FvH4_7g23460

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0015693
Physical Location & Seq
Forward (+)
18286942 .. 18288582
1641 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g23460.t1

Sequence Viewer

Length: 1050 bp
ATGTCCACCACCACCGCCACCGCCACCATTTTCCTCCTCCTCCTCCTCCACACCACCCACTCCAAACCCCTCCCCATCCCCCACCTCACCTCCCCCTACCTCAACCCCTCCACCTTCTCCGCCAACTACGACTCCATGGTCAAAAACTTCAGAATCTTCATCTACAAACCCACCCCTCCCTTCACTTATCCCAACCACGTCCAGTCCCTCTTCTACACCTCCCTCCTCGACAGCGACCTCGCCACCAACGTCTCCGACCACGCCCACCTCTTCTTCCTCCCTTTCCCGCCAGATCTCCCCACGCGCTCCCTCGCGCGTCTCATCCGCACCATCCGCACCGACTATCCTTACTGGAACCGCACCCTCGGAGCCGACCACTTCTACCTCTCATGCTCCGGCGTCGGTTACGAATCCGACCGCAACCTCGTCGAGCTCAAAAAGAACTCGATCCAGATCTCATGCTTCCCGACTTCTCCGGGCCAGCTCATCCCTCATAAAGACATCACTCTCCCACCGCTCGCGTCGTCCCACGCGCCGACGGTCAACACGACGACTTTCCTCGGTTATATCCGATCAAATTGGGTGAACGACTCCGCAATAGTCGACGAGTTACGTGTCAACCCGGAGTTTCTGATCGAATCGGAGATTTCGAAGCCGAAGATCCACGCGCAGAGGCTCTCCAGCAGCAAGTTTTGTATATTTGAGTACGGCGCCGGCGACGTGTCCGGGATCGGAGAGGCGTTGACATTTGGGTGCGTTCCCGTGGTGATTACGGACCGTCCGATCCAGGATTTGCCGTTCATGGACGTGCTGAGGTGGCAGGAGATGGCGTTGTTTGTGGGGAGGAGTGGTGGGGCCAAGGAGTTGGAGCGCGTGTTGGTGCGCGCGTGCTGGGAGAGGCATGATCAGATGAGGCGGTTGGGTGCGGAGGCGGGGAAGCATTTGGCATGGAACGCGCCGCCGCGGGCTAAGGATGCGTTTCATACTTTGGTATATCAGCTTTGGTTGCGACGCCACACGATTAGATACGCCCGGCGGGAGACGGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

350

Amino Acids

39.62

Weight (kDa)

8.89

Isoelectric Point (pI)

