Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011704.1

Orthogroup ID

OG0009398

Physical Location & Seq

Genomic Coordinates Reverse (-)

13323 .. 18553

Gene Structure 5231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011704.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

atgccgcttagtgtcttctttggcaacgtggttcttgacagctttgagaaggtggcgggtcacagcttccttaaaacacagttaaatacccgttttaaatacccgacccgcccgaatatggcgggtaaacggagcatgtcgaaggagagagccaaaagaggcacactgcctccagcccaagagcaaattgagaaatttgagaaagttgtagaggaaggtaactactatggagctcagcagctgtacaaatctattagcgcgagatatgtggctgctcagaggtatactgaagctttagatattcttcagtcgggtgcatgcatccagttgaaacatgggcaggttacgtgtggggcagagttagctgctttgtttgtggatacacttgtcaaagcgagatgcccttatgacgatgaagccctcgttcgtgtcaggacaatttataaacagtttcctaagatacctgtgccacaacagttgggggatgatgatgacgtgcaacgactttctgaaacacttgggacagcaaaaacatgtgttgaaggatgctcatcattcctaaaagctgctatcaagtggtctgcggagtttggtgcacctaggggtggggctccagaaatacatgttatgctagctaactatatgtactttgaatcttctgaggtggacatggttagagttgcacagcattttgtcagaggaaacaacccaaaagaatttgcttctactttagtagatttcatgggcaagtgctatccaggggaagatgatgtggccattgcaagggcaattttaatgtatttggctttaggtaacctgagagatgccaatgctctcatggatgagataaaaaagcaagtagaagctaagaagcttgaatttcctaaatccgatttgatgcagttcattaattttcttttggaaacgatgctgagagatgcgtttcctctttttaatatgttgagatcgaatttcaaatcaaccttagacagagagcctagttttcacgagttgctagatgaaattgcagagaagttttatggagtaaagtgcagaaatcctctacaagggatgggaatgtttggggagatcttcaagatgatgggaggtgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF410

Protein Analysis

371

Amino Acids

41.81

Weight (kDa)

6.96

Isoelectric Point (pI)

