MD07G1204800.v1.1

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0015693
Physical Location & Seq
Forward (+)
28216751 .. 28217800
1050 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1204800.v1.1.491

Sequence Viewer

Length: 1050 bp
ATGTCCACCACCTCCATATTCCGCCTACTCCACCTCCTACTCCTCCAATTCTCTCTTTCCTCCGTCCTCGCCGCCCACCCCAAACCCCTCACTTCCCCCTACCTTTCACCCGCCACGATCCACCCAAATTACCAAAACATGTTCAAATTCTTCAAGATCTTCATCTACAACCCAAACAGCACCTTCCCCTTCACCTCCCCATCCCAATCGCTCTTCTACACGCGCCTCCAGGACAGCCACTTCCCCACCGAAAACCCTGAAAAAGCCCACCTCTTCTTCGTCCCCTTCCCTTCCGACCTCCCCCCGCGCTCCGTCGCGCGCCTCATCAGATCCCTCCGCTCCGAGCTTCCCTACTGGAACCGCACCCTCGGCGCCGACCATTTCTACCTCTCATGCGCCGGCATCGGGTACGAATCGGACCGGAATCTCGTCGAGCTCAAGAAAAACTCGGTCCAGATCTCGTGCTTCCCGACGCCGGCCGGTAAGTTTATCCCCCACAAGGACATTTCGCTTCCGCCGGTCCCGAGCACTCCCGCGCCGACGAACAACACGGCTAGTATCTTGGGGTACGCCAGGTTCGATTGGGTCAAGGAGTCAACGTTAGTCAACCAATTGAGCAGCGACCCCGATTTTCTGATCGAATCCAAGCCGTCCGATCCCAATACTTTCGCGGACAGACTCGGCGGGAGTAAGTTCTGTTTGTTCGAGTACAAAGGAGGCGATGTGTCGGGGATCGGGGAGGCGCTGCGGTTCGGTTGCGTGCCGGTGGTGATCACCGACCGTCCGATCCAGGACCTGCCGTTCTCGGACGTGCTGAGGTGGCAGGAGATCGCGGTGTTCGTGAGACGTAGTGGAGGGGCAGTGAGGGAGCTGAAGCGCGTGTTGGGGCGCGCGTGCTGGGAGCGGCACGAGAAGATGAGGGAGTTGGGTGTGGCTGCGAGTCGGCACTTTATGTGGAACGAGACACCGGAGCCGTTCGATGCGTTTTCTACGTTGATGTATCAGCTGTGGCTGAGACGGCACACCGTTAGATACGTCAGGAGAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

350

Amino Acids

39.88

Weight (kDa)

9.25

Isoelectric Point (pI)

