Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0009398

Physical Location & Seq

Genomic Coordinates Reverse (-)

19794098 .. 19799177

Gene Structure 5080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g17280.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGTCGCGGGAGAGACCCAAAAGAGGCGCACTGCCTCCCGCCCAAGAGAATATTGAGAAATTAGAGAAAGTTGTAGAGGAAGGTAATTACTATGGAGCTCAACAAATGTACAAATCTATTAGTGCAAGATATGTATCTGCTCAGAGGTTTTCTGAGGCTGTGGATATCCTTCAGTCCGGCGCATGCAACCAACTGAAACATGGGCAGGTTACTTGTGGTGCTGAGTTGGCTGCTTTGTTTGTGGAAACACTTGTCAAAGGAAGATTCCCTTATGACGATGAAACACTAGGTCGTGTCAGGAAAATTTATAAAGCATTTCCTCGGATACCTGTGCCACAGCAGTTAGGGGATTTAGATGACATGCAACAACTTTCTGAAACACTTGGGGAAGCAAAAACATGTGTTGAGGGCTGCTCATCGTTCCTAAAATCTGCTCTTAAGTGGTCTAAGGAGTTTGGTGCACCCAAGGGTGGAGCTCCAGAAATACATGTCATGTTAGCGAACTACATATATTTTGAATCTCCTGAGGTGGACATGGTTAGAGTGTCGCATCATTTTGTTCGAGGAAACAACCCCAAAGAGTTTGCTTCGACTTTAGTAAATTTTATGGGCAAGTGTTATCCAGGGGAAGATGATTTGGCCATTGCACGAGCGATTTTAATGTATTTGGCAGTTGGTAATCTAAGAGATGCCAATATTCTCGTGGATGAGATAAAGAAGCAAGTGGAGTCTAAGCAGCTTGACTTTCCCAAATCCAATTTGATCCAGTTCATCAATTTTCTTTTGCAAACGTTGCTGAGAGATGCTCTTCCGCTTTTTAATATGTTGAGAGAGAAATACAAATCAAGCTTGGACAGAGAACCAACATTTCATGAGTTGCTGGATGAAATCGCGGAGAAGTTTTATGGAGTACGGCGCAGAAATCCGCTGCAGGGGATGGGAATGTTTGGCGAGATTTTCAAGATGATGGGGGGTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF410

Protein Analysis

327

Amino Acids

36.91

Weight (kDa)

6.57

Isoelectric Point (pI)