36.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009398)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63220 AT5G63220 AT5G63220
fragaria_vesca	FvH4_7g20140 FvH4_7g20140
malus_domestica	MD01G1131100.v1.1 MD07G1179200.v1.1
prunus_persica	Prupe.2G218300_v2.0.a1
pyrus_communis	pycom01g13990 pycom07g17280
rosa_chinensis	RchiOBHm_Chr1g0364111
rosa_laevigata	RLG00000027515
rosa_multiflora	Rmu_co8195120.1_g000001 Rmu_sc0000071.1_g000019 Rmu_sc0011704.1_g000003
rosa_roxburghii	Rroxscaffold_4G00292630
rosa_rugosa	Rorug01G0313600
rosa_samantha	Rh1AG321100 Rh1BG284300 Rh1CG300700 Rh1DG315700
rosa_wichuraiana	Rw1G028470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	444
Acc36I	ACCTGC	1 cut(s)	331
AccI	GTMKAC	1 cut(s)	284
AccII	CGCG	1 cut(s)	260
AciI	CCGC	5 cut(s)	5, 56, 109, 122, 584
AcoI	YGGCCR	1 cut(s)	774
AcsI	RAATTY	4 cut(s)	194, 716, 878, 970
AcuI	CTGAAG	2 cut(s)	290, 309
AfaI	GTAC	2 cut(s)	245, 647
AfiI	CCNNNNNNNGG	4 cut(s)	118, 605, 783, 1067
AflIII	ACRYGT	3 cut(s)	347, 533, 622
AgsI	TTSAA	6 cut(s)	331, 542, 653, 878, 976, 1096
AjiI	CACGTC	1 cut(s)	496
AjnI	CCWGG	1 cut(s)	757
Alw21I	GWGCWC	2 cut(s)	235, 598
Alw44I	GTGCAC	1 cut(s)	594
AlwNI	CAGNNNCTG	1 cut(s)	241
AoxI	GGCC	1 cut(s)	774
ApaLI	GTGCAC	1 cut(s)	594
ApeKI	GCWGC	4 cut(s)	238, 272, 365, 566
ApoI	RAATTY	4 cut(s)	194, 716, 878, 970
AseI	ATTAAT	1 cut(s)	909
AspA2I	CCTAGG	1 cut(s)	599
AspLEI	GCGC	1 cut(s)	260
AsuNHI	GCTAGC	1 cut(s)	631
AvrII	CCTAGG	1 cut(s)	599
BaeGI	GKGCMC	1 cut(s)	598
BaeI	ACNNNNGTAYC	2 cut(s)	372, 405
BalI	TGGCCA	1 cut(s)	776
BanII	GRGCYC	2 cut(s)	235, 613
BauI	CACGAG	1 cut(s)	1007
BbsI	GAAGAC	1 cut(s)	7
Bbv12I	GWGCWC	2 cut(s)	235, 598
BbvI	GCAGC	4 cut(s)	250, 259, 352, 553
BccI	CCATC	2 cut(s)	1066, 1096
BciT130I	CCWGG	1 cut(s)	759
BciVI	GTATCC	1 cut(s)	373
BfaI	CTAG	4 cut(s)	600, 632, 999, 1016
BfuAI	ACCTGC	1 cut(s)	331
BfuI	GTATCC	1 cut(s)	373
BglII	AGATCT	1 cut(s)	1089
BisI	GCNGC	5 cut(s)	5, 239, 273, 366, 567
BlnI	CCTAGG	1 cut(s)	599
BlpI	GCTNAGC	1 cut(s)	234
BlsI	GCNGC	5 cut(s)	6, 240, 274, 367, 568
Bme1390I	CCNGG	1 cut(s)	759
BmgBI	CACGTC	1 cut(s)	496
BmiI	GGNNCC	1 cut(s)	612
BmrFI	CCNGG	1 cut(s)	759
BmsI	GCATC	7 cut(s)	330, 389, 536, 814, 888, 918, 928
BmtI	GCTAGC	1 cut(s)	635
BpiI	GAAGAC	1 cut(s)	7
BpmI	CTGGAG	2 cut(s)	156, 597
Bpu1102I	GCTNAGC	1 cut(s)	234
BsaAI	YACGTR	1 cut(s)	348
BsaBI	GATNNNNATC	1 cut(s)	550
BsaJI	CCNNGG	2 cut(s)	599, 758
BsaXI	ACNNNNNCTCC	2 cut(s)	154, 184
Bsc4I	CCNNNNNNNGG	4 cut(s)	118, 605, 783, 1067
Bse1I	ACTGG	1 cut(s)	325