49.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 48 - 280 2.4e-26 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015693)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g23460
malus_domestica MD01G1140500.v1.1 MD07G1204800.v1.1
prunus_persica Prupe.2G241000_v2.0.a1
pyrus_communis pycom07g19130
rosa_chinensis RchiOBHm_Chr1g0368611
rosa_laevigata RLG00000020781 RLG00000027201
rosa_multiflora Rmu_sc0001791.1_g000003 Rmu_sc0011394.1_g000003
rosa_roxburghii Rroxscaffold_4G00288410
rosa_rugosa Rorug01G0343100
rosa_samantha Rh1AG350400 Rh1BG313700 Rh1CG328300 Rh1DG345100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 137
AccB1I GGYRCC 1 cut(s) 710
AccBSI CCGCTC 1 cut(s) 517
AccI GTMKAC 1 cut(s) 603
AclWI GGATC 4 cut(s) 442, 655, 737, 778
AcuI CTGAAG 1 cut(s) 133
AcyI GRCGYC 3 cut(s) 399, 711, 1012
AfaI GTAC 1 cut(s) 707
AflIII ACRYGT 2 cut(s) 613, 720
AjiI CACGTC 3 cut(s) 199, 721, 808
AjnI CCWGG 1 cut(s) 786
AloI GAACNNNNNNTCC 2 cut(s) 782, 814
AluBI AGCT 3 cut(s) 433, 484, 1000
AluI AGCT 3 cut(s) 433, 484, 1000
Alw21I GWGCWC 1 cut(s) 435
Alw26I GTCTC 3 cut(s) 256, 323, 1034
AlwI GGATC 4 cut(s) 442, 655, 737, 778
AoxI GGCC 2 cut(s) 478, 855
ApeKI GCWGC 1 cut(s) 684
AspLEI GCGC 9 cut(s) 306, 316, 535, 670, 713, 873, 885, 887, 958
AspS9I GGNCC 3 cut(s) 478, 775, 855
AsuC2I CCSGG 4 cut(s) 477, 623, 727, 1033
AsuHPI GGTGA 3 cut(s) 79, 595, 778
AsuII TTCGAA 1 cut(s) 650
AvaII GGWCC 1 cut(s) 775
BanI GGYRCC 1 cut(s) 710
BanII GRGCYC 1 cut(s) 435
Bbv12I GWGCWC 1 cut(s) 435
BbvCI CCTCAGC 1 cut(s) 812
BbvI GCAGC 1 cut(s) 696
BccI CCATC 3 cut(s) 83, 338, 820
BceAI ACGGC 2 cut(s) 724, 781
BcgI CGANNNNNNTGC 2 cut(s) 409, 443
BciT130I CCWGG 1 cut(s) 788
BclI TGATCA 1 cut(s) 904
BcnI CCSGG 4 cut(s) 477, 623, 727, 1033
BcoDI GTCTC 3 cut(s) 256, 323, 1034
BfoI RGCGCY 1 cut(s) 714
BglII AGATCT 2 cut(s) 292, 453
BisI GCNGC 3 cut(s) 685, 959, 962
BlsI GCNGC 3 cut(s) 686, 960, 963
Bme1390I CCNGG 5 cut(s) 477, 623, 727, 788, 1033
Bme18I GGWCC 1 cut(s) 775
BmgBI CACGTC 3 cut(s) 199, 721, 808
BmgT120I GGNCC 3 cut(s) 478, 775, 855
BmiI GGNNCC 4 cut(s) 356, 370, 712, 856
BmrFI CCNGG 5 cut(s) 477, 623, 727, 788, 1033
BmsI GCATC 1 cut(s) 964
BpmI CTGGAG 1 cut(s) 664
Bpu10I CCTNAGC 2 cut(s) 812, 969
Bpu14I TTCGAA 1 cut(s) 650
BpuMI CCSGG 4 cut(s) 477, 623, 727, 1033
BsaAI YACGTR 1 cut(s) 614
BsaBI GATNNNNATC 1 cut(s) 452
BsaHI GRCGYC 3 cut(s) 399, 711, 1012
BsaJI CCNNGG 6 cut(s) 135, 364, 559, 762, 858, 962
Bse118I RCCGGY 1 cut(s) 713
Bse1I ACTGG 2 cut(s) 202, 356
Bse8I GATNNNNATC 1 cut(s) 452
BseBI CCWGG 1 cut(s) 788
BseDI CCNNGG 6 cut(s) 135, 364, 559, 762, 858, 962
BseGI GGATG 5 cut(s) 75, 321, 330, 486, 979
BseJI GATNNNNATC 1 cut(s) 452
BseMII CTCAG 1 cut(s) 803
BseNI ACTGG 2 cut(s) 202, 356
