Rmu_co8195120.1_g000001

Golgi to ER traffic protein 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8195120.1
OG0009398
Physical Location & Seq
Reverse (-)
261 .. 704
444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8195120.1_g000001.1.cds

Sequence Viewer

Length: 247 bp
gacaatttataaacagtttcctaagatacctgtgccacaacagttgggggatgatgatgacgtgcaacgactttctgaaacacttgggacagcaaaaacatgtgttgaaggatgctcatcattcctaaaagctgctatcaagtggtctgcggagtttggtgcacctaggggtggggctccagaaatacatgttatgctagctaactatatgtactttgaatcttctgaggtggtaggtagcagctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF410

Protein Analysis

81

Amino Acids

8.8

Weight (kDa)

4.91

Isoelectric Point (pI)

48.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 10
AciI CCGC 1 cut(s) 150
AfaI GTAC 1 cut(s) 213
AfiI CCNNNNNNNGG 1 cut(s) 171
AflIII ACRYGT 2 cut(s) 99, 188
AgsI TTSAA 2 cut(s) 108, 219
AjiI CACGTC 1 cut(s) 62
AluBI AGCT 3 cut(s) 132, 201, 244
AluI AGCT 3 cut(s) 132, 201, 244
Alw21I GWGCWC 1 cut(s) 164
Alw44I GTGCAC 1 cut(s) 160
ApaLI GTGCAC 1 cut(s) 160
ApeKI GCWGC 2 cut(s) 132, 241
AspA2I CCTAGG 1 cut(s) 165
AsuNHI GCTAGC 1 cut(s) 197
AvrII CCTAGG 1 cut(s) 165
BaeGI GKGCMC 1 cut(s) 164
BanII GRGCYC 1 cut(s) 179
Bbv12I GWGCWC 1 cut(s) 164
BbvI GCAGC 1 cut(s) 119
BfaI CTAG 2 cut(s) 166, 198
BisI GCNGC 2 cut(s) 133, 242
BlnI CCTAGG 1 cut(s) 165
BlsI GCNGC 2 cut(s) 134, 243
BmgBI CACGTC 1 cut(s) 62
BmiI GGNNCC 1 cut(s) 178
BmsI GCATC 1 cut(s) 102
BmtI GCTAGC 1 cut(s) 201
BpmI CTGGAG 1 cut(s) 163
BsaBI GATNNNNATC 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 165
Bsc4I CCNNNNNNNGG 1 cut(s) 171
Bse8I GATNNNNATC 1 cut(s) 116
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 2 cut(s) 56, 117
BseJI GATNNNNATC 1 cut(s) 116
BseLI CCNNNNNNNGG 1 cut(s) 171
BseMII CTCAG 1 cut(s) 217
BseSI GKGCMC 1 cut(s) 164
BseXI GCAGC 1 cut(s) 119
BsiHKAI GWGCWC 1 cut(s) 164
BslFI GGGAC 1 cut(s) 101
BslI CCNNNNNNNGG 1 cut(s) 171
BsmFI GGGAC 1 cut(s) 101
Bsp1286I GDGCHC 2 cut(s) 164, 179
BspACI CCGC 1 cut(s) 150
BspCNI CTCAG 1 cut(s) 218
BspLI GGNNCC 1 cut(s) 178
BspOI GCTAGC 1 cut(s) 201
BssECI CCNNGG 1 cut(s) 165
BssT1I CCWWGG 1 cut(s) 165
Bst4CI ACNGT 2 cut(s) 16, 43
BstC8I GCNNGC 1 cut(s) 199
BstDEI CTNAG 2 cut(s) 22, 226
BstF5I GGATG 2 cut(s) 56, 117
BstNSI RCATGY 2 cut(s) 103, 192
BstSLI GKGCMC 1 cut(s) 164
BstV1I GCAGC 1 cut(s) 119
BtrI CACGTC 1 cut(s) 62
