Rh1BG284300

Golgi to ER traffic protein 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0009398
Physical Location & Seq
Reverse (-)
42061601 .. 42066170
4570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG284300.1

Sequence Viewer

Length: 795 bp
ATGTGTGAAAACAAATTTCAGGTTACGTGTGGGGCAGAGTTAGCTGCTTTGTTTGTGGATACGCTTGTCAAAGCGAGATGCCCTTATGACGATGAAACCCTCGTTCGTGTCAGGACAATTTATAAGCAGTTTCCTAAGATACCTGTGCCACAACAGTTGGGGGATGATGATGACGTGCAACGACTTTCTGAAACACTTGGGACAGCAAAAACATGTGTTGAAGGATGCTCATCATTCCTAAAAGCTGCTATCAAGTGGTCTGCGGAGTTTGGTGCACCTAGGGGTGGGGCTCCAGAAATACATGTTATGCTAGCTAACTATATGTACTTTGAATCTCCTGAGGTGGACATGGTTAGAGTTGCACAGCATTTTGTCAGAGGAAACAACCCAAAAGAATTTGCTTCTACTTTAGTACATTTCATGGGCAAGTGCTATCCAGGGGAAGATGATGTGGCCATTGCAAGGGCAATTTTAATGTATTTGGCTTTAGGTAACCTGAGAGATGCCAATGCTCTCATGGATGAGATAAAAAAGCAAGTAGAAGCTAAGCAGCTTGAATTTCCTAAATCCGATTTGATGCAGTTCATTAATTTTCTTTTGGAAACGATGCTGAGAGATGCTTTTCCTCTTTTTAATATGTTGAGATCGAATTTCAAATCAACCTTAGACAGAGAGCCTAGTTTTCACGAGTTGCTAGATGAAATTGCAGAGAAGTTTTATGGAGTAAGGCGCAGAAATCCTCTACAAGGGATGGGAATGTTTGGGGAGATCTTCAAGATGATGGGAGGTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF410

Protein Analysis

264

Amino Acids

29.94

Weight (kDa)

5.4

Isoelectric Point (pI)