BsePI GCGCGC 1 cut(s) 883
BseRI GAGGAG 6 cut(s) 26, 29, 32, 35, 215, 859
BseXI GCAGC 1 cut(s) 696
BseYI CCCAGC 1 cut(s) 891
Bsh1285I CGRYCG 1 cut(s) 418
BshFI GGCC 2 cut(s) 480, 857
BshNI GGYRCC 1 cut(s) 710
BsiEI CGRYCG 1 cut(s) 418
BsiHKAI GWGCWC 1 cut(s) 435
BsiSI CCGG 6 cut(s) 396, 476, 623, 714, 726, 1033
BslFI GGGAC 2 cut(s) 190, 511
BsmAI GTCTC 3 cut(s) 256, 323, 1034
BsmBI CGTCTC 3 cut(s) 256, 323, 1034
BsmFI GGGAC 2 cut(s) 190, 511
BsnI GGCC 2 cut(s) 480, 857
Bsp119I TTCGAA 1 cut(s) 650
Bsp1286I GDGCHC 1 cut(s) 435
Bsp143I GATC 9 cut(s) 292, 447, 453, 572, 633, 660, 729, 783, 904
Bsp19I CCATGG 1 cut(s) 135
BspANI GGCC 2 cut(s) 480, 857
BspCNI CTCAG 1 cut(s) 804
BspLI GGNNCC 4 cut(s) 356, 370, 712, 856
BspPI GGATC 4 cut(s) 442, 655, 737, 778
BspT104I TTCGAA 1 cut(s) 650
BspT107I GGYRCC 1 cut(s) 710
BsrBI CCGCTC 1 cut(s) 517
BsrFI RCCGGY 1 cut(s) 713
BsrI ACTGG 2 cut(s) 202, 356
BssAI RCCGGY 1 cut(s) 713
BssECI CCNNGG 6 cut(s) 135, 364, 559, 762, 858, 962
BssHII GCGCGC 1 cut(s) 883
BssMI GATC 9 cut(s) 292, 447, 453, 572, 633, 660, 729, 783, 904
BssNI GRCGYC 3 cut(s) 399, 711, 1012
BssT1I CCWWGG 2 cut(s) 135, 858
Bst2UI CCWGG 1 cut(s) 788
Bst4CI ACNGT 2 cut(s) 541, 779
Bst6I CTCTTC 2 cut(s) 215, 275
BstACI GRCGYC 3 cut(s) 399, 711, 1012
BstBAI YACGTR 1 cut(s) 614
BstBI TTCGAA 1 cut(s) 650
BstC8I GCNNGC 6 cut(s) 482, 519, 715, 885, 889, 966
BstDEI CTNAG 2 cut(s) 812, 969
BstDSI CCRYGG 3 cut(s) 135, 762, 962
BstF5I GGATG 5 cut(s) 75, 321, 330, 486, 979
BstH2I RGCGCY 1 cut(s) 714
BstHHI GCGC 9 cut(s) 306, 316, 535, 670, 713, 873, 885, 887, 958
BstKTI GATC 9 cut(s) 295, 450, 456, 575, 636, 663, 732, 786, 907
BstMAI GTCTC 3 cut(s) 256, 323, 1034
BstMBI GATC 9 cut(s) 292, 447, 453, 572, 633, 660, 729, 783, 904
BstMCI CGRYCG 1 cut(s) 418
BstMWI GCNNNNNNNGC 5 cut(s) 333, 817, 953, 974, 1006
BstNI CCWGG 1 cut(s) 788
BstSCI CCNGG 5 cut(s) 475, 621, 725, 786, 1031
BstV1I GCAGC 1 cut(s) 696
BstX2I RGATCY 3 cut(s) 292, 453, 660
BstXI CCANNNNNNTGG 1 cut(s) 865
BstYI RGATCY 3 cut(s) 292, 453, 660
BsuRI GGCC 2 cut(s) 480, 857
BtgI CCRYGG 3 cut(s) 135, 762, 962
BtrI CACGTC 3 cut(s) 199, 721, 808
BtsCI GGATG 5 cut(s) 75, 321, 330, 486, 979
Cac8I GCNNGC 6 cut(s) 482, 519, 715, 885, 889, 966
CfoI GCGC 9 cut(s) 306, 316, 535, 670, 713, 873, 885, 887, 958
Cfr10I RCCGGY 1 cut(s) 713
Cfr13I GGNCC 3 cut(s) 478, 775, 855
Cfr42I CCGCGG 1 cut(s) 965
CpoI CGGWCCG 1 cut(s) 775
CseI GACGC 4 cut(s) 305, 388, 510, 1020
Csp6I GTAC 1 cut(s) 706
CspI CGGWCCG 1 cut(s) 775
CviAII CATG 6 cut(s) 136, 390, 459, 802, 902, 948
CviJI RGCY 9 cut(s) 371, 433, 480, 484, 655, 676, 857, 968, 1000
CviKI_1 RGCY 9 cut(s) 371, 433, 480, 484, 655, 676, 857, 968, 1000
CviQI GTAC 1 cut(s) 706
DdeI CTNAG 2 cut(s) 812, 969
DinI GGCGCC 1 cut(s) 712
