Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0009398

Physical Location & Seq

Genomic Coordinates Reverse (-)

14300749 .. 14305622

Gene Structure 4874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g13990.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGGGTATGTAGATATCACACCCTTTTTTATATTAAGGGGAGTAGATGTAATTCAGCGTAACTACCAAACCCGGATTCGTTTTGTGTGTTTCGAGTTGGAGAGAGTACAACCTTTGCTTACTTTGAACTCGACGCTCCCAGAAATTGAGACCATCATCATGTCGCGGGAGAGACCCAAAAGAGGCGCATTGCCTCCCGCCCAAGAGAATATTCAGAAATTAGAGAAAGTTGTAGAGGAAGGTAATTTCTATGGAGCTCAACAAATGTACAAATCAATTAGTGCAAGATATGTAGCTGCTCAGAGGTTTTCCGAGGCTGTGGATATCCTTCAGTCTGGCGCATGGAACCAACTGAAACATGGGCAGGTTACTTGTGGTGCTGAGTTAGCTGCTTTGTTTGTGGAAACACTTGTCAAAGGAAGATTCCCTTATGACGATGAAACCTTAGTTCGTGTCAGGAAAATTTATAAAGCATTTCCTCGGATACCTGTGCCGCAACAGTTAGGGGATTTAGATGACATGCAACAACTGTCTGAAACACTTGGGGCAGCAAAAACATGTGTTGAGGGCTGCTCATCATTCCTAAAGGCTGCTCTTAAGTGGTCTAAGGAGTTTGGTGCACCCAGGAGTGGAGCTCCAGAAATACATGTTATGCTAGCGAACTACATATATTTTGAATCTCCTGAGGTGGACATGGTTAGAGTGTCACATCATTTTGTTAGAGGAAACAACCCCAAAGAGTTTGCTTCGACTTTAGTAAATTTTATGGGCAAGTGTTATCCAGGGGAAGATGATGTGGCCATTGCCCGAGCTATTTTAATGTATTTGTCAGTTGGTAATCTGAGAGATGCCAATATTCTCATGGATGAGATAAAGAAGCAAGTGGAGTCTAAGGAGCTTGACTTTCCCAAATCCGATTTGATCCAGTTCATCAATTTTCTTTTGCAAACGTTGTTGAGAGATGCTCTTCCGCTTTTTAATATGTTGAGAGCGAAATACAAATCAAGCTTAGACAGAGAACCGACATTTCATGAGTTGCTGGATGAAATTGCGGAGAAGTTTTATGGAGTACGACGCAGAAATCCACTGCAAGGGATGGGGATGTTCGGCGAGATTTTCAAGATGATGGGAGGTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF410

Protein Analysis

380

Amino Acids

43.22

Weight (kDa)

6.57

Isoelectric Point (pI)