44.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009398)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63220 AT5G63220 AT5G63220
fragaria_vesca	FvH4_7g20140 FvH4_7g20140
malus_domestica	MD01G1131100.v1.1 MD07G1179200.v1.1
prunus_persica	Prupe.2G218300_v2.0.a1
pyrus_communis	pycom01g13990 pycom07g17280
rosa_chinensis	RchiOBHm_Chr1g0364111
rosa_laevigata	RLG00000027515
rosa_multiflora	Rmu_co8195120.1_g000001 Rmu_sc0000071.1_g000019 Rmu_sc0011704.1_g000003
rosa_roxburghii	Rroxscaffold_4G00292630
rosa_rugosa	Rorug01G0313600
rosa_samantha	Rh1AG321100 Rh1BG284300 Rh1CG300700 Rh1DG315700
rosa_wichuraiana	Rw1G028470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	309
Acc36I	ACCTGC	1 cut(s)	196
AccII	CGCG	2 cut(s)	7, 893
AciI	CCGC	5 cut(s)	7, 39, 812, 893, 926
AclI	AACGTT	1 cut(s)	791
AclWI	GGATC	1 cut(s)	757
AcoI	YGGCCR	1 cut(s)	639
AcsI	RAATTY	2 cut(s)	303, 601
AcuI	CTGAAG	1 cut(s)	155
AfaI	GTAC	2 cut(s)	110, 912
AfiI	CCNNNNNNNGG	3 cut(s)	23, 470, 932
AflII	CTTAAG	1 cut(s)	437
AflIII	ACRYGT	2 cut(s)	398, 487
AgsI	TTSAA	2 cut(s)	518, 961
AjnI	CCWGG	1 cut(s)	622
AluBI	AGCT	4 cut(s)	98, 476, 739, 849
AluI	AGCT	4 cut(s)	98, 476, 739, 849
Alw21I	GWGCWC	3 cut(s)	100, 463, 478
Alw26I	GTCTC	1 cut(s)	7
Alw44I	GTGCAC	1 cut(s)	459
AlwI	GGATC	1 cut(s)	757
AoxI	GGCC	1 cut(s)	639
ApaLI	GTGCAC	1 cut(s)	459
ApeKI	GCWGC	4 cut(s)	230, 411, 736, 928
ApoI	RAATTY	2 cut(s)	303, 601
AspLEI	GCGC	3 cut(s)	29, 182, 918
AxyI	CCTNAGG	1 cut(s)	525
BaeGI	GKGCMC	1 cut(s)	463
BalI	TGGCCA	1 cut(s)	641
BanII	GRGCYC	2 cut(s)	100, 478
BauI	CACGAG	2 cut(s)	648, 701
Bbv12I	GWGCWC	3 cut(s)	100, 463, 478
BbvI	GCAGC	4 cut(s)	217, 398, 748, 915
BccI	CCATC	2 cut(s)	931, 961
BceAI	ACGGC	1 cut(s)	929
BciT130I	CCWGG	1 cut(s)	624
BciVI	GTATCC	1 cut(s)	318
BcoDI	GTCTC	1 cut(s)	7
BfaI	CTAG	1 cut(s)	287
BfmI	CTRYAG	1 cut(s)	929
BfrI	CTTAAG	1 cut(s)	437
BfuAI	ACCTGC	1 cut(s)	196
BfuI	GTATCC	1 cut(s)	318
BisI	GCNGC	4 cut(s)	231, 412, 737, 929
BlsI	GCNGC	4 cut(s)	232, 413, 738, 930
Bme1390I	CCNGG	1 cut(s)	624
BmrFI	CCNGG	1 cut(s)	624
BmsI	GCATC	3 cut(s)	559, 679, 793
BplI	GAGNNNNNCTC	4 cut(s)	398, 430, 790, 822
BpmI	CTGGAG	1 cut(s)	462
BsaBI	GATNNNNATC	1 cut(s)	133
BsaI	GGTCTC	1 cut(s)	7
BsaJI	CCNNGG	3 cut(s)	320, 465, 623
Bsc4I	CCNNNNNNNGG	3 cut(s)	23, 470, 932
Bse1I	ACTGG	1 cut(s)	766
Bse21I	CCTNAGG	1 cut(s)	525