64.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 50 - 283 1.2e-26 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015693)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g23460
malus_domestica MD01G1140500.v1.1 MD07G1204800.v1.1
prunus_persica Prupe.2G241000_v2.0.a1
pyrus_communis pycom07g19130
rosa_chinensis RchiOBHm_Chr1g0368611
rosa_laevigata RLG00000020781 RLG00000027201
rosa_multiflora Rmu_sc0001791.1_g000003 Rmu_sc0011394.1_g000003
rosa_roxburghii Rroxscaffold_4G00288410
rosa_rugosa Rorug01G0343100
rosa_samantha Rh1AG350400 Rh1BG313700 Rh1CG328300 Rh1DG345100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 804
AccB1I GGYRCC 1 cut(s) 371
AccBSI CCGCTC 2 cut(s) 339, 904
AclI AACGTT 1 cut(s) 599
AclWI GGATC 5 cut(s) 112, 324, 650, 740, 781
AcoI YGGCCR 1 cut(s) 477
AcsI RAATTY 1 cut(s) 146
AcuI CTGAAG 1 cut(s) 893
AcyI GRCGYC 2 cut(s) 372, 473
AfaI GTAC 3 cut(s) 410, 569, 710
AfiI CCNNNNNNNGG 3 cut(s) 405, 475, 499
AflIII ACRYGT 1 cut(s) 138
AgsI TTSAA 2 cut(s) 145, 154
AjiI CACGTC 1 cut(s) 811
AjnI CCWGG 3 cut(s) 228, 572, 789
AjuI GAANNNNNNNTTGG 2 cut(s) 866, 898
AloI GAACNNNNNNTCC 2 cut(s) 785, 817
AluBI AGCT 4 cut(s) 346, 436, 871, 1006
AluI AGCT 4 cut(s) 346, 436, 871, 1006
Alw21I GWGCWC 2 cut(s) 438, 530
Alw26I GTCTC 3 cut(s) 838, 956, 1009
AlwI GGATC 5 cut(s) 112, 324, 650, 740, 781
AlwNI CAGNNNCTG 1 cut(s) 796
Ama87I CYCGRG 1 cut(s) 523
AoxI GGCC 1 cut(s) 477
ApeKI GCWGC 3 cut(s) 618, 745, 935
ApoI RAATTY 1 cut(s) 146
AspS9I GGNCC 4 cut(s) 418, 451, 520, 793
AsuHPI GGTGA 4 cut(s) 99, 184, 766, 781
AvaI CYCGRG 1 cut(s) 523
AvaII GGWCC 4 cut(s) 418, 451, 520, 793
BanI GGYRCC 1 cut(s) 371
BanII GRGCYC 1 cut(s) 438
BauI CACGAG 2 cut(s) 460, 908
Bbv12I GWGCWC 2 cut(s) 438, 530
BbvCI CCTCAGC 1 cut(s) 815
BbvI GCAGC 3 cut(s) 630, 732, 922
BccI CCATC 1 cut(s) 208
BceAI ACGGC 5 cut(s) 567, 634, 784, 958, 1034
BciT130I CCWGG 3 cut(s) 230, 574, 791
BclI TGATCA 1 cut(s) 771
BcoDI GTCTC 3 cut(s) 838, 956, 1009
BfaI CTAG 1 cut(s) 555
BfoI RGCGCY 2 cut(s) 375, 746
BfuAI ACCTGC 1 cut(s) 804
BglII AGATCT 2 cut(s) 156, 456
BisI GCNGC 5 cut(s) 72, 619, 746, 905, 936
BlsI GCNGC 5 cut(s) 73, 620, 747, 906, 937
Bme1390I CCNGG 3 cut(s) 230, 574, 791
Bme18I GGWCC 4 cut(s) 418, 451, 520, 793
BmeT110I CYCGRG 1 cut(s) 523
BmgBI CACGTC 1 cut(s) 811
BmgT120I GGNCC 4 cut(s) 418, 451, 520, 793
BmiI GGNNCC 4 cut(s) 359, 373, 522, 972