37.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GET4 PF04190 7 - 258 4.2e-58 Golgi to ER traffic protein 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 123
AciI CCGC 1 cut(s) 263
AcoI YGGCCR 1 cut(s) 453
AcsI RAATTY 4 cut(s) 14, 395, 557, 649
AfaI GTAC 2 cut(s) 326, 414
AfiI CCNNNNNNNGG 3 cut(s) 284, 462, 746
AflIII ACRYGT 3 cut(s) 26, 212, 301
AgsI TTSAA 5 cut(s) 221, 332, 557, 655, 775
AjiI CACGTC 1 cut(s) 175
AjnI CCWGG 1 cut(s) 436
AluBI AGCT 5 cut(s) 44, 245, 314, 545, 553
AluI AGCT 5 cut(s) 44, 245, 314, 545, 553
Alw21I GWGCWC 1 cut(s) 277
Alw44I GTGCAC 1 cut(s) 273
AoxI GGCC 1 cut(s) 453
ApaLI GTGCAC 1 cut(s) 273
ApeKI GCWGC 3 cut(s) 44, 245, 550
ApoI RAATTY 4 cut(s) 14, 395, 557, 649
AseI ATTAAT 1 cut(s) 588
AspA2I CCTAGG 1 cut(s) 278
AspLEI GCGC 1 cut(s) 732
AsuNHI GCTAGC 1 cut(s) 310
AvrII CCTAGG 1 cut(s) 278
AxyI CCTNAGG 1 cut(s) 339
BaeGI GKGCMC 1 cut(s) 277
BaeI ACNNNNGTAYC 2 cut(s) 51, 84
BalI TGGCCA 1 cut(s) 455
BanII GRGCYC 1 cut(s) 292
BauI CACGAG 1 cut(s) 686
Bbv12I GWGCWC 1 cut(s) 277
BbvI GCAGC 3 cut(s) 31, 232, 562
BccI CCATC 2 cut(s) 745, 775
BciT130I CCWGG 1 cut(s) 438
BciVI GTATCC 1 cut(s) 52
BfaI CTAG 4 cut(s) 279, 311, 678, 695
BfuI GTATCC 1 cut(s) 52
BglII AGATCT 1 cut(s) 768
BisI GCNGC 3 cut(s) 45, 246, 551
BlnI CCTAGG 1 cut(s) 278
BlpI GCTNAGC 1 cut(s) 546
BlsI GCNGC 3 cut(s) 46, 247, 552
Bme1390I CCNGG 1 cut(s) 438
BmgBI CACGTC 1 cut(s) 175
BmiI GGNNCC 1 cut(s) 291
BmrFI CCNGG 1 cut(s) 438
BmsI GCATC 6 cut(s) 68, 215, 493, 567, 597, 607
BmtI GCTAGC 1 cut(s) 314
BpmI CTGGAG 1 cut(s) 276
Bpu1102I GCTNAGC 1 cut(s) 546
BsaAI YACGTR 1 cut(s) 27
BsaBI GATNNNNATC 1 cut(s) 229
BsaJI CCNNGG 2 cut(s) 278, 437
Bsc4I CCNNNNNNNGG 3 cut(s) 284, 462, 746
Bse21I CCTNAGG 1 cut(s) 339
Bse3DI GCAATG 1 cut(s) 456
Bse8I GATNNNNATC 1 cut(s) 229
BseBI CCWGG 1 cut(s) 438
BseDI CCNNGG 2 cut(s) 278, 437
BseGI GGATG 4 cut(s) 169, 230, 526, 756
BseJI GATNNNNATC 1 cut(s) 229
BseLI CCNNNNNNNGG 3 cut(s) 284, 462, 746
BseMI GCAATG 1 cut(s) 456
BseMII CTCAG 3 cut(s) 330, 488, 602
BseSI GKGCMC 1 cut(s) 277
BseXI GCAGC 3 cut(s) 31, 232, 562
BshFI GGCC 1 cut(s) 455
BsiHKAI GWGCWC 1 cut(s) 277
BslFI GGGAC 1 cut(s) 214
BslI CCNNNNNNNGG 3 cut(s) 284, 462, 746
BsmFI GGGAC 1 cut(s) 214
BsnI GGCC 1 cut(s) 455
Bsp1286I GDGCHC 2 cut(s) 277, 292
Bsp143I GATC 2 cut(s) 644, 768
Bsp1720I GCTNAGC 1 cut(s) 546
BspACI CCGC 1 cut(s) 263
BspANI GGCC 1 cut(s) 455
BspCNI CTCAG 3 cut(s) 331, 489, 603
BspLI GGNNCC 1 cut(s) 291
BspOI GCTAGC 1 cut(s) 314