DpnI GATC 9 cut(s) 294, 449, 455, 574, 635, 662, 731, 785, 906
DpnII GATC 9 cut(s) 292, 447, 453, 572, 633, 660, 729, 783, 904
DrdI GACNNNNNNGTC 1 cut(s) 137
DseDI GACNNNNNNGTC 1 cut(s) 137
Eam1104I CTCTTC 2 cut(s) 215, 275
EarI CTCTTC 2 cut(s) 215, 275
EciI GGCGGA 1 cut(s) 109
Ecl136II GAGCTC 1 cut(s) 433
Eco130I CCWWGG 2 cut(s) 135, 858
Eco24I GRGCYC 1 cut(s) 435
Eco47I GGWCC 1 cut(s) 775
Eco53kI GAGCTC 1 cut(s) 433
Eco57I CTGAAG 1 cut(s) 133
EcoICRI GAGCTC 1 cut(s) 433
EcoRII CCWGG 1 cut(s) 786
EcoT14I CCWWGG 2 cut(s) 135, 858
EcoT38I GRGCYC 1 cut(s) 435
EgeI GGCGCC 1 cut(s) 712
EheI GGCGCC 1 cut(s) 712
ErhI CCWWGG 2 cut(s) 135, 858
Esp3I CGTCTC 3 cut(s) 256, 323, 1034
FaeI CATG 6 cut(s) 139, 393, 462, 805, 905, 951
FaqI GGGAC 2 cut(s) 190, 511
FatI CATG 6 cut(s) 135, 389, 458, 801, 901, 947
FauI CCCGC 4 cut(s) 294, 925, 957, 1029
FbaI TGATCA 1 cut(s) 904
FblI GTMKAC 1 cut(s) 603
Fnu4HI GCNGC 3 cut(s) 685, 959, 962
FokI GGATG 5 cut(s) 62, 308, 317, 473, 986
FriOI GRGCYC 1 cut(s) 435
Fsp4HI GCNGC 3 cut(s) 685, 959, 962
GlaI GCGC 9 cut(s) 305, 315, 534, 669, 712, 872, 884, 886, 957
GluI GCNGC 3 cut(s) 685, 959, 962
GsaI CCCAGC 1 cut(s) 895
GsuI CTGGAG 1 cut(s) 664
HaeII RGCGCY 1 cut(s) 714
HaeIII GGCC 2 cut(s) 480, 857
HapII CCGG 6 cut(s) 396, 476, 623, 714, 726, 1033
HgaI GACGC 4 cut(s) 305, 388, 510, 1020
HhaI GCGC 9 cut(s) 306, 316, 535, 670, 713, 873, 885, 887, 958
Hin1I GRCGYC 3 cut(s) 399, 711, 1012
Hin1II CATG 6 cut(s) 139, 393, 462, 805, 905, 951
Hin6I GCGC 9 cut(s) 304, 314, 533, 668, 711, 871, 883, 885, 956
HinP1I GCGC 9 cut(s) 304, 314, 533, 668, 711, 871, 883, 885, 956
HincII GTYRAC 4 cut(s) 544, 604, 619, 744
HindII GTYRAC 4 cut(s) 544, 604, 619, 744
HinfI GANTC 5 cut(s) 131, 153, 410, 590, 638
HpaII CCGG 6 cut(s) 396, 476, 623, 714, 726, 1033
HphI GGTGA 3 cut(s) 79, 595, 778
Hpy166II GTNNAC 6 cut(s) 6, 544, 586, 604, 619, 744
Hpy188III TCNNGA 2 cut(s) 451, 466
Hpy8I GTNNAC 6 cut(s) 6, 544, 586, 604, 619, 744
Hpy99I CGWCG 8 cut(s) 404, 431, 526, 541, 553, 608, 722, 1014
HpyAV CCTTC 2 cut(s) 124, 190
HpyCH4III ACNGT 2 cut(s) 541, 779
HpyCH4IV ACGT 5 cut(s) 198, 249, 613, 720, 807
HpyF10VI GCNNNNNNNGC 5 cut(s) 333, 817, 953, 974, 1006
HpyF3I CTNAG 2 cut(s) 812, 969
HpySE526I ACGT 5 cut(s) 198, 249, 613, 720, 807
Hsp92I GRCGYC 3 cut(s) 399, 711, 1012
Hsp92II CATG 6 cut(s) 139, 393, 462, 805, 905, 951
HspAI GCGC 9 cut(s) 304, 314, 533, 668, 711, 871, 883, 885, 956
KasI GGCGCC 1 cut(s) 710
KroI GCCGGC 1 cut(s) 713
KroNI GCCGGC 1 cut(s) 715
Ksp22I TGATCA 1 cut(s) 904
KspI CCGCGG 1 cut(s) 965
Kzo9I GATC 9 cut(s) 292, 447, 453, 572, 633, 660, 729, 783, 904
LmnI GCTCC 4 cut(s) 311, 368, 398, 868
Lsp1109I GCAGC 1 cut(s) 696
LweI GCATC 1 cut(s) 964
MaeII ACGT 5 cut(s) 198, 249, 613, 720, 807
MaeIII GTNAC 2 cut(s) 404, 609
