Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0009398

Physical Location & Seq

Genomic Coordinates Reverse (-)

24782701 .. 24788253

Gene Structure 5553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G218300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGTCGCGGGAGAGACCCAAAAGAGGCACACTACCTCCGGCTCAAGAGAATATTGAGAAATTAGAGAAAGTTGTAGAGGAAGGTAATTACTATGGAGCTCAGCAAATGTACAAATCTATTAGTGCAAGATATGTATCTGCTCAGAGGTATTCTGAGGCTTTGGATCTCCTTCAGTCTGGTGCATGCAACCAACTGAAACATGGGCAGGTTACTTGTGGGGCAGAGTTAGCTGCTTTGTTTGTGGATACACTTGTCAAAGGAAGATTCCCTTATGATGATGAAATCCTTGCCCGTGTCAGGAAAATTTATAAAGAATTTCCTCGGATACCTGTGCCACAACAGTTGGGGGATTTAGATGACATGCAACAACTTTCTGAAACCCTTGGGGCAGCAAAAACATGTGTTGAGGGCTGCTCATCATTCCTAAAAGCTGCTCTTAAGTGGTCTGTGGAGTTTGGCTCACCCAGGGTTGGGGCTCCAGAAATACATGTTATGTTAGCGAACTACATATATTTTGAATCTCCTGAGGTGGACATGGTTAGGGTGTCACATCATTTCGTCAGAGGAAACAACCCAAAAGAGTTTGCTTCAACCTTAGTAAATTTTATGGGAAAGTGTTATCCAGGGGAAGATGATTTGGCCATTGCACGAGCGATTTTAATGTATTTGTCTTTAGGTAACCTGAGAGATGCCAATAATCTCATGGATGAAATAAAGAAACAAGTGGAATCTAAGCAGCTCGACTTTCCCCAATCGGATTTGATCCAGTTCATCAATTTTCTTTTGCAAACGTTGTTAAGAGATGCTCTTCCTCTTTTCAATATGTTGAGAGCTAAGTACAAATCAAGCTTAGACAGAGAACCTACATTTCATGAGTTGCTAGATGAAATTGCAGAGAAGTTTTATGGAGTGCGGCGCCGAAATCCTCTGCAAGGGATGGGGATGTTTGGGGAGATCTTCAAGATGATGGGAGGTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF410

Protein Analysis

327

Amino Acids

37.03

Weight (kDa)

6.06

Isoelectric Point (pI)