BmrFI CCNGG 3 cut(s) 230, 574, 791
BmsI GCATC 2 cut(s) 411, 970
BpmI CTGGAG 1 cut(s) 212
Bpu10I CCTNAGC 1 cut(s) 815
BpuEI CTTGAG 1 cut(s) 422
BsaBI GATNNNNATC 1 cut(s) 161
BsaHI GRCGYC 2 cut(s) 372, 473
BsaJI CCNNGG 1 cut(s) 367
BsaWI WCCGGW 2 cut(s) 420, 967
BsaXI ACNNNNNCTCC 8 cut(s) 18, 48, 584, 614, 708, 738, 846, 876
Bsc4I CCNNNNNNNGG 3 cut(s) 405, 475, 499
Bse118I RCCGGY 5 cut(s) 398, 475, 479, 517, 763
Bse1I ACTGG 1 cut(s) 359
Bse8I GATNNNNATC 1 cut(s) 161
BseBI CCWGG 3 cut(s) 230, 574, 791
BseDI CCNNGG 1 cut(s) 367
BseGI GGATG 1 cut(s) 200
BseJI GATNNNNATC 1 cut(s) 161
BseLI CCNNNNNNNGG 3 cut(s) 405, 475, 499
BseMII CTCAG 2 cut(s) 806, 1004
BseNI ACTGG 1 cut(s) 359
BsePI GCGCGC 2 cut(s) 317, 889
BseRI GAGGAG 1 cut(s) 32
BseX3I CGGCCG 1 cut(s) 477
BseXI GCAGC 3 cut(s) 630, 732, 922
BseYI CCCAGC 1 cut(s) 897
Bsh1285I CGRYCG 2 cut(s) 480, 781
BshFI GGCC 1 cut(s) 479
BshNI GGYRCC 1 cut(s) 371
BsiEI CGRYCG 2 cut(s) 480, 781
BsiHKAI GWGCWC 2 cut(s) 438, 530
BsiHKCI CYCGRG 1 cut(s) 523
BsiSI CCGG 7 cut(s) 399, 421, 476, 480, 518, 764, 968
BslFI GGGAC 2 cut(s) 266, 506
BslI CCNNNNNNNGG 3 cut(s) 405, 475, 499
BsmAI GTCTC 3 cut(s) 838, 956, 1009
BsmBI CGTCTC 2 cut(s) 838, 1009
BsmFI GGGAC 2 cut(s) 266, 506
BsnI GGCC 1 cut(s) 479
BsoBI CYCGRG 1 cut(s) 523
Bsp1286I GDGCHC 2 cut(s) 438, 530
BspANI GGCC 1 cut(s) 479
BspCNI CTCAG 2 cut(s) 807, 1005
BspLI GGNNCC 4 cut(s) 359, 373, 522, 972
BspMI ACCTGC 1 cut(s) 804
BspPI GGATC 5 cut(s) 112, 324, 650, 740, 781
BspQI GCTCTTC 1 cut(s) 218
BspT107I GGYRCC 1 cut(s) 371
BsrBI CCGCTC 2 cut(s) 339, 904
BsrFI RCCGGY 5 cut(s) 398, 475, 479, 517, 763
BsrI ACTGG 1 cut(s) 359
BssAI RCCGGY 5 cut(s) 398, 475, 479, 517, 763
BssECI CCNNGG 1 cut(s) 367
BssHII GCGCGC 2 cut(s) 317, 889
BssNI GRCGYC 2 cut(s) 372, 473
BssSI CACGAG 2 cut(s) 460, 908
Bst2BI CACGAG 2 cut(s) 460, 908
Bst2UI CCWGG 3 cut(s) 230, 574, 791
Bst4CI ACNGT 2 cut(s) 782, 1027
Bst6I CTCTTC 2 cut(s) 218, 278
BstACI GRCGYC 2 cut(s) 372, 473
BstC8I GCNNGC 6 cut(s) 319, 400, 477, 761, 891, 895
BstDEI CTNAG 2 cut(s) 815, 1013
BstF5I GGATG 1 cut(s) 200
BstH2I RGCGCY 2 cut(s) 375, 746
BstMAI GTCTC 3 cut(s) 838, 956, 1009
BstMCI CGRYCG 2 cut(s) 480, 781
BstMWI GCNNNNNNNGC 3 cut(s) 369, 820, 1018
BstNI CCWGG 3 cut(s) 230, 574, 791
BstNSI RCATGY 1 cut(s) 142
BstSCI CCNGG 3 cut(s) 228, 572, 789
BstV1I GCAGC 3 cut(s) 630, 732, 922