42.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009398)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63220 AT5G63220 AT5G63220
fragaria_vesca	FvH4_7g20140 FvH4_7g20140
malus_domestica	MD01G1131100.v1.1 MD07G1179200.v1.1
prunus_persica	Prupe.2G218300_v2.0.a1
pyrus_communis	pycom01g13990 pycom07g17280
rosa_chinensis	RchiOBHm_Chr1g0364111
rosa_laevigata	RLG00000027515
rosa_multiflora	Rmu_co8195120.1_g000001 Rmu_sc0000071.1_g000019 Rmu_sc0011704.1_g000003
rosa_roxburghii	Rroxscaffold_4G00292630
rosa_rugosa	Rorug01G0313600
rosa_samantha	Rh1AG321100 Rh1BG284300 Rh1CG300700 Rh1DG315700
rosa_wichuraiana	Rw1G028470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	468
Acc36I	ACCTGC	1 cut(s)	355
AccII	CGCG	1 cut(s)	166
AciI	CCGC	5 cut(s)	166, 198, 494, 971, 1052
AclI	AACGTT	1 cut(s)	950
AclWI	GGATC	1 cut(s)	916
AcoI	YGGCCR	1 cut(s)	798
AcsI	RAATTY	2 cut(s)	462, 760
AcuI	CTGAAG	1 cut(s)	314
AfaI	GTAC	3 cut(s)	108, 269, 1071
AfiI	CCNNNNNNNGG	3 cut(s)	182, 629, 1091
AflII	CTTAAG	1 cut(s)	596
AflIII	ACRYGT	2 cut(s)	557, 646
AgsI	TTSAA	3 cut(s)	127, 677, 1120
AjnI	CCWGG	2 cut(s)	623, 781
AjuI	GAANNNNNNNTTGG	4 cut(s)	60, 92, 195, 227
AluBI	AGCT	7 cut(s)	257, 296, 389, 635, 812, 898, 1008
AluI	AGCT	7 cut(s)	257, 296, 389, 635, 812, 898, 1008
Alw21I	GWGCWC	3 cut(s)	259, 622, 637
Alw26I	GTCTC	2 cut(s)	143, 166
Alw44I	GTGCAC	1 cut(s)	618
AlwI	GGATC	1 cut(s)	916
Ama87I	CYCGRG	1 cut(s)	807
AoxI	GGCC	1 cut(s)	798
ApaLI	GTGCAC	1 cut(s)	618
ApeKI	GCWGC	5 cut(s)	296, 389, 548, 570, 590
ApoI	RAATTY	2 cut(s)	462, 760
AspLEI	GCGC	2 cut(s)	188, 341
AsuC2I	CCSGG	1 cut(s)	73
AsuNHI	GCTAGC	1 cut(s)	655
AvaI	CYCGRG	1 cut(s)	807
AxyI	CCTNAGG	1 cut(s)	684
BaeGI	GKGCMC	1 cut(s)	622
BalI	TGGCCA	1 cut(s)	800
BanII	GRGCYC	2 cut(s)	259, 637
Bbv12I	GWGCWC	3 cut(s)	259, 622, 637
BbvI	GCAGC	5 cut(s)	283, 376, 557, 560, 577
BccI	CCATC	3 cut(s)	161, 1090, 1120
BciT130I	CCWGG	2 cut(s)	625, 783
BciVI	GTATCC	1 cut(s)	477
BcnI	CCSGG	1 cut(s)	73
BcoDI	GTCTC	2 cut(s)	143, 166
BfaI	CTAG	1 cut(s)	656
BfrI	CTTAAG	1 cut(s)	596
BfuAI	ACCTGC	1 cut(s)	355
BfuI	GTATCC	1 cut(s)	477
BisI	GCNGC	6 cut(s)	297, 390, 494, 549, 571, 591
BlsI	GCNGC	6 cut(s)	298, 391, 495, 550, 572, 592
Bme1390I	CCNGG	3 cut(s)	73, 625, 783
BmeT110I	CYCGRG	1 cut(s)	807
BmiI	GGNNCC	1 cut(s)	347
BmrFI	CCNGG	3 cut(s)	73, 625, 783
BmsI	GCATC	2 cut(s)	838, 952
BmtI	GCTAGC	1 cut(s)	659
BplI	GAGNNNNNCTC	6 cut(s)	557, 589, 619, 651, 949, 981
BpmI	CTGGAG	1 cut(s)	621
BpuMI	CCSGG	1 cut(s)	73