Bse3DI	GCAATG	1 cut(s)	777
Bse8I	GATNNNNATC	1 cut(s)	550
BseBI	CCWGG	1 cut(s)	759
BseDI	CCNNGG	2 cut(s)	599, 758
BseGI	GGATG	5 cut(s)	321, 490, 551, 847, 1077
BseJI	GATNNNNATC	1 cut(s)	550
BseLI	CCNNNNNNNGG	4 cut(s)	118, 605, 783, 1067
BseMI	GCAATG	1 cut(s)	777
BseMII	CTCAG	5 cut(s)	248, 290, 651, 809, 923
BseNI	ACTGG	1 cut(s)	325
BseSI	GKGCMC	1 cut(s)	598
BseXI	GCAGC	4 cut(s)	250, 259, 352, 553
BsgI	GTGCAG	1 cut(s)	1072
Bsh1236I	CGCG	1 cut(s)	260
BshFI	GGCC	1 cut(s)	776
BsiHKAI	GWGCWC	2 cut(s)	235, 598
BslFI	GGGAC	1 cut(s)	535
BslI	CCNNNNNNNGG	4 cut(s)	118, 605, 783, 1067
BsmFI	GGGAC	1 cut(s)	535
BsnI	GGCC	1 cut(s)	776
Bsp1286I	GDGCHC	3 cut(s)	235, 598, 613
Bsp1407I	TGTACA	1 cut(s)	243
Bsp143I	GATC	2 cut(s)	965, 1089
Bsp1720I	GCTNAGC	1 cut(s)	234
BspACI	CCGC	5 cut(s)	5, 56, 109, 122, 584
BspANI	GGCC	1 cut(s)	776
BspCNI	CTCAG	5 cut(s)	247, 289, 652, 810, 924
BspFNI	CGCG	1 cut(s)	260
BspLI	GGNNCC	1 cut(s)	612
BspMI	ACCTGC	1 cut(s)	331
BspOI	GCTAGC	1 cut(s)	635
BsrDI	GCAATG	1 cut(s)	777
BsrGI	TGTACA	1 cut(s)	243
BsrI	ACTGG	1 cut(s)	325
BssECI	CCNNGG	2 cut(s)	599, 758
BssMI	GATC	2 cut(s)	965, 1089
BssNAI	GTATAC	1 cut(s)	285
BssSI	CACGAG	1 cut(s)	1007
BssT1I	CCWWGG	1 cut(s)	599
Bst1107I	GTATAC	1 cut(s)	285
Bst2BI	CACGAG	1 cut(s)	1007
Bst2UI	CCWGG	1 cut(s)	759
Bst4CI	ACNGT	3 cut(s)	81, 450, 477
BstAUI	TGTACA	1 cut(s)	243
BstBAI	YACGTR	1 cut(s)	348
BstC8I	GCNNGC	2 cut(s)	319, 633
BstDEI	CTNAG	9 cut(s)	8, 234, 276, 456, 660, 818, 867, 932, 985
BstEII	GGTNACC	1 cut(s)	812
BstENI	CCTNNNNNAGG	1 cut(s)	1065
BstF5I	GGATG	5 cut(s)	321, 490, 551, 847, 1077
BstFNI	CGCG	1 cut(s)	260
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	2 cut(s)	968, 1092
BstMBI	GATC	2 cut(s)	965, 1089
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstNI	CCWGG	1 cut(s)	759
BstNSI	RCATGY	4 cut(s)	139, 321, 537, 626
BstPI	GGTNACC	1 cut(s)	812
BstSCI	CCNGG	1 cut(s)	757
BstSLI	GKGCMC	1 cut(s)	598
BstUI	CGCG	1 cut(s)	260
BstV1I	GCAGC	4 cut(s)	250, 259, 352, 553
BstV2I	GAAGAC	1 cut(s)	7
BstX2I	RGATCY	1 cut(s)	1089
BstYI	RGATCY	1 cut(s)	1089
BstZ17I	GTATAC	1 cut(s)	285
BsuI	GTATCC	1 cut(s)	373
BsuRI	GGCC	1 cut(s)	776
BtrI	CACGTC	1 cut(s)	496
BtsCI	GGATG	5 cut(s)	321, 490, 551, 847, 1077
BtsI	GCAGTG	1 cut(s)	164
BtsIMutI	CAGTG	1 cut(s)	164
BveI	ACCTGC	1 cut(s)	331
Cac8I	GCNNGC	2 cut(s)	319, 633
CaiI	CAGNNNCTG	1 cut(s)	241
CfoI	GCGC	1 cut(s)	260
Csp6I	GTAC	2 cut(s)	244, 646
CspCI	CAANNNNNGTGG	2 cut(s)	459, 494
CviAII	CATG	8 cut(s)	136, 318, 335, 534, 623, 670, 742, 838
