Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000071.1

Orthogroup ID

OG0009398

Physical Location & Seq

Genomic Coordinates Forward (+)

73372 .. 75844

Gene Structure 2473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000071.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

atgtcgaaggagagagccaaaagaggcacactgcctccagcccaagagcaaattgagaaatttgagaaagttgtagaggaaggtaactactatggagctcagcagctgtacaaatctattagtgcgagatatgtggctgctcagaggtatactgaagctttagatattcttcagtcgggtgcatgcatccagttgaaacaagggcaggttacgtgtggggcagagttagctgctttgtttgtggatacacttgtcaaagcgagatgcccttatgacgatgaagccctcgttcgtgtcaggacaatttataaacagtttcctaagatacctgtgccacaacagttgggggatgatgatgacgtgcaacgactttctgaaacacttgggacagcaaaaacatgtgttgaaggatgctcatcattcctaaaagctgctatcaagtggtctgcggagtttggtgcacctaggggtggggctccagaaatacatgttatgctagctaactatatgtactttgaatcttctgaggtggacatggttagagttgcacagcattttgtcagaggaaacaacccaaaagaatttgcttctactttagtagatttcatgggcaagtgctatccaggggaagatgatgtggccattgcaagggcaattttaatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF410

Protein Analysis

221

Amino Acids

24.53

Weight (kDa)

5.56

Isoelectric Point (pI)