BsrDI GCAATG 1 cut(s) 456
BssECI CCNNGG 2 cut(s) 278, 437
BssMI GATC 2 cut(s) 644, 768
BssSI CACGAG 1 cut(s) 686
BssT1I CCWWGG 1 cut(s) 278
Bst2BI CACGAG 1 cut(s) 686
Bst2UI CCWGG 1 cut(s) 438
Bst4CI ACNGT 1 cut(s) 156
BstBAI YACGTR 1 cut(s) 27
BstC8I GCNNGC 1 cut(s) 312
BstDEI CTNAG 6 cut(s) 135, 339, 497, 546, 611, 664
BstEII GGTNACC 1 cut(s) 491
BstENI CCTNNNNNAGG 1 cut(s) 744
BstF5I GGATG 4 cut(s) 169, 230, 526, 756
BstHHI GCGC 1 cut(s) 732
BstKTI GATC 2 cut(s) 647, 771
BstMBI GATC 2 cut(s) 644, 768
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNI CCWGG 1 cut(s) 438
BstNSI RCATGY 2 cut(s) 216, 305
BstPI GGTNACC 1 cut(s) 491
BstSCI CCNGG 1 cut(s) 436
BstSLI GKGCMC 1 cut(s) 277
BstV1I GCAGC 3 cut(s) 31, 232, 562
BstX2I RGATCY 1 cut(s) 768
BstYI RGATCY 1 cut(s) 768
Bsu36I CCTNAGG 1 cut(s) 339
BsuI GTATCC 1 cut(s) 52
BsuRI GGCC 1 cut(s) 455
BtrI CACGTC 1 cut(s) 175
BtsCI GGATG 4 cut(s) 169, 230, 526, 756
Cac8I GCNNGC 1 cut(s) 312
CfoI GCGC 1 cut(s) 732
Csp6I GTAC 2 cut(s) 325, 413
CspCI CAANNNNNGTGG 2 cut(s) 138, 173
CviAII CATG 5 cut(s) 213, 302, 349, 421, 517
CviJI RGCY 9 cut(s) 44, 245, 290, 314, 455, 485, 545, 553, 676
CviKI_1 RGCY 9 cut(s) 44, 245, 290, 314, 455, 485, 545, 553, 676
CviQI GTAC 2 cut(s) 325, 413
DdeI CTNAG 6 cut(s) 135, 339, 497, 546, 611, 664
DpnI GATC 2 cut(s) 646, 770
DpnII GATC 2 cut(s) 644, 768
EaeI YGGCCR 1 cut(s) 453
Eco130I CCWWGG 1 cut(s) 278
Eco24I GRGCYC 1 cut(s) 292
Eco81I CCTNAGG 1 cut(s) 339
Eco91I GGTNACC 1 cut(s) 491
EcoNI CCTNNNNNAGG 1 cut(s) 744
EcoO65I GGTNACC 1 cut(s) 491
EcoRII CCWGG 1 cut(s) 436
EcoT14I CCWWGG 1 cut(s) 278
EcoT38I GRGCYC 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 278
FaeI CATG 5 cut(s) 216, 305, 352, 424, 520
FaqI GGGAC 1 cut(s) 214
FatI CATG 5 cut(s) 212, 301, 348, 420, 516
Fnu4HI GCNGC 3 cut(s) 45, 246, 551
FokI GGATG 4 cut(s) 176, 237, 533, 763
FriOI GRGCYC 1 cut(s) 292
Fsp4HI GCNGC 3 cut(s) 45, 246, 551
FspBI CTAG 4 cut(s) 279, 311, 678, 695
GlaI GCGC 1 cut(s) 731
GluI GCNGC 3 cut(s) 45, 246, 551
GsuI CTGGAG 1 cut(s) 276
HaeIII GGCC 1 cut(s) 455
HhaI GCGC 1 cut(s) 732
Hin1II CATG 5 cut(s) 216, 305, 352, 424, 520
Hin6I GCGC 1 cut(s) 730
HinP1I GCGC 1 cut(s) 730
HinfI GANTC 1 cut(s) 332
Hpy166II GTNNAC 2 cut(s) 275, 346
Hpy188I TCNGA 3 cut(s) 190, 377, 571
Hpy188III TCNNGA 5 cut(s) 112, 293, 338, 686, 775
Hpy8I GTNNAC 2 cut(s) 275, 346
HpyAV CCTTC 1 cut(s) 215
HpyCH4III ACNGT 1 cut(s) 156
HpyCH4IV ACGT 2 cut(s) 26, 174
HpyCH4V TGCA 6 cut(s) 178, 275, 362, 461, 580, 707