BsaI	GGTCTC	2 cut(s)	143, 166
BsaJI	CCNNGG	4 cut(s)	312, 479, 623, 782
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	3 cut(s)	182, 629, 1091
Bse1I	ACTGG	1 cut(s)	925
Bse21I	CCTNAGG	1 cut(s)	684
Bse3DI	GCAATG	2 cut(s)	188, 801
BseBI	CCWGG	2 cut(s)	625, 783
BseDI	CCNNGG	4 cut(s)	312, 479, 623, 782
BseGI	GGATG	4 cut(s)	871, 1048, 1101, 1107
BseLI	CCNNNNNNNGG	3 cut(s)	182, 629, 1091
BseMI	GCAATG	2 cut(s)	188, 801
BseMII	CTCAG	4 cut(s)	314, 372, 675, 833
BseNI	ACTGG	1 cut(s)	925
BseSI	GKGCMC	1 cut(s)	622
BseXI	GCAGC	5 cut(s)	283, 376, 557, 560, 577
Bsh1236I	CGCG	1 cut(s)	166
BshFI	GGCC	1 cut(s)	800
BsiHKAI	GWGCWC	3 cut(s)	259, 622, 637
BsiHKCI	CYCGRG	1 cut(s)	807
BsiSI	CCGG	1 cut(s)	73
BslI	CCNNNNNNNGG	3 cut(s)	182, 629, 1091
BsmAI	GTCTC	2 cut(s)	143, 166
BsnI	GGCC	1 cut(s)	800
Bso31I	GGTCTC	2 cut(s)	143, 166
BsoBI	CYCGRG	1 cut(s)	807
Bsp1286I	GDGCHC	3 cut(s)	259, 622, 637
Bsp1407I	TGTACA	1 cut(s)	267
Bsp143I	GATC	1 cut(s)	921
BspACI	CCGC	5 cut(s)	166, 198, 494, 971, 1052
BspANI	GGCC	1 cut(s)	800
BspCNI	CTCAG	4 cut(s)	313, 373, 676, 834
BspFNI	CGCG	1 cut(s)	166
BspHI	TCATGA	1 cut(s)	1030
BspLI	GGNNCC	1 cut(s)	347
BspMI	ACCTGC	1 cut(s)	355
BspOI	GCTAGC	1 cut(s)	659
BspPI	GGATC	1 cut(s)	916
BspQI	GCTCTTC	1 cut(s)	972
BspTI	CTTAAG	1 cut(s)	596
BspTNI	GGTCTC	2 cut(s)	143, 166
BsrDI	GCAATG	2 cut(s)	188, 801
BsrGI	TGTACA	1 cut(s)	267
BsrI	ACTGG	1 cut(s)	925
BssECI	CCNNGG	4 cut(s)	312, 479, 623, 782
BssMI	GATC	1 cut(s)	921
Bst2UI	CCWGG	2 cut(s)	625, 783
Bst4CI	ACNGT	2 cut(s)	501, 531
Bst6I	CTCTTC	1 cut(s)	972
BstAFI	CTTAAG	1 cut(s)	596
BstAUI	TGTACA	1 cut(s)	267
BstC8I	GCNNGC	1 cut(s)	657
BstDEI	CTNAG	8 cut(s)	300, 381, 445, 606, 684, 842, 891, 1009
BstF5I	GGATG	4 cut(s)	871, 1048, 1101, 1107
BstFNI	CGCG	1 cut(s)	166
BstHHI	GCGC	2 cut(s)	188, 341
BstKTI	GATC	1 cut(s)	924
BstMAI	GTCTC	2 cut(s)	143, 166
BstMBI	GATC	1 cut(s)	921
BstMWI	GCNNNNNNNGC	1 cut(s)	386
BstNI	CCWGG	2 cut(s)	625, 783
BstNSI	RCATGY	3 cut(s)	523, 561, 650
BstSCI	CCNGG	3 cut(s)	71, 623, 781
BstSLI	GKGCMC	1 cut(s)	622
BstUI	CGCG	1 cut(s)	166
BstV1I	GCAGC	5 cut(s)	283, 376, 557, 560, 577
Bsu36I	CCTNAGG	1 cut(s)	684
BsuI	GTATCC	1 cut(s)	477
BsuRI	GGCC	1 cut(s)	800
BtsCI	GGATG	4 cut(s)	871, 1048, 1101, 1107
BtsI	GCAGTG	1 cut(s)	1085
BtsIMutI	CAGTG	1 cut(s)	1085
BveI	ACCTGC	1 cut(s)	355
Cac8I	GCNNGC	1 cut(s)	657
CciI	TCATGA	1 cut(s)	1030
CfoI	GCGC	2 cut(s)	188, 341
CseI	GACGC	2 cut(s)	142, 1083
Csp6I	GTAC	3 cut(s)	107, 268, 1070
CviAII	CATG	9 cut(s)	160, 342, 359, 520, 558, 647, 694, 862, 1031