38.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009398)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63220 AT5G63220 AT5G63220
fragaria_vesca	FvH4_7g20140 FvH4_7g20140
malus_domestica	MD01G1131100.v1.1 MD07G1179200.v1.1
prunus_persica	Prupe.2G218300_v2.0.a1
pyrus_communis	pycom01g13990 pycom07g17280
rosa_chinensis	RchiOBHm_Chr1g0364111
rosa_laevigata	RLG00000027515
rosa_multiflora	Rmu_co8195120.1_g000001 Rmu_sc0000071.1_g000019 Rmu_sc0011704.1_g000003
rosa_roxburghii	Rroxscaffold_4G00292630
rosa_rugosa	Rorug01G0313600
rosa_samantha	Rh1AG321100 Rh1BG284300 Rh1CG300700 Rh1DG315700
rosa_wichuraiana	Rw1G028470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	309
Acc36I	ACCTGC	1 cut(s)	196
AccI	GTMKAC	1 cut(s)	149
AciI	CCGC	1 cut(s)	449
AcoI	YGGCCR	1 cut(s)	639
AcsI	RAATTY	2 cut(s)	59, 581
AcuI	CTGAAG	2 cut(s)	155, 174
AfaI	GTAC	2 cut(s)	110, 512
AfiI	CCNNNNNNNGG	2 cut(s)	470, 648
AflIII	ACRYGT	3 cut(s)	212, 398, 487
AgsI	TTSAA	3 cut(s)	196, 407, 518
AjiI	CACGTC	1 cut(s)	361
AjnI	CCWGG	1 cut(s)	622
AluBI	AGCT	6 cut(s)	98, 106, 158, 230, 431, 500
AluI	AGCT	6 cut(s)	98, 106, 158, 230, 431, 500
Alw21I	GWGCWC	2 cut(s)	100, 463
Alw44I	GTGCAC	1 cut(s)	459
AlwNI	CAGNNNCTG	1 cut(s)	106
AoxI	GGCC	1 cut(s)	639
ApaLI	GTGCAC	1 cut(s)	459
ApeKI	GCWGC	4 cut(s)	103, 137, 230, 431
ApoI	RAATTY	2 cut(s)	59, 581
AspA2I	CCTAGG	1 cut(s)	464
AsuNHI	GCTAGC	1 cut(s)	496
AvrII	CCTAGG	1 cut(s)	464
BaeGI	GKGCMC	1 cut(s)	463
BaeI	ACNNNNGTAYC	2 cut(s)	237, 270
BalI	TGGCCA	1 cut(s)	641
BanII	GRGCYC	2 cut(s)	100, 478
Bbv12I	GWGCWC	2 cut(s)	100, 463
BbvI	GCAGC	4 cut(s)	115, 124, 217, 418
BciT130I	CCWGG	1 cut(s)	624
BciVI	GTATCC	1 cut(s)	238
BfaI	CTAG	2 cut(s)	465, 497
BfuAI	ACCTGC	1 cut(s)	196
BfuI	GTATCC	1 cut(s)	238
BisI	GCNGC	4 cut(s)	104, 138, 231, 432
BlnI	CCTAGG	1 cut(s)	464
BlpI	GCTNAGC	1 cut(s)	99
BlsI	GCNGC	4 cut(s)	105, 139, 232, 433
Bme1390I	CCNGG	1 cut(s)	624
BmgBI	CACGTC	1 cut(s)	361
BmiI	GGNNCC	1 cut(s)	477
BmrFI	CCNGG	1 cut(s)	624
BmsI	GCATC	3 cut(s)	195, 254, 401
BmtI	GCTAGC	1 cut(s)	500
BpmI	CTGGAG	2 cut(s)	21, 462
Bpu1102I	GCTNAGC	1 cut(s)	99
BsaAI	YACGTR	1 cut(s)	213
BsaBI	GATNNNNATC	1 cut(s)	415
BsaJI	CCNNGG	2 cut(s)	464, 623
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bsc4I	CCNNNNNNNGG	2 cut(s)	470, 648
Bse1I	ACTGG	1 cut(s)	190
Bse3DI	GCAATG	1 cut(s)	642
Bse8I	GATNNNNATC	1 cut(s)	415
BseBI	CCWGG	1 cut(s)	624
BseDI	CCNNGG	2 cut(s)	464, 623
BseGI	GGATG	3 cut(s)	186, 355, 416
BseJI	GATNNNNATC	1 cut(s)	415
BseLI	CCNNNNNNNGG	2 cut(s)	470, 648
BseMI	GCAATG	1 cut(s)	642
BseMII	CTCAG	3 cut(s)	113, 155, 516
BseNI	ACTGG	1 cut(s)	190