MalI GATC 9 cut(s) 294, 449, 455, 574, 635, 662, 731, 785, 906
MbiI CCGCTC 1 cut(s) 517
MboI GATC 9 cut(s) 292, 447, 453, 572, 633, 660, 729, 783, 904
MboII GAAGA 5 cut(s) 148, 202, 262, 265, 670
MflI RGATCY 3 cut(s) 292, 453, 660
MhlI GDGCHC 1 cut(s) 435
MluCI AATT 1 cut(s) 577
Mly113I GGCGCC 1 cut(s) 711
MlyI GAGTC 2 cut(s) 125, 584
MmeI TCCRAC 3 cut(s) 279, 438, 846
MreI CGCCGGCG 1 cut(s) 713
MroNI GCCGGC 1 cut(s) 713
MslI CAYNNNNRTG 2 cut(s) 751, 806
MspA1I CMGCKG 1 cut(s) 964
MspI CCGG 6 cut(s) 396, 476, 623, 714, 726, 1033
MspR9I CCNGG 5 cut(s) 477, 623, 727, 788, 1033
MvaI CCWGG 1 cut(s) 788
MwoI GCNNNNNNNGC 5 cut(s) 333, 817, 953, 974, 1006
NaeI GCCGGC 1 cut(s) 715
NarI GGCGCC 1 cut(s) 711
NciI CCSGG 4 cut(s) 477, 623, 727, 1033
NcoI CCATGG 1 cut(s) 135
NdeII GATC 9 cut(s) 292, 447, 453, 572, 633, 660, 729, 783, 904
NgoMIV GCCGGC 1 cut(s) 713
NlaIII CATG 6 cut(s) 139, 393, 462, 805, 905, 951
NlaIV GGNNCC 4 cut(s) 356, 370, 712, 856
NspV TTCGAA 1 cut(s) 650
PauI GCGCGC 1 cut(s) 883
PcsI WCGNNNNNNNCGW 5 cut(s) 246, 545, 647, 714, 779
PdiI GCCGGC 1 cut(s) 715
PfeI GAWTC 3 cut(s) 153, 410, 638
PfoI TCCNGGA 2 cut(s) 725, 786
PkrI GCNGC 3 cut(s) 686, 960, 963
PleI GAGTC 2 cut(s) 125, 584
PluTI GGCGCC 1 cut(s) 714
PpsI GAGTC 2 cut(s) 125, 584
Ppu21I YACGTR 1 cut(s) 614
Psp124BI GAGCTC 1 cut(s) 435
Psp6I CCWGG 1 cut(s) 786
PspFI CCCAGC 1 cut(s) 891
PspGI CCWGG 1 cut(s) 786
PspN4I GGNNCC 4 cut(s) 356, 370, 712, 856
PspPI GGNCC 3 cut(s) 478, 775, 855
PsuI RGATCY 3 cut(s) 292, 453, 660
PteI GCGCGC 1 cut(s) 883
RsaI GTAC 1 cut(s) 707
RsaNI GTAC 1 cut(s) 706
RseI CAYNNNNRTG 2 cut(s) 751, 806
Rsr2I CGGWCCG 1 cut(s) 775
RsrII CGGWCCG 1 cut(s) 775
SacI GAGCTC 1 cut(s) 435
SacII CCGCGG 1 cut(s) 965
SalI GTCGAC 1 cut(s) 602
SatI GCNGC 3 cut(s) 685, 959, 962
Sau3AI GATC 9 cut(s) 292, 447, 453, 572, 633, 660, 729, 783, 904
Sau96I GGNCC 3 cut(s) 478, 775, 855
SchI GAGTC 2 cut(s) 125, 584
ScrFI CCNGG 5 cut(s) 477, 623, 727, 788, 1033
SduI GDGCHC 1 cut(s) 435
SfaNI GCATC 1 cut(s) 964
SfoI GGCGCC 1 cut(s) 712
Sfr303I CCGCGG 1 cut(s) 965
SfuI TTCGAA 1 cut(s) 650
SgrAI CRCCGGYG 1 cut(s) 713
SgrBI CCGCGG 1 cut(s) 965
SinI GGWCC 1 cut(s) 775
SmiMI CAYNNNNRTG 2 cut(s) 751, 806
Sse9I AATT 1 cut(s) 577
SspDI GGCGCC 1 cut(s) 710
SstI GAGCTC 1 cut(s) 435
StyD4I CCNGG 5 cut(s) 475, 621, 725, 786, 1031
StyI CCWWGG 2 cut(s) 135, 858
TaaI ACNGT 2 cut(s) 541, 779
TaiI ACGT 5 cut(s) 201, 252, 616, 723, 810
TaqI TCGA 6 cut(s) 228, 429, 446, 603, 636, 650
TasI AATT 1 cut(s) 577
TauI GCSGC 2 cut(s) 961, 964
TfiI GAWTC 3 cut(s) 153, 410, 638
TseI GCWGC 1 cut(s) 684
TspDTI ATGAA 3 cut(s) 148, 790, 971
TspGWI ACGGA 1 cut(s) 788
VpaK11BI GGWCC 1 cut(s) 775
XmiI GTMKAC 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.