CviQI	GTAC	3 cut(s)	107, 268, 1070
DdeI	CTNAG	8 cut(s)	300, 381, 445, 606, 684, 842, 891, 1009
DpnI	GATC	1 cut(s)	923
DpnII	GATC	1 cut(s)	921
EaeI	YGGCCR	1 cut(s)	798
Eam1104I	CTCTTC	1 cut(s)	972
EarI	CTCTTC	1 cut(s)	972
Ecl136II	GAGCTC	2 cut(s)	257, 635
Eco24I	GRGCYC	2 cut(s)	259, 637
Eco31I	GGTCTC	2 cut(s)	143, 166
Eco32I	GATATC	2 cut(s)	16, 325
Eco53kI	GAGCTC	2 cut(s)	257, 635
Eco57I	CTGAAG	1 cut(s)	314
Eco81I	CCTNAGG	1 cut(s)	684
Eco88I	CYCGRG	1 cut(s)	807
EcoICRI	GAGCTC	2 cut(s)	257, 635
EcoRII	CCWGG	2 cut(s)	623, 781
EcoRV	GATATC	2 cut(s)	16, 325
EcoT38I	GRGCYC	2 cut(s)	259, 637
FaeI	CATG	9 cut(s)	163, 345, 362, 523, 561, 650, 697, 865, 1034
FalI	AAGNNNNNCTT	2 cut(s)	412, 444
FatI	CATG	9 cut(s)	159, 341, 358, 519, 557, 646, 693, 861, 1030
FauI	CCCGC	2 cut(s)	159, 205
Fnu4HI	GCNGC	6 cut(s)	297, 390, 494, 549, 571, 591
FokI	GGATG	4 cut(s)	878, 1055, 1108, 1114
FriOI	GRGCYC	2 cut(s)	259, 637
Fsp4HI	GCNGC	6 cut(s)	297, 390, 494, 549, 571, 591
FspBI	CTAG	1 cut(s)	656
GlaI	GCGC	2 cut(s)	187, 340
GluI	GCNGC	6 cut(s)	297, 390, 494, 549, 571, 591
GsuI	CTGGAG	1 cut(s)	621
HaeIII	GGCC	1 cut(s)	800
HapII	CCGG	1 cut(s)	73
HgaI	GACGC	2 cut(s)	142, 1083
HhaI	GCGC	2 cut(s)	188, 341
Hin1II	CATG	9 cut(s)	163, 345, 362, 523, 561, 650, 697, 865, 1034
Hin6I	GCGC	2 cut(s)	186, 339
HinP1I	GCGC	2 cut(s)	186, 339
HindIII	AAGCTT	1 cut(s)	1006
HinfI	GANTC	4 cut(s)	76, 423, 677, 887
HpaII	CCGG	1 cut(s)	73
Hpy166II	GTNNAC	2 cut(s)	620, 691
Hpy188I	TCNGA	7 cut(s)	216, 303, 313, 483, 535, 843, 916
Hpy188III	TCNNGA	5 cut(s)	457, 638, 683, 1031, 1120
Hpy8I	GTNNAC	2 cut(s)	620, 691
Hpy99I	CGWCG	2 cut(s)	136, 1077
HpyAV	CCTTC	2 cut(s)	233, 338
HpyCH4III	ACNGT	2 cut(s)	501, 531
HpyCH4IV	ACGT	1 cut(s)	950
HpyCH4V	TGCA	5 cut(s)	284, 523, 620, 946, 1090
HpyF10VI	GCNNNNNNNGC	1 cut(s)	386
HpyF3I	CTNAG	8 cut(s)	300, 381, 445, 606, 684, 842, 891, 1009
HpySE526I	ACGT	1 cut(s)	950
Hsp92II	CATG	9 cut(s)	163, 345, 362, 523, 561, 650, 697, 865, 1034
HspAI	GCGC	2 cut(s)	186, 339
Kzo9I	GATC	1 cut(s)	921
LguI	GCTCTTC	1 cut(s)	972
LmnI	GCTCC	5 cut(s)	141, 254, 632, 640, 895
Lsp1109I	GCAGC	5 cut(s)	283, 376, 557, 560, 577
LweI	GCATC	2 cut(s)	838, 952
MaeI	CTAG	1 cut(s)	656
MaeII	ACGT	1 cut(s)	950
MaeIII	GTNAC	3 cut(s)	59, 367, 705
MalI	GATC	1 cut(s)	923
MboI	GATC	1 cut(s)	921
MboII	GAAGA	3 cut(s)	432, 800, 959
MhlI	GDGCHC	3 cut(s)	259, 622, 637
MlsI	TGGCCA	1 cut(s)	800
MluCI	AATT	9 cut(s)	51, 144, 218, 244, 276, 462, 760, 934, 1047