BseSI	GKGCMC	1 cut(s)	463
BseXI	GCAGC	4 cut(s)	115, 124, 217, 418
BshFI	GGCC	1 cut(s)	641
BsiHKAI	GWGCWC	2 cut(s)	100, 463
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	2 cut(s)	470, 648
BsmFI	GGGAC	1 cut(s)	400
BsnI	GGCC	1 cut(s)	641
Bsp1286I	GDGCHC	3 cut(s)	100, 463, 478
Bsp1407I	TGTACA	1 cut(s)	108
Bsp1720I	GCTNAGC	1 cut(s)	99
BspACI	CCGC	1 cut(s)	449
BspANI	GGCC	1 cut(s)	641
BspCNI	CTCAG	3 cut(s)	112, 154, 517
BspLI	GGNNCC	1 cut(s)	477
BspMI	ACCTGC	1 cut(s)	196
BspOI	GCTAGC	1 cut(s)	500
BsrDI	GCAATG	1 cut(s)	642
BsrGI	TGTACA	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	2 cut(s)	464, 623
BssNAI	GTATAC	1 cut(s)	150
BssT1I	CCWWGG	1 cut(s)	464
Bst1107I	GTATAC	1 cut(s)	150
Bst2UI	CCWGG	1 cut(s)	624
Bst4CI	ACNGT	2 cut(s)	315, 342
BstAUI	TGTACA	1 cut(s)	108
BstBAI	YACGTR	1 cut(s)	213
BstC8I	GCNNGC	2 cut(s)	184, 498
BstDEI	CTNAG	4 cut(s)	99, 141, 321, 525
BstF5I	GGATG	3 cut(s)	186, 355, 416
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstNI	CCWGG	1 cut(s)	624
BstNSI	RCATGY	3 cut(s)	186, 402, 491
BstSCI	CCNGG	1 cut(s)	622
BstSLI	GKGCMC	1 cut(s)	463
BstV1I	GCAGC	4 cut(s)	115, 124, 217, 418
BstZ17I	GTATAC	1 cut(s)	150
BsuI	GTATCC	1 cut(s)	238
BsuRI	GGCC	1 cut(s)	641
BtrI	CACGTC	1 cut(s)	361
BtsCI	GGATG	3 cut(s)	186, 355, 416
BtsI	GCAGTG	1 cut(s)	29
BtsIMutI	CAGTG	1 cut(s)	29
BveI	ACCTGC	1 cut(s)	196
Cac8I	GCNNGC	2 cut(s)	184, 498
CaiI	CAGNNNCTG	1 cut(s)	106
Csp6I	GTAC	2 cut(s)	109, 511
CspCI	CAANNNNNGTGG	2 cut(s)	324, 359
CviAII	CATG	5 cut(s)	183, 399, 488, 535, 607
CviQI	GTAC	2 cut(s)	109, 511
DdeI	CTNAG	4 cut(s)	99, 141, 321, 525
EaeI	YGGCCR	1 cut(s)	639
Ecl136II	GAGCTC	1 cut(s)	98
Eco130I	CCWWGG	1 cut(s)	464
Eco24I	GRGCYC	2 cut(s)	100, 478
Eco53kI	GAGCTC	1 cut(s)	98
Eco57I	CTGAAG	2 cut(s)	155, 174
EcoICRI	GAGCTC	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	622
EcoT14I	CCWWGG	1 cut(s)	464
EcoT22I	ATGCAT	1 cut(s)	188
EcoT38I	GRGCYC	2 cut(s)	100, 478
ErhI	CCWWGG	1 cut(s)	464
FaeI	CATG	5 cut(s)	186, 402, 491, 538, 610
FaqI	GGGAC	1 cut(s)	400
FatI	CATG	5 cut(s)	182, 398, 487, 534, 606
FblI	GTMKAC	1 cut(s)	149
Fnu4HI	GCNGC	4 cut(s)	104, 138, 231, 432
FokI	GGATG	3 cut(s)	173, 362, 423
FriOI	GRGCYC	2 cut(s)	100, 478
Fsp4HI	GCNGC	4 cut(s)	104, 138, 231, 432
FspBI	CTAG	2 cut(s)	465, 497
GluI	GCNGC	4 cut(s)	104, 138, 231, 432
GsuI	CTGGAG	2 cut(s)	21, 462
HaeIII	GGCC	1 cut(s)	641
Hin1II	CATG	5 cut(s)	186, 402, 491, 538, 610
HindIII	AAGCTT	1 cut(s)	156
HinfI	GANTC	1 cut(s)	518
Hpy166II	GTNNAC	3 cut(s)	150, 461, 532
Hpy188I	TCNGA	4 cut(s)	144, 376, 526, 563
Hpy188III	TCNNGA	2 cut(s)	298, 479
Hpy8I	GTNNAC	3 cut(s)	150, 461, 532