BtsCI GGATG 2 cut(s) 56, 117
Cac8I GCNNGC 1 cut(s) 199
Csp6I GTAC 1 cut(s) 212
CspCI CAANNNNNGTGG 2 cut(s) 25, 60
CviAII CATG 2 cut(s) 100, 189
CviJI RGCY 4 cut(s) 132, 177, 201, 244
CviKI_1 RGCY 4 cut(s) 132, 177, 201, 244
CviQI GTAC 1 cut(s) 212
DdeI CTNAG 2 cut(s) 22, 226
Eco130I CCWWGG 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 179
EcoT14I CCWWGG 1 cut(s) 165
EcoT38I GRGCYC 1 cut(s) 179
ErhI CCWWGG 1 cut(s) 165
FaeI CATG 2 cut(s) 103, 192
FaiI YATR 6 cut(s) 10, 101, 190, 195, 208, 210
FaqI GGGAC 1 cut(s) 101
FatI CATG 2 cut(s) 99, 188
Fnu4HI GCNGC 2 cut(s) 133, 242
FokI GGATG 2 cut(s) 63, 124
FriOI GRGCYC 1 cut(s) 179
Fsp4HI GCNGC 2 cut(s) 133, 242
FspBI CTAG 2 cut(s) 166, 198
GluI GCNGC 2 cut(s) 133, 242
GsuI CTGGAG 1 cut(s) 163
Hin1II CATG 2 cut(s) 103, 192
HinfI GANTC 1 cut(s) 219
Hpy166II GTNNAC 1 cut(s) 162
Hpy188I TCNGA 2 cut(s) 77, 227
Hpy188III TCNNGA 1 cut(s) 180
Hpy8I GTNNAC 1 cut(s) 162
HpyAV CCTTC 1 cut(s) 102
HpyCH4III ACNGT 2 cut(s) 16, 43
HpyCH4IV ACGT 1 cut(s) 61
HpyCH4V TGCA 2 cut(s) 65, 162
HpyF3I CTNAG 2 cut(s) 22, 226
HpySE526I ACGT 1 cut(s) 61
Hsp92II CATG 2 cut(s) 103, 192
LmnI GCTCC 1 cut(s) 182
LpnPI CCDG 2 cut(s) 43, 193
Lsp1109I GCAGC 1 cut(s) 119
LweI GCATC 1 cut(s) 102
MaeI CTAG 2 cut(s) 166, 198
MaeII ACGT 1 cut(s) 61
MboII GAAGA 1 cut(s) 214
MhlI GDGCHC 2 cut(s) 164, 179
MluCI AATT 1 cut(s) 4
MnlI CCTC 1 cut(s) 221
MspA1I CMGCKG 1 cut(s) 244
NheI GCTAGC 1 cut(s) 197
NlaIII CATG 2 cut(s) 103, 192
NlaIV GGNNCC 1 cut(s) 178
NspI RCATGY 2 cut(s) 103, 192
PciI ACATGT 2 cut(s) 99, 188
PfeI GAWTC 1 cut(s) 219
PkrI GCNGC 2 cut(s) 134, 243
PscI ACATGT 2 cut(s) 99, 188
PsiI TTATAA 1 cut(s) 10
PspN4I GGNNCC 1 cut(s) 178
PvuII CAGCTG 1 cut(s) 244
RsaI GTAC 1 cut(s) 213
RsaNI GTAC 1 cut(s) 212
SatI GCNGC 2 cut(s) 133, 242
SduI GDGCHC 2 cut(s) 164, 179
SetI ASST 8 cut(s) 32, 64, 134, 167, 203, 232, 239, 246
SfaNI GCATC 1 cut(s) 102
SgeI CNNG 9 cut(s) 42, 74, 96, 112, 152, 178, 192, 201, 210
Sse9I AATT 1 cut(s) 4
SsiI CCGC 1 cut(s) 150
SspMI CTAG 2 cut(s) 166, 198
StyI CCWWGG 1 cut(s) 165
TaaI ACNGT 2 cut(s) 16, 43
TaiI ACGT 1 cut(s) 64
TasI AATT 1 cut(s) 4
TatI WGTACW 1 cut(s) 211
TfiI GAWTC 1 cut(s) 219
TseI GCWGC 2 cut(s) 132, 241
VneI GTGCAC 1 cut(s) 160
XceI RCATGY 2 cut(s) 103, 192
XmaJI CCTAGG 1 cut(s) 165
XspI CTAG 2 cut(s) 166, 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.