45.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009398)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63220 AT5G63220 AT5G63220
fragaria_vesca	FvH4_7g20140 FvH4_7g20140
malus_domestica	MD01G1131100.v1.1 MD07G1179200.v1.1
prunus_persica	Prupe.2G218300_v2.0.a1
pyrus_communis	pycom01g13990 pycom07g17280
rosa_chinensis	RchiOBHm_Chr1g0364111
rosa_laevigata	RLG00000027515
rosa_multiflora	Rmu_co8195120.1_g000001 Rmu_sc0000071.1_g000019 Rmu_sc0011704.1_g000003
rosa_roxburghii	Rroxscaffold_4G00292630
rosa_rugosa	Rorug01G0313600
rosa_samantha	Rh1AG321100 Rh1BG284300 Rh1CG300700 Rh1DG315700
rosa_wichuraiana	Rw1G028470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	309
Acc36I	ACCTGC	1 cut(s)	196
AccB1I	GGYRCC	1 cut(s)	915
AccII	CGCG	1 cut(s)	7
AciI	CCGC	2 cut(s)	7, 913
AclI	AACGTT	1 cut(s)	791
AclWI	GGATC	2 cut(s)	171, 757
AcoI	YGGCCR	1 cut(s)	639
AcsI	RAATTY	3 cut(s)	303, 314, 601
AcuI	CTGAAG	1 cut(s)	155
AcyI	GRCGYC	1 cut(s)	916
AfaI	GTAC	2 cut(s)	110, 839
AfiI	CCNNNNNNNGG	5 cut(s)	23, 297, 470, 471, 932
AflII	CTTAAG	1 cut(s)	437
AflIII	ACRYGT	2 cut(s)	398, 487
AgsI	TTSAA	4 cut(s)	518, 591, 820, 961
AjnI	CCWGG	2 cut(s)	464, 622
AluBI	AGCT	6 cut(s)	98, 230, 431, 739, 833, 849
AluI	AGCT	6 cut(s)	98, 230, 431, 739, 833, 849
Alw21I	GWGCWC	1 cut(s)	100
Alw26I	GTCTC	1 cut(s)	7
AlwI	GGATC	2 cut(s)	171, 757
AoxI	GGCC	1 cut(s)	639
ApeKI	GCWGC	5 cut(s)	230, 389, 411, 431, 736
ApoI	RAATTY	3 cut(s)	303, 314, 601
AspLEI	GCGC	1 cut(s)	918
AsuHPI	GGTGA	1 cut(s)	453
AxyI	CCTNAGG	1 cut(s)	525
BaeI	ACNNNNGTAYC	2 cut(s)	237, 270
BalI	TGGCCA	1 cut(s)	641
BanI	GGYRCC	1 cut(s)	915
BanII	GRGCYC	2 cut(s)	100, 478
BauI	CACGAG	1 cut(s)	648
Bbv12I	GWGCWC	1 cut(s)	100
BbvI	GCAGC	5 cut(s)	217, 398, 401, 418, 748
BccI	CCATC	2 cut(s)	931, 961
BciT130I	CCWGG	2 cut(s)	466, 624
BciVI	GTATCC	2 cut(s)	238, 318
BcoDI	GTCTC	1 cut(s)	7
BfaI	CTAG	1 cut(s)	881
BfoI	RGCGCY	1 cut(s)	919
BfrI	CTTAAG	1 cut(s)	437
BfuAI	ACCTGC	1 cut(s)	196
BfuI	GTATCC	2 cut(s)	238, 318
BglII	AGATCT	1 cut(s)	954
BisI	GCNGC	6 cut(s)	231, 390, 412, 432, 737, 914
BlpI	GCTNAGC	1 cut(s)	99
BlsI	GCNGC	6 cut(s)	232, 391, 413, 433, 738, 915
Bme1390I	CCNGG	2 cut(s)	466, 624
BmiI	GGNNCC	2 cut(s)	477, 917
BmrFI	CCNGG	2 cut(s)	466, 624
BmsI	GCATC	2 cut(s)	679, 793
BplI	GAGNNNNNCTC	4 cut(s)	398, 430, 443, 475
BpmI	CTGGAG	1 cut(s)	462
Bpu1102I	GCTNAGC	1 cut(s)	99
BpuEI	CTTGAG	1 cut(s)	27
BsaBI	GATNNNNATC	1 cut(s)	133
BsaHI	GRCGYC	1 cut(s)	916
BsaI	GGTCTC	1 cut(s)	7
BsaJI	CCNNGG	5 cut(s)	320, 382, 464, 465, 623
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bsc4I	CCNNNNNNNGG	5 cut(s)	23, 297, 470, 471, 932