HpyAV	CCTTC	2 cut(s)	74, 401
HpyCH4III	ACNGT	2 cut(s)	315, 342
HpyCH4IV	ACGT	2 cut(s)	212, 360
HpyCH4V	TGCA	6 cut(s)	182, 186, 364, 461, 548, 647
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	4 cut(s)	99, 141, 321, 525
HpySE526I	ACGT	2 cut(s)	212, 360
Hsp92II	CATG	5 cut(s)	186, 402, 491, 538, 610
LmnI	GCTCC	2 cut(s)	95, 481
LpnPI	CCDG	8 cut(s)	51, 191, 203, 283, 342, 492, 609, 636
Lsp1109I	GCAGC	4 cut(s)	115, 124, 217, 418
LweI	GCATC	3 cut(s)	195, 254, 401
MaeI	CTAG	2 cut(s)	465, 497
MaeII	ACGT	2 cut(s)	212, 360
MaeIII	GTNAC	2 cut(s)	83, 208
MboII	GAAGA	3 cut(s)	161, 513, 641
MhlI	GDGCHC	3 cut(s)	100, 463, 478
MlsI	TGGCCA	1 cut(s)	641
MluCI	AATT	5 cut(s)	51, 59, 303, 581, 654
MluNI	TGGCCA	1 cut(s)	641
MnlI	CCTC	7 cut(s)	17, 45, 70, 138, 296, 520, 557
Mox20I	TGGCCA	1 cut(s)	641
Mph1103I	ATGCAT	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	641
MseI	TTAA	1 cut(s)	659
Msp20I	TGGCCA	1 cut(s)	641
MspA1I	CMGCKG	1 cut(s)	106
MspR9I	CCNGG	1 cut(s)	624
MvaI	CCWGG	1 cut(s)	624
MwoI	GCNNNNNNNGC	1 cut(s)	227
NheI	GCTAGC	1 cut(s)	496
NlaIII	CATG	5 cut(s)	186, 402, 491, 538, 610
NlaIV	GGNNCC	1 cut(s)	477
NsiI	ATGCAT	1 cut(s)	188
NspI	RCATGY	3 cut(s)	186, 402, 491
PaeI	GCATGC	1 cut(s)	186
PciI	ACATGT	2 cut(s)	398, 487
PfeI	GAWTC	1 cut(s)	518
PkrI	GCNGC	4 cut(s)	105, 139, 232, 433
Ppu21I	YACGTR	1 cut(s)	213
PscI	ACATGT	2 cut(s)	398, 487
PsiI	TTATAA	1 cut(s)	309
Psp124BI	GAGCTC	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	622
PspGI	CCWGG	1 cut(s)	622
PspN4I	GGNNCC	1 cut(s)	477
PstNI	CAGNNNCTG	1 cut(s)	106
PvuII	CAGCTG	1 cut(s)	106
RsaI	GTAC	2 cut(s)	110, 512
RsaNI	GTAC	2 cut(s)	109, 511
SacI	GAGCTC	1 cut(s)	100
SaqAI	TTAA	1 cut(s)	659
SatI	GCNGC	4 cut(s)	104, 138, 231, 432
ScrFI	CCNGG	1 cut(s)	624
SduI	GDGCHC	3 cut(s)	100, 463, 478
SfaNI	GCATC	3 cut(s)	195, 254, 401
SphI	GCATGC	1 cut(s)	186
Sse9I	AATT	5 cut(s)	51, 59, 303, 581, 654
SsiI	CCGC	1 cut(s)	449
SspMI	CTAG	2 cut(s)	465, 497
SstI	GAGCTC	1 cut(s)	100
StyD4I	CCNGG	1 cut(s)	622
StyI	CCWWGG	1 cut(s)	464
TaaI	ACNGT	2 cut(s)	315, 342
TaiI	ACGT	2 cut(s)	215, 363
TaqI	TCGA	1 cut(s)	5
TasI	AATT	5 cut(s)	51, 59, 303, 581, 654
TatI	WGTACW	2 cut(s)	108, 510
TfiI	GAWTC	1 cut(s)	518
Tru1I	TTAA	1 cut(s)	659
Tru9I	TTAA	1 cut(s)	659
TscAI	CASTG	1 cut(s)	36
TseI	GCWGC	4 cut(s)	103, 137, 230, 431
TspDTI	ATGAA	2 cut(s)	294, 595
TspRI	CASTG	1 cut(s)	36
VneI	GTGCAC	1 cut(s)	459
XapI	RAATTY	2 cut(s)	59, 581
XceI	RCATGY	3 cut(s)	186, 402, 491
XmaJI	CCTAGG	1 cut(s)	464
XmiI	GTMKAC	1 cut(s)	149
XspI	CTAG	2 cut(s)	465, 497
Zsp2I	ATGCAT	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.