CviQI	GTAC	2 cut(s)	244, 646
DdeI	CTNAG	9 cut(s)	8, 234, 276, 456, 660, 818, 867, 932, 985
DpnI	GATC	2 cut(s)	967, 1091
DpnII	GATC	2 cut(s)	965, 1089
DraI	TTTAAA	1 cut(s)	97
EaeI	YGGCCR	1 cut(s)	774
Ecl136II	GAGCTC	1 cut(s)	233
Eco130I	CCWWGG	1 cut(s)	599
Eco24I	GRGCYC	2 cut(s)	235, 613
Eco53kI	GAGCTC	1 cut(s)	233
Eco57I	CTGAAG	2 cut(s)	290, 309
Eco91I	GGTNACC	1 cut(s)	812
EcoICRI	GAGCTC	1 cut(s)	233
EcoNI	CCTNNNNNAGG	1 cut(s)	1065
EcoO65I	GGTNACC	1 cut(s)	812
EcoRII	CCWGG	1 cut(s)	757
EcoT14I	CCWWGG	1 cut(s)	599
EcoT22I	ATGCAT	1 cut(s)	323
EcoT38I	GRGCYC	2 cut(s)	235, 613
ErhI	CCWWGG	1 cut(s)	599
FaeI	CATG	8 cut(s)	139, 321, 338, 537, 626, 673, 745, 841
FaqI	GGGAC	1 cut(s)	535
FatI	CATG	8 cut(s)	135, 317, 334, 533, 622, 669, 741, 837
FauI	CCCGC	3 cut(s)	49, 115, 116
FblI	GTMKAC	1 cut(s)	284
Fnu4HI	GCNGC	5 cut(s)	5, 239, 273, 366, 567
FokI	GGATG	5 cut(s)	308, 497, 558, 854, 1084
FriOI	GRGCYC	2 cut(s)	235, 613
Fsp4HI	GCNGC	5 cut(s)	5, 239, 273, 366, 567
FspBI	CTAG	4 cut(s)	600, 632, 999, 1016
GlaI	GCGC	1 cut(s)	259
GluI	GCNGC	5 cut(s)	5, 239, 273, 366, 567
GsuI	CTGGAG	2 cut(s)	156, 597
HaeIII	GGCC	1 cut(s)	776
HhaI	GCGC	1 cut(s)	260
Hin1II	CATG	8 cut(s)	139, 321, 338, 537, 626, 673, 745, 841
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HindIII	AAGCTT	2 cut(s)	291, 872
HinfI	GANTC	1 cut(s)	653
Hpy166II	GTNNAC	4 cut(s)	128, 285, 596, 667
Hpy188I	TCNGA	5 cut(s)	279, 511, 661, 698, 892
Hpy188III	TCNNGA	5 cut(s)	35, 433, 614, 1007, 1096
Hpy8I	GTNNAC	4 cut(s)	128, 285, 596, 667
HpyAV	CCTTC	4 cut(s)	43, 136, 209, 536
HpyCH4III	ACNGT	3 cut(s)	81, 450, 477
HpyCH4IV	ACGT	3 cut(s)	27, 347, 495
HpyCH4V	TGCA	9 cut(s)	317, 321, 499, 596, 683, 782, 901, 1028, 1053
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HpyF3I	CTNAG	9 cut(s)	8, 234, 276, 456, 660, 818, 867, 932, 985
HpySE526I	ACGT	3 cut(s)	27, 347, 495
Hsp92II	CATG	8 cut(s)	139, 321, 338, 537, 626, 673, 745, 841
HspAI	GCGC	1 cut(s)	258
Kzo9I	GATC	2 cut(s)	965, 1089
LmnI	GCTCC	3 cut(s)	132, 230, 616
LpnPI	CCDG	9 cut(s)	186, 326, 338, 418, 477, 627, 744, 771, 830
Lsp1109I	GCAGC	4 cut(s)	250, 259, 352, 553
LweI	GCATC	7 cut(s)	330, 389, 536, 814, 888, 918, 928
MaeI	CTAG	4 cut(s)	600, 632, 999, 1016
MaeII	ACGT	3 cut(s)	27, 347, 495
MaeIII	GTNAC	4 cut(s)	59, 218, 343, 812
MalI	GATC	2 cut(s)	967, 1091
MboI	GATC	2 cut(s)	965, 1089
MboII	GAAGA	5 cut(s)	7, 296, 648, 776, 1084
MflI	RGATCY	1 cut(s)	1089
MhlI	GDGCHC	3 cut(s)	235, 598, 613
MlsI	TGGCCA	1 cut(s)	776
MluCI	AATT	9 cut(s)	186, 194, 438, 716, 789, 878, 910, 970, 1023