Bse3DI	GCAATG	1 cut(s)	642
Bse8I	GATNNNNATC	1 cut(s)	133
BseBI	CCWGG	1 cut(s)	624
BseDI	CCNNGG	3 cut(s)	320, 465, 623
BseGI	GGATG	3 cut(s)	712, 889, 942
BseJI	GATNNNNATC	1 cut(s)	133
BseLI	CCNNNNNNNGG	3 cut(s)	23, 470, 932
BseMI	GCAATG	1 cut(s)	642
BseMII	CTCAG	5 cut(s)	144, 155, 213, 516, 788
BseNI	ACTGG	1 cut(s)	766
BseSI	GKGCMC	1 cut(s)	463
BseXI	GCAGC	4 cut(s)	217, 398, 748, 915
Bsh1236I	CGCG	2 cut(s)	7, 893
BshFI	GGCC	1 cut(s)	641
BsiHKAI	GWGCWC	3 cut(s)	100, 463, 478
BsiSI	CCGG	1 cut(s)	177
BslI	CCNNNNNNNGG	3 cut(s)	23, 470, 932
BsmAI	GTCTC	1 cut(s)	7
BsnI	GGCC	1 cut(s)	641
Bso31I	GGTCTC	1 cut(s)	7
Bsp1286I	GDGCHC	3 cut(s)	100, 463, 478
Bsp1407I	TGTACA	1 cut(s)	108
Bsp143I	GATC	1 cut(s)	762
BspACI	CCGC	5 cut(s)	7, 39, 812, 893, 926
BspANI	GGCC	1 cut(s)	641
BspCNI	CTCAG	5 cut(s)	145, 154, 214, 517, 789
BspFNI	CGCG	2 cut(s)	7, 893
BspHI	TCATGA	1 cut(s)	871
BspMAI	CTGCAG	1 cut(s)	933
BspMI	ACCTGC	1 cut(s)	196
BspPI	GGATC	1 cut(s)	757
BspQI	GCTCTTC	1 cut(s)	813
BspTI	CTTAAG	1 cut(s)	437
BspTNI	GGTCTC	1 cut(s)	7
BsrDI	GCAATG	1 cut(s)	642
BsrGI	TGTACA	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	766
BssECI	CCNNGG	3 cut(s)	320, 465, 623
BssMI	GATC	1 cut(s)	762
BssSI	CACGAG	2 cut(s)	648, 701
BssT1I	CCWWGG	1 cut(s)	465
Bst2BI	CACGAG	2 cut(s)	648, 701
Bst2UI	CCWGG	1 cut(s)	624
Bst6I	CTCTTC	1 cut(s)	813
BstAFI	CTTAAG	1 cut(s)	437
BstAPI	GCANNNNNTGC	1 cut(s)	793
BstAUI	TGTACA	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	184
BstDEI	CTNAG	8 cut(s)	141, 153, 222, 447, 525, 683, 732, 797
BstF5I	GGATG	3 cut(s)	712, 889, 942
BstFNI	CGCG	2 cut(s)	7, 893
BstHHI	GCGC	3 cut(s)	29, 182, 918
BstKTI	GATC	1 cut(s)	765
BstMAI	GTCTC	1 cut(s)	7
BstMBI	GATC	1 cut(s)	762
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 793
BstNI	CCWGG	1 cut(s)	624
BstNSI	RCATGY	4 cut(s)	186, 364, 402, 491
BstSCI	CCNGG	1 cut(s)	622
BstSFI	CTRYAG	1 cut(s)	929
BstSLI	GKGCMC	1 cut(s)	463
BstUI	CGCG	2 cut(s)	7, 893
BstV1I	GCAGC	4 cut(s)	217, 398, 748, 915
Bsu36I	CCTNAGG	1 cut(s)	525
BsuI	GTATCC	1 cut(s)	318
BsuRI	GGCC	1 cut(s)	641
BtsCI	GGATG	3 cut(s)	712, 889, 942
BtsI	GCAGTG	1 cut(s)	29
BtsIMutI	CAGTG	1 cut(s)	29
BveI	ACCTGC	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	184
CciI	TCATGA	1 cut(s)	871
CfoI	GCGC	3 cut(s)	29, 182, 918
Csp6I	GTAC	2 cut(s)	109, 911
CviAII	CATG	8 cut(s)	183, 200, 361, 399, 488, 493, 535, 872