Bse1I	ACTGG	1 cut(s)	766
Bse21I	CCTNAGG	1 cut(s)	525
Bse3DI	GCAATG	1 cut(s)	642
Bse8I	GATNNNNATC	1 cut(s)	133
BseBI	CCWGG	2 cut(s)	466, 624
BseDI	CCNNGG	5 cut(s)	320, 382, 464, 465, 623
BseGI	GGATG	3 cut(s)	712, 942, 948
BseJI	GATNNNNATC	1 cut(s)	133
BseLI	CCNNNNNNNGG	5 cut(s)	23, 297, 470, 471, 932
BseMI	GCAATG	1 cut(s)	642
BseMII	CTCAG	5 cut(s)	113, 144, 155, 516, 674
BseNI	ACTGG	1 cut(s)	766
BseXI	GCAGC	5 cut(s)	217, 398, 401, 418, 748
Bsh1236I	CGCG	1 cut(s)	7
BshFI	GGCC	1 cut(s)	641
BshNI	GGYRCC	1 cut(s)	915
BsiHKAI	GWGCWC	1 cut(s)	100
BsiSI	CCGG	1 cut(s)	38
BslI	CCNNNNNNNGG	5 cut(s)	23, 297, 470, 471, 932
BsmAI	GTCTC	1 cut(s)	7
BsnI	GGCC	1 cut(s)	641
Bso31I	GGTCTC	1 cut(s)	7
Bsp1286I	GDGCHC	2 cut(s)	100, 478
Bsp1407I	TGTACA	1 cut(s)	108
Bsp143I	GATC	3 cut(s)	163, 762, 954
Bsp1720I	GCTNAGC	1 cut(s)	99
BspACI	CCGC	2 cut(s)	7, 913
BspANI	GGCC	1 cut(s)	641
BspCNI	CTCAG	5 cut(s)	112, 145, 154, 517, 675
BspFNI	CGCG	1 cut(s)	7
BspHI	TCATGA	1 cut(s)	871
BspLI	GGNNCC	2 cut(s)	477, 917
BspMI	ACCTGC	1 cut(s)	196
BspPI	GGATC	2 cut(s)	171, 757
BspQI	GCTCTTC	1 cut(s)	813
BspT107I	GGYRCC	1 cut(s)	915
BspTI	CTTAAG	1 cut(s)	437
BspTNI	GGTCTC	1 cut(s)	7
BsrDI	GCAATG	1 cut(s)	642
BsrGI	TGTACA	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	766
BssECI	CCNNGG	5 cut(s)	320, 382, 464, 465, 623
BssMI	GATC	3 cut(s)	163, 762, 954
BssNI	GRCGYC	1 cut(s)	916
BssSI	CACGAG	1 cut(s)	648
BssT1I	CCWWGG	1 cut(s)	382
Bst2BI	CACGAG	1 cut(s)	648
Bst2UI	CCWGG	2 cut(s)	466, 624
Bst4CI	ACNGT	1 cut(s)	342
Bst6I	CTCTTC	1 cut(s)	813
BstACI	GRCGYC	1 cut(s)	916
BstAFI	CTTAAG	1 cut(s)	437
BstAUI	TGTACA	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	184
BstDEI	CTNAG	9 cut(s)	99, 141, 153, 525, 595, 683, 732, 834, 850
BstEII	GGTNACC	1 cut(s)	677
BstENI	CCTNNNNNAGG	1 cut(s)	930
BstF5I	GGATG	3 cut(s)	712, 942, 948
BstFNI	CGCG	1 cut(s)	7
BstH2I	RGCGCY	1 cut(s)	919
BstHHI	GCGC	1 cut(s)	918
BstKTI	GATC	3 cut(s)	166, 765, 957
BstMAI	GTCTC	1 cut(s)	7
BstMBI	GATC	3 cut(s)	163, 762, 954
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstNI	CCWGG	2 cut(s)	466, 624
BstNSI	RCATGY	4 cut(s)	186, 364, 402, 491
BstPI	GGTNACC	1 cut(s)	677
BstSCI	CCNGG	2 cut(s)	464, 622
BstUI	CGCG	1 cut(s)	7
BstV1I	GCAGC	5 cut(s)	217, 398, 401, 418, 748
BstX2I	RGATCY	2 cut(s)	163, 954
BstYI	RGATCY	2 cut(s)	163, 954
Bsu36I	CCTNAGG	1 cut(s)	525
BsuI	GTATCC	2 cut(s)	238, 318
BsuRI	GGCC	1 cut(s)	641
BtsCI	GGATG	3 cut(s)	712, 942, 948
BveI	ACCTGC	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	184
CciI	TCATGA	1 cut(s)	871
CfoI	GCGC	1 cut(s)	918