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 6 cut(s) 135, 339, 497, 546, 611, 664
HpySE526I ACGT 2 cut(s) 26, 174
Hsp92II CATG 5 cut(s) 216, 305, 352, 424, 520
HspAI GCGC 1 cut(s) 730
Kzo9I GATC 2 cut(s) 644, 768
LmnI GCTCC 1 cut(s) 295
LpnPI CCDG 8 cut(s) 5, 97, 156, 306, 351, 423, 450, 509
Lsp1109I GCAGC 3 cut(s) 31, 232, 562
LweI GCATC 6 cut(s) 68, 215, 493, 567, 597, 607
MaeI CTAG 4 cut(s) 279, 311, 678, 695
MaeII ACGT 2 cut(s) 26, 174
MaeIII GTNAC 2 cut(s) 22, 491
MalI GATC 2 cut(s) 646, 770
MboI GATC 2 cut(s) 644, 768
MboII GAAGA 2 cut(s) 455, 763
MflI RGATCY 1 cut(s) 768
MhlI GDGCHC 2 cut(s) 277, 292
MlsI TGGCCA 1 cut(s) 455
MluCI AATT 8 cut(s) 14, 117, 395, 468, 557, 589, 649, 702
MluNI TGGCCA 1 cut(s) 455
MnlI CCTC 6 cut(s) 110, 334, 371, 636, 750, 779
Mox20I TGGCCA 1 cut(s) 455
MscI TGGCCA 1 cut(s) 455
MseI TTAA 3 cut(s) 473, 588, 633
Msp20I TGGCCA 1 cut(s) 455
MspR9I CCNGG 1 cut(s) 438
MvaI CCWGG 1 cut(s) 438
MwoI GCNNNNNNNGC 1 cut(s) 41
NdeII GATC 2 cut(s) 644, 768
NheI GCTAGC 1 cut(s) 310
NlaIII CATG 5 cut(s) 216, 305, 352, 424, 520
NlaIV GGNNCC 1 cut(s) 291
NspI RCATGY 2 cut(s) 216, 305
PciI ACATGT 2 cut(s) 212, 301
PfeI GAWTC 1 cut(s) 332
PkrI GCNGC 3 cut(s) 46, 247, 552
Ppu21I YACGTR 1 cut(s) 27
PscI ACATGT 2 cut(s) 212, 301
PshBI ATTAAT 1 cut(s) 588
PsiI TTATAA 1 cut(s) 123
Psp6I CCWGG 1 cut(s) 436
PspEI GGTNACC 1 cut(s) 491
PspGI CCWGG 1 cut(s) 436
PspN4I GGNNCC 1 cut(s) 291
PsuI RGATCY 1 cut(s) 768
RsaI GTAC 2 cut(s) 326, 414
RsaNI GTAC 2 cut(s) 325, 413
SaqAI TTAA 3 cut(s) 473, 588, 633
SatI GCNGC 3 cut(s) 45, 246, 551
Sau3AI GATC 2 cut(s) 644, 768
ScrFI CCNGG 1 cut(s) 438
SduI GDGCHC 2 cut(s) 277, 292
SfaNI GCATC 6 cut(s) 68, 215, 493, 567, 597, 607
Sse9I AATT 8 cut(s) 14, 117, 395, 468, 557, 589, 649, 702
SsiI CCGC 1 cut(s) 263
SspMI CTAG 4 cut(s) 279, 311, 678, 695
StyD4I CCNGG 1 cut(s) 436
StyI CCWWGG 1 cut(s) 278
TaaI ACNGT 1 cut(s) 156
TaiI ACGT 2 cut(s) 29, 177
TaqI TCGA 1 cut(s) 647
TasI AATT 8 cut(s) 14, 117, 395, 468, 557, 589, 649, 702
TatI WGTACW 2 cut(s) 324, 412
TfiI GAWTC 1 cut(s) 332
Tru1I TTAA 3 cut(s) 473, 588, 633
Tru9I TTAA 3 cut(s) 473, 588, 633
TseI GCWGC 3 cut(s) 44, 245, 550
TspDTI ATGAA 4 cut(s) 108, 409, 574, 714
VneI GTGCAC 1 cut(s) 273
VspI ATTAAT 1 cut(s) 588
XagI CCTNNNNNAGG 1 cut(s) 744
XapI RAATTY 4 cut(s) 14, 395, 557, 649
XceI RCATGY 2 cut(s) 216, 305
XcmI CCANNNNNNNNNTGG 1 cut(s) 514
XmaJI CCTAGG 1 cut(s) 278
XspI CTAG 4 cut(s) 279, 311, 678, 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.