MluNI	TGGCCA	1 cut(s)	800
MlyI	GAGTC	1 cut(s)	896
MmeI	TCCRAC	1 cut(s)	78
Mox20I	TGGCCA	1 cut(s)	800
MscI	TGGCCA	1 cut(s)	800
MseI	TTAA	4 cut(s)	35, 597, 818, 978
MslI	CAYNNNNRTG	1 cut(s)	158
Msp20I	TGGCCA	1 cut(s)	800
MspCI	CTTAAG	1 cut(s)	596
MspI	CCGG	1 cut(s)	73
MspR9I	CCNGG	3 cut(s)	73, 625, 783
MvaI	CCWGG	2 cut(s)	625, 783
MvnI	CGCG	1 cut(s)	166
MwoI	GCNNNNNNNGC	1 cut(s)	386
NciI	CCSGG	1 cut(s)	73
NdeII	GATC	1 cut(s)	921
NheI	GCTAGC	1 cut(s)	655
NlaIII	CATG	9 cut(s)	163, 345, 362, 523, 561, 650, 697, 865, 1034
NlaIV	GGNNCC	1 cut(s)	347
NmuCI	GTSAC	1 cut(s)	705
NspI	RCATGY	3 cut(s)	523, 561, 650
PagI	TCATGA	1 cut(s)	1030
PciI	ACATGT	2 cut(s)	557, 646
PciSI	GCTCTTC	1 cut(s)	972
PfeI	GAWTC	3 cut(s)	76, 423, 677
PkrI	GCNGC	6 cut(s)	298, 391, 495, 550, 572, 592
PleI	GAGTC	1 cut(s)	895
PpsI	GAGTC	1 cut(s)	895
PscI	ACATGT	2 cut(s)	557, 646
PsiI	TTATAA	1 cut(s)	468
Psp124BI	GAGCTC	2 cut(s)	259, 637
Psp1406I	AACGTT	1 cut(s)	950
Psp6I	CCWGG	2 cut(s)	623, 781
PspGI	CCWGG	2 cut(s)	623, 781
PspN4I	GGNNCC	1 cut(s)	347
RsaI	GTAC	3 cut(s)	108, 269, 1071
RsaNI	GTAC	3 cut(s)	107, 268, 1070
RseI	CAYNNNNRTG	1 cut(s)	158
SacI	GAGCTC	2 cut(s)	259, 637
SapI	GCTCTTC	1 cut(s)	972
SaqAI	TTAA	4 cut(s)	35, 597, 818, 978
SatI	GCNGC	6 cut(s)	297, 390, 494, 549, 571, 591
Sau3AI	GATC	1 cut(s)	921
SchI	GAGTC	1 cut(s)	896
ScrFI	CCNGG	3 cut(s)	73, 625, 783
SduI	GDGCHC	3 cut(s)	259, 622, 637
SfaNI	GCATC	2 cut(s)	838, 952
SmiMI	CAYNNNNRTG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	596
SmoI	CTYRAG	1 cut(s)	596
Sse9I	AATT	9 cut(s)	51, 144, 218, 244, 276, 462, 760, 934, 1047
SsiI	CCGC	5 cut(s)	166, 198, 494, 971, 1052
SspI	AATATT	2 cut(s)	211, 856
SspMI	CTAG	1 cut(s)	656
SstI	GAGCTC	2 cut(s)	259, 637
StyD4I	CCNGG	3 cut(s)	71, 623, 781
TaaI	ACNGT	2 cut(s)	501, 531
TaiI	ACGT	1 cut(s)	953
TaqI	TCGA	3 cut(s)	93, 131, 749
TasI	AATT	9 cut(s)	51, 144, 218, 244, 276, 462, 760, 934, 1047
TatI	WGTACW	2 cut(s)	106, 267
TauI	GCSGC	1 cut(s)	496
TfiI	GAWTC	3 cut(s)	76, 423, 677
Tru1I	TTAA	4 cut(s)	35, 597, 818, 978
Tru9I	TTAA	4 cut(s)	35, 597, 818, 978
TscAI	CASTG	1 cut(s)	1092
TseFI	GTSAC	1 cut(s)	705
TseI	GCWGC	5 cut(s)	296, 389, 548, 570, 590
Tsp45I	GTSAC	1 cut(s)	705
TspDTI	ATGAA	4 cut(s)	453, 919, 1019, 1059
TspRI	CASTG	1 cut(s)	1092
Vha464I	CTTAAG	1 cut(s)	596
VneI	GTGCAC	1 cut(s)	618
XapI	RAATTY	2 cut(s)	462, 760
XceI	RCATGY	3 cut(s)	523, 561, 650
XcmI	CCANNNNNNNNNTGG	2 cut(s)	356, 859
XspI	CTAG	1 cut(s)	656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.