MluNI	TGGCCA	1 cut(s)	776
Mox20I	TGGCCA	1 cut(s)	776
Mph1103I	ATGCAT	1 cut(s)	323
MscI	TGGCCA	1 cut(s)	776
MseI	TTAA	6 cut(s)	72, 83, 96, 794, 909, 954
Msp20I	TGGCCA	1 cut(s)	776
MspA1I	CMGCKG	1 cut(s)	241
MspR9I	CCNGG	1 cut(s)	759
MvaI	CCWGG	1 cut(s)	759
MvnI	CGCG	1 cut(s)	260
MwoI	GCNNNNNNNGC	1 cut(s)	362
NdeII	GATC	2 cut(s)	965, 1089
NheI	GCTAGC	1 cut(s)	631
NlaIII	CATG	8 cut(s)	139, 321, 338, 537, 626, 673, 745, 841
NlaIV	GGNNCC	1 cut(s)	612
NmuCI	GTSAC	1 cut(s)	59
NsiI	ATGCAT	1 cut(s)	323
NspI	RCATGY	4 cut(s)	139, 321, 537, 626
PaeI	GCATGC	1 cut(s)	321
PciI	ACATGT	2 cut(s)	533, 622
PfeI	GAWTC	1 cut(s)	653
PkrI	GCNGC	5 cut(s)	6, 240, 274, 367, 568
Ppu21I	YACGTR	1 cut(s)	348
PscI	ACATGT	2 cut(s)	533, 622
PshBI	ATTAAT	1 cut(s)	909
PsiI	TTATAA	1 cut(s)	444
Psp124BI	GAGCTC	1 cut(s)	235
Psp6I	CCWGG	1 cut(s)	757
PspEI	GGTNACC	1 cut(s)	812
PspGI	CCWGG	1 cut(s)	757
PspN4I	GGNNCC	1 cut(s)	612
PstNI	CAGNNNCTG	1 cut(s)	241
PsuI	RGATCY	1 cut(s)	1089
PvuII	CAGCTG	1 cut(s)	241
RsaI	GTAC	2 cut(s)	245, 647
RsaNI	GTAC	2 cut(s)	244, 646
SacI	GAGCTC	1 cut(s)	235
SaqAI	TTAA	6 cut(s)	72, 83, 96, 794, 909, 954
SatI	GCNGC	5 cut(s)	5, 239, 273, 366, 567
Sau3AI	GATC	2 cut(s)	965, 1089
ScrFI	CCNGG	1 cut(s)	759
SduI	GDGCHC	3 cut(s)	235, 598, 613
SfaNI	GCATC	7 cut(s)	330, 389, 536, 814, 888, 918, 928
SphI	GCATGC	1 cut(s)	321
Sse9I	AATT	9 cut(s)	186, 194, 438, 716, 789, 878, 910, 970, 1023
SsiI	CCGC	5 cut(s)	5, 56, 109, 122, 584
SspMI	CTAG	4 cut(s)	600, 632, 999, 1016
SstI	GAGCTC	1 cut(s)	235
StyD4I	CCNGG	1 cut(s)	757
StyI	CCWWGG	1 cut(s)	599
TaaI	ACNGT	3 cut(s)	81, 450, 477
TaiI	ACGT	3 cut(s)	30, 350, 498
TaqI	TCGA	2 cut(s)	140, 968
TasI	AATT	9 cut(s)	186, 194, 438, 716, 789, 878, 910, 970, 1023
TatI	WGTACW	2 cut(s)	243, 645
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	653
Tru1I	TTAA	6 cut(s)	72, 83, 96, 794, 909, 954
Tru9I	TTAA	6 cut(s)	72, 83, 96, 794, 909, 954
TscAI	CASTG	1 cut(s)	171
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	4 cut(s)	238, 272, 365, 566
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	4 cut(s)	429, 730, 895, 1035
TspGWI	ACGGA	1 cut(s)	145
TspRI	CASTG	1 cut(s)	171
VneI	GTGCAC	1 cut(s)	594
VspI	ATTAAT	1 cut(s)	909
XagI	CCTNNNNNAGG	1 cut(s)	1065
XapI	RAATTY	4 cut(s)	194, 716, 878, 970
XceI	RCATGY	4 cut(s)	139, 321, 537, 626
XcmI	CCANNNNNNNNNTGG	2 cut(s)	332, 835
XmaJI	CCTAGG	1 cut(s)	599
XmiI	GTMKAC	1 cut(s)	284
XspI	CTAG	4 cut(s)	600, 632, 999, 1016
Zsp2I	ATGCAT	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.