Csp6I	GTAC	2 cut(s)	109, 838
CspCI	CAANNNNNGTGG	2 cut(s)	324, 359
CviAII	CATG	8 cut(s)	183, 200, 361, 399, 488, 535, 703, 872
CviQI	GTAC	2 cut(s)	109, 838
DdeI	CTNAG	9 cut(s)	99, 141, 153, 525, 595, 683, 732, 834, 850
DinI	GGCGCC	1 cut(s)	917
DpnI	GATC	3 cut(s)	165, 764, 956
DpnII	GATC	3 cut(s)	163, 762, 954
EaeI	YGGCCR	1 cut(s)	639
Eam1104I	CTCTTC	1 cut(s)	813
EarI	CTCTTC	1 cut(s)	813
Ecl136II	GAGCTC	1 cut(s)	98
Eco130I	CCWWGG	1 cut(s)	382
Eco24I	GRGCYC	2 cut(s)	100, 478
Eco31I	GGTCTC	1 cut(s)	7
Eco53kI	GAGCTC	1 cut(s)	98
Eco57I	CTGAAG	1 cut(s)	155
Eco81I	CCTNAGG	1 cut(s)	525
Eco91I	GGTNACC	1 cut(s)	677
EcoICRI	GAGCTC	1 cut(s)	98
EcoNI	CCTNNNNNAGG	1 cut(s)	930
EcoO65I	GGTNACC	1 cut(s)	677
EcoRII	CCWGG	2 cut(s)	464, 622
EcoT14I	CCWWGG	1 cut(s)	382
EcoT38I	GRGCYC	2 cut(s)	100, 478
EgeI	GGCGCC	1 cut(s)	917
EheI	GGCGCC	1 cut(s)	917
ErhI	CCWWGG	1 cut(s)	382
FaeI	CATG	8 cut(s)	186, 203, 364, 402, 491, 538, 706, 875
FalI	AAGNNNNNCTT	4 cut(s)	253, 285, 420, 452
FatI	CATG	8 cut(s)	182, 199, 360, 398, 487, 534, 702, 871
Fnu4HI	GCNGC	6 cut(s)	231, 390, 412, 432, 737, 914
FokI	GGATG	3 cut(s)	719, 949, 955
FriOI	GRGCYC	2 cut(s)	100, 478
Fsp4HI	GCNGC	6 cut(s)	231, 390, 412, 432, 737, 914
FspBI	CTAG	1 cut(s)	881
GlaI	GCGC	1 cut(s)	917
GluI	GCNGC	6 cut(s)	231, 390, 412, 432, 737, 914
GsuI	CTGGAG	1 cut(s)	462
HaeII	RGCGCY	1 cut(s)	919
HaeIII	GGCC	1 cut(s)	641
HapII	CCGG	1 cut(s)	38
HhaI	GCGC	1 cut(s)	918
Hin1I	GRCGYC	1 cut(s)	916
Hin1II	CATG	8 cut(s)	186, 203, 364, 402, 491, 538, 706, 875
Hin6I	GCGC	1 cut(s)	916
HinP1I	GCGC	1 cut(s)	916
HindIII	AAGCTT	1 cut(s)	847
HinfI	GANTC	3 cut(s)	264, 518, 728
HpaII	CCGG	1 cut(s)	38
HphI	GGTGA	1 cut(s)	453
Hpy166II	GTNNAC	1 cut(s)	532
Hpy188I	TCNGA	6 cut(s)	144, 154, 324, 376, 563, 757
Hpy188III	TCNNGA	6 cut(s)	44, 298, 479, 524, 872, 961
Hpy8I	GTNNAC	1 cut(s)	532
HpyAV	CCTTC	2 cut(s)	74, 179
HpyCH4III	ACNGT	1 cut(s)	342
HpyCH4IV	ACGT	1 cut(s)	791
HpyCH4V	TGCA	8 cut(s)	125, 182, 186, 364, 647, 787, 893, 931
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	9 cut(s)	99, 141, 153, 525, 595, 683, 732, 834, 850
HpySE526I	ACGT	1 cut(s)	791
Hsp92I	GRCGYC	1 cut(s)	916
Hsp92II	CATG	8 cut(s)	186, 203, 364, 402, 491, 538, 706, 875
HspAI	GCGC	1 cut(s)	916
KasI	GGCGCC	1 cut(s)	915
Kzo9I	GATC	3 cut(s)	163, 762, 954
LguI	GCTCTTC	1 cut(s)	813
LmnI	GCTCC	2 cut(s)	95, 481
Lsp1109I	GCAGC	5 cut(s)	217, 398, 401, 418, 748
LweI	GCATC	2 cut(s)	679, 793
MaeI	CTAG	1 cut(s)	881
MaeII	ACGT	1 cut(s)	791
MaeIII	GTNAC	3 cut(s)	208, 546, 677
MalI	GATC	3 cut(s)	165, 764, 956
MboI	GATC	3 cut(s)	163, 762, 954