CviJI	RGCY	8 cut(s)	98, 158, 230, 411, 476, 641, 739, 849
CviKI_1	RGCY	8 cut(s)	98, 158, 230, 411, 476, 641, 739, 849
CviQI	GTAC	2 cut(s)	109, 911
DdeI	CTNAG	8 cut(s)	141, 153, 222, 447, 525, 683, 732, 797
DpnI	GATC	1 cut(s)	764
DpnII	GATC	1 cut(s)	762
EaeI	YGGCCR	1 cut(s)	639
Eam1104I	CTCTTC	1 cut(s)	813
EarI	CTCTTC	1 cut(s)	813
Ecl136II	GAGCTC	2 cut(s)	98, 476
Eco130I	CCWWGG	1 cut(s)	465
Eco24I	GRGCYC	2 cut(s)	100, 478
Eco31I	GGTCTC	1 cut(s)	7
Eco32I	GATATC	1 cut(s)	166
Eco53kI	GAGCTC	2 cut(s)	98, 476
Eco57I	CTGAAG	1 cut(s)	155
Eco81I	CCTNAGG	1 cut(s)	525
EcoICRI	GAGCTC	2 cut(s)	98, 476
EcoRII	CCWGG	1 cut(s)	622
EcoRV	GATATC	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	465
EcoT38I	GRGCYC	2 cut(s)	100, 478
ErhI	CCWWGG	1 cut(s)	465
FaeI	CATG	8 cut(s)	186, 203, 364, 402, 491, 496, 538, 875
FalI	AAGNNNNNCTT	2 cut(s)	253, 285
FatI	CATG	8 cut(s)	182, 199, 360, 398, 487, 492, 534, 871
FauI	CCCGC	1 cut(s)	46
Fnu4HI	GCNGC	4 cut(s)	231, 412, 737, 929
FokI	GGATG	3 cut(s)	719, 896, 949
FriOI	GRGCYC	2 cut(s)	100, 478
Fsp4HI	GCNGC	4 cut(s)	231, 412, 737, 929
FspBI	CTAG	1 cut(s)	287
GlaI	GCGC	3 cut(s)	28, 181, 917
GluI	GCNGC	4 cut(s)	231, 412, 737, 929
GsuI	CTGGAG	1 cut(s)	462
HaeIII	GGCC	1 cut(s)	641
HapII	CCGG	1 cut(s)	177
HhaI	GCGC	3 cut(s)	29, 182, 918
Hin1II	CATG	8 cut(s)	186, 203, 364, 402, 491, 496, 538, 875
Hin6I	GCGC	3 cut(s)	27, 180, 916
HinP1I	GCGC	3 cut(s)	27, 180, 916
HindIII	AAGCTT	1 cut(s)	847
HinfI	GANTC	3 cut(s)	264, 518, 728
HpaII	CCGG	1 cut(s)	177
Hpy166II	GTNNAC	2 cut(s)	461, 532
Hpy188I	TCNGA	4 cut(s)	144, 154, 324, 376
Hpy188III	TCNNGA	5 cut(s)	298, 479, 524, 872, 961
Hpy8I	GTNNAC	2 cut(s)	461, 532
HpyAV	CCTTC	2 cut(s)	74, 179
HpyCH4IV	ACGT	1 cut(s)	791
HpyCH4V	TGCA	7 cut(s)	125, 186, 364, 461, 647, 787, 931
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 793
HpyF3I	CTNAG	8 cut(s)	141, 153, 222, 447, 525, 683, 732, 797
HpySE526I	ACGT	1 cut(s)	791
Hsp92II	CATG	8 cut(s)	186, 203, 364, 402, 491, 496, 538, 875
HspAI	GCGC	3 cut(s)	27, 180, 916
Kzo9I	GATC	1 cut(s)	762
LguI	GCTCTTC	1 cut(s)	813
LmnI	GCTCC	3 cut(s)	95, 473, 481
Lsp1109I	GCAGC	4 cut(s)	217, 398, 748, 915
LweI	GCATC	3 cut(s)	559, 679, 793
MaeI	CTAG	1 cut(s)	287
MaeII	ACGT	1 cut(s)	791
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	1 cut(s)	764
MboI	GATC	1 cut(s)	762
