut(s)	467
FaeI	CATG	9 cut(s)	186, 203, 216, 367, 405, 494, 541, 613, 709
FatI	CATG	9 cut(s)	182, 199, 212, 363, 401, 490, 537, 609, 705
Fnu4HI	GCNGC	5 cut(s)	104, 138, 435, 740, 800
FokI	GGATG	4 cut(s)	173, 426, 722, 952
FriOI	GRGCYC	2 cut(s)	100, 481
Fsp4HI	GCNGC	5 cut(s)	104, 138, 435, 740, 800
FspBI	CTAG	4 cut(s)	468, 500, 867, 884
GluI	GCNGC	5 cut(s)	104, 138, 435, 740, 800
GsaI	CCCAGC	1 cut(s)	477
GsuI	CTGGAG	2 cut(s)	21, 465
HaeIII	GGCC	1 cut(s)	644
Hin1II	CATG	9 cut(s)	186, 203, 216, 367, 405, 494, 541, 613, 709
HindIII	AAGCTT	1 cut(s)	850
HinfI	GANTC	3 cut(s)	173, 521, 546
Hpy166II	GTNNAC	2 cut(s)	464, 535
Hpy188I	TCNGA	5 cut(s)	144, 379, 566, 687, 760
Hpy188III	TCNNGA	7 cut(s)	44, 152, 298, 482, 527, 875, 964
Hpy8I	GTNNAC	2 cut(s)	464, 535
HpyAV	CCTTC	2 cut(s)	74, 404
HpyCH4III	ACNGT	1 cut(s)	342
HpyCH4V	TGCA	8 cut(s)	182, 186, 367, 464, 650, 724, 769, 896
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 470
HpyF3I	CTNAG	8 cut(s)	99, 141, 153, 321, 528, 686, 735, 853
Hsp92II	CATG	9 cut(s)	186, 203, 216, 367, 405, 494, 541, 613, 709
Kzo9I	GATC	2 cut(s)	833, 957
LmnI	GCTCC	3 cut(s)	95, 218, 484
Lsp1109I	GCAGC	4 cut(s)	115, 421, 751, 786
LweI	GCATC	6 cut(s)	195, 404, 682, 756, 786, 796
MaeI	CTAG	4 cut(s)	468, 500, 867, 884
MaeIII	GTNAC	2 cut(s)	83, 208
MalI	GATC	2 cut(s)	835, 959
MboI	GATC	2 cut(s)	833, 957
MboII	GAAGA	2 cut(s)	644, 952
MflI	RGATCY	1 cut(s)	957
MhlI	GDGCHC	3 cut(s)	100, 466, 481
MlsI	TGGCCA	1 cut(s)	644
MluNI	TGGCCA	1 cut(s)	644
MlyI	GAGTC	2 cut(s)	182, 555
Mox20I	TGGCCA	1 cut(s)	644
Mph1103I	ATGCAT	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	644
MseI	TTAA	3 cut(s)	662, 777, 822
Msp20I	TGGCCA	1 cut(s)	644
MspA1I	CMGCKG	1 cut(s)	106
MspR9I	CCNGG	1 cut(s)	627
MvaI	CCWGG	1 cut(s)	627
MwoI	GCNNNNNNNGC	2 cut(s)	227, 470
NdeII	GATC	2 cut(s)	833, 957
NheI	GCTAGC	1 cut(s)	499
NlaIII	CATG	9 cut(s)	186, 203, 216, 367, 405, 494, 541, 613, 709
NlaIV	GGNNCC	1 cut(s)	480
NsiI	ATGCAT	1 cut(s)	188
NspI	RCATGY	5 cut(s)	186, 216, 367, 405, 494
PaeI	GCATGC	1 cut(s)	186
PciI	ACATGT	3 cut(s)	212, 401, 490
PcsI	WCGNNNNNNNCGW	1 cut(s)	122
PfeI	GAWTC	1 cut(s)	521
PkrI	GCNGC	5 cut(s)	105, 139, 436, 741, 801
PleI	GAGTC	2 cut(s)	181, 554
PpsI	GAGTC	2 cut(s)	181, 554
PscI	ACATGT	3 cut(s)	212, 401, 490
PshAI	GACNNNNGTC	1 cut(s)	251
PshBI	ATTAAT	1 cut(s)	777
PsiI	TTATAA	2 cut(s)	273, 309
Psp124BI	GAGCTC	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	625
PspFI	CCCAGC	1 cut(s)	473
PspGI	CCWGG	1 cut(s)	625
PspN4I	GGNNCC	1 cut(s)	480
PstNI	CAGNNNCTG	1 cut(s)	106
PsuI	RGATCY	1 cut(s)	957
PvuII	CAGCTG	1 cut(s)	106
RsaI	GTAC	2 cut(s)	515, 603
RsaNI	GTAC	2 cut(s)	514, 602
SacI	GAGCTC	1 cut(s)	100
SaqAI	TTAA	3 cut(s)	662, 777, 822
SatI	GCNGC	5 cut(s)	104, 138, 435, 740, 800
Sau3AI	GATC	2 cut(s)	833, 957
SchI	GAGTC	2 cut(s)	182, 555
ScrFI	CCNGG	1 cut(s)	627
SduI	GDGCHC	3 cut(s)	100, 466, 481
SfaNI	GCATC	6 cut(s)	195, 404, 682, 756, 786, 796
SmlI	CTYRAG	2 cut(s)	42, 170
SmoI	CTYRAG	2 cut(s)	42, 170
SphI	GCATGC	1 cut(s)	186
SsiI	CCGC	3 cut(s)	137, 452, 919
SspMI	CTAG	4 cut(s)	468, 500, 867, 884
SstI	GAGCTC	1 cut(s)	100
StyD4I	CCNGG	1 cut(s)	625
StyI	CCWWGG	1 cut(s)	467
TaaI	ACNGT	1 cut(s)	342
TaqI	TCGA	3 cut(s)	5, 116, 836
TatI	WGTACW	2 cut(s)	513, 601
TauI	GCSGC	1 cut(s)	140
TfiI	GAWTC	1 cut(s)	521
Tru1I	TTAA	3 cut(s)	662, 777, 822
Tru9I	TTAA	3 cut(s)	662, 777, 822
TscAI	CASTG	2 cut(s)	36, 390
TseI	GCWGC	4 cut(s)	103, 434, 739, 799
TspDTI	ATGAA	4 cut(s)	294, 598, 763, 903
TspRI	CASTG	2 cut(s)	36, 390
VneI	GTGCAC	1 cut(s)	462
VspI	ATTAAT	1 cut(s)	777
XagI	CCTNNNNNAGG	1 cut(s)	933
XapI	RAATTY	6 cut(s)	59, 263, 303, 584, 746, 838
XceI	RCATGY	5 cut(s)	186, 216, 367, 405, 494
XcmI	CCANNNNNNNNNTGG	2 cut(s)	197, 703
XmaJI	CCTAGG	1 cut(s)	467
XspI	CTAG	4 cut(s)	468, 500, 867, 884
Zsp2I	ATGCAT	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.