MboII	GAAGA	4 cut(s)	273, 641, 800, 949
MflI	RGATCY	2 cut(s)	163, 954
MhlI	GDGCHC	2 cut(s)	100, 478
MlsI	TGGCCA	1 cut(s)	641
MluCI	AATT	7 cut(s)	59, 85, 303, 314, 601, 775, 888
MluNI	TGGCCA	1 cut(s)	641
Mly113I	GGCGCC	1 cut(s)	916
Mox20I	TGGCCA	1 cut(s)	641
MscI	TGGCCA	1 cut(s)	641
MseI	TTAA	3 cut(s)	438, 659, 797
Msp20I	TGGCCA	1 cut(s)	641
MspCI	CTTAAG	1 cut(s)	437
MspI	CCGG	1 cut(s)	38
MspR9I	CCNGG	2 cut(s)	466, 624
MvaI	CCWGG	2 cut(s)	466, 624
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	1 cut(s)	227
NarI	GGCGCC	1 cut(s)	916
NdeII	GATC	3 cut(s)	163, 762, 954
NlaIII	CATG	8 cut(s)	186, 203, 364, 402, 491, 538, 706, 875
NlaIV	GGNNCC	2 cut(s)	477, 917
NmuCI	GTSAC	1 cut(s)	546
NspI	RCATGY	4 cut(s)	186, 364, 402, 491
PaeI	GCATGC	1 cut(s)	186
PagI	TCATGA	1 cut(s)	871
PasI	CCCWGGG	1 cut(s)	465
PciI	ACATGT	2 cut(s)	398, 487
PciSI	GCTCTTC	1 cut(s)	813
PfeI	GAWTC	3 cut(s)	264, 518, 728
PkrI	GCNGC	6 cut(s)	232, 391, 413, 433, 738, 915
PluTI	GGCGCC	1 cut(s)	919
PscI	ACATGT	2 cut(s)	398, 487
PsiI	TTATAA	1 cut(s)	309
Psp124BI	GAGCTC	1 cut(s)	100
Psp1406I	AACGTT	1 cut(s)	791
Psp6I	CCWGG	2 cut(s)	464, 622
PspEI	GGTNACC	1 cut(s)	677
PspGI	CCWGG	2 cut(s)	464, 622
PspN4I	GGNNCC	2 cut(s)	477, 917
PsuI	RGATCY	2 cut(s)	163, 954
RsaI	GTAC	2 cut(s)	110, 839
RsaNI	GTAC	2 cut(s)	109, 838
SacI	GAGCTC	1 cut(s)	100
SapI	GCTCTTC	1 cut(s)	813
SaqAI	TTAA	3 cut(s)	438, 659, 797
SatI	GCNGC	6 cut(s)	231, 390, 412, 432, 737, 914
Sau3AI	GATC	3 cut(s)	163, 762, 954
ScrFI	CCNGG	2 cut(s)	466, 624
SduI	GDGCHC	2 cut(s)	100, 478
SfaNI	GCATC	2 cut(s)	679, 793
SfoI	GGCGCC	1 cut(s)	917
SmlI	CTYRAG	2 cut(s)	42, 437
SmoI	CTYRAG	2 cut(s)	42, 437
SphI	GCATGC	1 cut(s)	186
Sse9I	AATT	7 cut(s)	59, 85, 303, 314, 601, 775, 888
SsiI	CCGC	2 cut(s)	7, 913
SspDI	GGCGCC	1 cut(s)	915
SspI	AATATT	1 cut(s)	52
SspMI	CTAG	1 cut(s)	881
SstI	GAGCTC	1 cut(s)	100
StyD4I	CCNGG	2 cut(s)	464, 622
StyI	CCWWGG	1 cut(s)	382
TaaI	ACNGT	1 cut(s)	342
TaiI	ACGT	1 cut(s)	794
TaqI	TCGA	1 cut(s)	741
TasI	AATT	7 cut(s)	59, 85, 303, 314, 601, 775, 888
TatI	WGTACW	2 cut(s)	108, 837
TauI	GCSGC	1 cut(s)	916
TfiI	GAWTC	3 cut(s)	264, 518, 728
Tru1I	TTAA	3 cut(s)	438, 659, 797
Tru9I	TTAA	3 cut(s)	438, 659, 797
TseFI	GTSAC	1 cut(s)	546
TseI	GCWGC	5 cut(s)	230, 389, 411, 431, 736
Tsp45I	GTSAC	1 cut(s)	546
TspDTI	ATGAA	5 cut(s)	294, 723, 760, 860, 900
Vha464I	CTTAAG	1 cut(s)	437
XagI	CCTNNNNNAGG	1 cut(s)	930
XapI	RAATTY	3 cut(s)	303, 314, 601
XceI	RCATGY	4 cut(s)	186, 364, 402, 491
XcmI	CCANNNNNNNNNTGG	2 cut(s)	197, 700
XspI	CTAG	1 cut(s)	881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.