MboII	GAAGA	3 cut(s)	273, 641, 800
MhlI	GDGCHC	3 cut(s)	100, 463, 478
MlsI	TGGCCA	1 cut(s)	641
MluCI	AATT	6 cut(s)	59, 85, 303, 601, 757, 775
MluNI	TGGCCA	1 cut(s)	641
MlyI	GAGTC	1 cut(s)	737
MnlI	CCTC	9 cut(s)	17, 45, 70, 138, 148, 330, 400, 520, 557
Mox20I	TGGCCA	1 cut(s)	641
MscI	TGGCCA	1 cut(s)	641
MseI	TTAA	3 cut(s)	438, 659, 819
Msp20I	TGGCCA	1 cut(s)	641
MspA1I	CMGCKG	1 cut(s)	928
MspCI	CTTAAG	1 cut(s)	437
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	1 cut(s)	624
MvaI	CCWGG	1 cut(s)	624
MvnI	CGCG	2 cut(s)	7, 893
MwoI	GCNNNNNNNGC	2 cut(s)	227, 793
NdeII	GATC	1 cut(s)	762
NlaIII	CATG	8 cut(s)	186, 203, 364, 402, 491, 496, 538, 875
NspI	RCATGY	4 cut(s)	186, 364, 402, 491
PaeI	GCATGC	1 cut(s)	186
PagI	TCATGA	1 cut(s)	871
PciI	ACATGT	2 cut(s)	398, 487
PciSI	GCTCTTC	1 cut(s)	813
PfeI	GAWTC	2 cut(s)	264, 518
PkrI	GCNGC	4 cut(s)	232, 413, 738, 930
PleI	GAGTC	1 cut(s)	736
PpsI	GAGTC	1 cut(s)	736
PscI	ACATGT	2 cut(s)	398, 487
PsiI	TTATAA	1 cut(s)	309
Psp124BI	GAGCTC	2 cut(s)	100, 478
Psp1406I	AACGTT	1 cut(s)	791
Psp6I	CCWGG	1 cut(s)	622
PspGI	CCWGG	1 cut(s)	622
PstI	CTGCAG	1 cut(s)	933
RsaI	GTAC	2 cut(s)	110, 912
RsaNI	GTAC	2 cut(s)	109, 911
SacI	GAGCTC	2 cut(s)	100, 478
SapI	GCTCTTC	1 cut(s)	813
SaqAI	TTAA	3 cut(s)	438, 659, 819
SatI	GCNGC	4 cut(s)	231, 412, 737, 929
Sau3AI	GATC	1 cut(s)	762
SchI	GAGTC	1 cut(s)	737
ScrFI	CCNGG	1 cut(s)	624
SduI	GDGCHC	3 cut(s)	100, 463, 478
SfaNI	GCATC	3 cut(s)	559, 679, 793
SfcI	CTRYAG	1 cut(s)	929
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
SphI	GCATGC	1 cut(s)	186
Sse9I	AATT	6 cut(s)	59, 85, 303, 601, 757, 775
SsiI	CCGC	5 cut(s)	7, 39, 812, 893, 926
SspI	AATATT	2 cut(s)	52, 697
SspMI	CTAG	1 cut(s)	287
SstI	GAGCTC	2 cut(s)	100, 478
StyD4I	CCNGG	1 cut(s)	622
StyI	CCWWGG	1 cut(s)	465
TaiI	ACGT	1 cut(s)	794
TaqI	TCGA	2 cut(s)	562, 590
TasI	AATT	6 cut(s)	59, 85, 303, 601, 757, 775
TatI	WGTACW	1 cut(s)	108
TfiI	GAWTC	2 cut(s)	264, 518
Tru1I	TTAA	3 cut(s)	438, 659, 819
Tru9I	TTAA	3 cut(s)	438, 659, 819
TscAI	CASTG	1 cut(s)	36
TseI	GCWGC	4 cut(s)	230, 411, 736, 928
TspDTI	ATGAA	4 cut(s)	294, 760, 860, 900
TspRI	CASTG	1 cut(s)	36
Vha464I	CTTAAG	1 cut(s)	437
VneI	GTGCAC	1 cut(s)	459
XapI	RAATTY	2 cut(s)	303, 601
XceI	RCATGY	4 cut(s)	186, 364, 402, 491
XcmI	CCANNNNNNNNNTGG	2 cut(s)	197, 700
XspI	CTAG	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.