BstX2I RGATCY 3 cut(s) 156, 329, 456
BstYI RGATCY 3 cut(s) 156, 329, 456
BstZI CGGCCG 1 cut(s) 477
BsuRI GGCC 1 cut(s) 479
BtgZI GCGATG 1 cut(s) 735
BtrI CACGTC 1 cut(s) 811
BtsCI GGATG 1 cut(s) 200
BtsI GCAGTG 1 cut(s) 867
BtsIMutI CAGTG 1 cut(s) 867
BveI ACCTGC 1 cut(s) 804
Cac8I GCNNGC 6 cut(s) 319, 400, 477, 761, 891, 895
CaiI CAGNNNCTG 1 cut(s) 796
Cfr10I RCCGGY 5 cut(s) 398, 475, 479, 517, 763
Cfr13I GGNCC 4 cut(s) 418, 451, 520, 793
CpoI CGGWCCG 1 cut(s) 418
CseI GACGC 1 cut(s) 481
Csp6I GTAC 3 cut(s) 409, 568, 709
CspI CGGWCCG 1 cut(s) 418
CviAII CATG 2 cut(s) 139, 393
CviQI GTAC 3 cut(s) 409, 568, 709
DdeI CTNAG 2 cut(s) 815, 1013
DinI GGCGCC 1 cut(s) 373
EaeI YGGCCR 1 cut(s) 477
EagI CGGCCG 1 cut(s) 477
Eam1104I CTCTTC 2 cut(s) 218, 278
EarI CTCTTC 2 cut(s) 218, 278
EciI GGCGGA 2 cut(s) 11, 504
Ecl136II GAGCTC 1 cut(s) 436
EclXI CGGCCG 1 cut(s) 477
Eco24I GRGCYC 1 cut(s) 438
Eco47I GGWCC 4 cut(s) 418, 451, 520, 793
Eco52I CGGCCG 1 cut(s) 477
Eco53kI GAGCTC 1 cut(s) 436
Eco57I CTGAAG 1 cut(s) 893
Eco88I CYCGRG 1 cut(s) 523
EcoICRI GAGCTC 1 cut(s) 436
EcoO109I RGGNCCY 1 cut(s) 793
EcoRII CCWGG 3 cut(s) 228, 572, 789
EcoT38I GRGCYC 1 cut(s) 438
EgeI GGCGCC 1 cut(s) 373
EheI GGCGCC 1 cut(s) 373
Esp3I CGTCTC 2 cut(s) 838, 1009
FaeI CATG 2 cut(s) 142, 396
FaiI YATR 4 cut(s) 17, 140, 394, 953
FaqI GGGAC 2 cut(s) 266, 506
FatI CATG 2 cut(s) 138, 392
FauI CCCGC 4 cut(s) 118, 312, 541, 677
FbaI TGATCA 1 cut(s) 771
Fnu4HI GCNGC 5 cut(s) 72, 619, 746, 905, 936
FokI GGATG 1 cut(s) 187
FriOI GRGCYC 1 cut(s) 438
Fsp4HI GCNGC 5 cut(s) 72, 619, 746, 905, 936
FspBI CTAG 1 cut(s) 555
GluI GCNGC 5 cut(s) 72, 619, 746, 905, 936
GsaI CCCAGC 1 cut(s) 901
GsuI CTGGAG 1 cut(s) 212
HaeII RGCGCY 2 cut(s) 375, 746
HaeIII GGCC 1 cut(s) 479
HapII CCGG 7 cut(s) 399, 421, 476, 480, 518, 764, 968
HgaI GACGC 1 cut(s) 481
Hin1I GRCGYC 2 cut(s) 372, 473
Hin1II CATG 2 cut(s) 142, 396
HincII GTYRAC 2 cut(s) 597, 607
HindII GTYRAC 2 cut(s) 597, 607
HinfI GANTC 6 cut(s) 413, 424, 593, 641, 678, 940
HpaII CCGG 7 cut(s) 399, 421, 476, 480, 518, 764, 968
HphI GGTGA 4 cut(s) 99, 184, 766, 781
Hpy166II GTNNAC 3 cut(s) 6, 597, 607
Hpy188I TCNGA 8 cut(s) 295, 329, 343, 418, 636, 655, 786, 808
Hpy188III TCNNGA 7 cut(s) 154, 439, 454, 469, 523, 841, 1039
Hpy8I GTNNAC 3 cut(s) 6, 597, 607
Hpy99I CGWCG 4 cut(s) 317, 434, 475, 544
HpyAV CCTTC 4 cut(s) 193, 199, 295, 300
HpyCH4III ACNGT 2 cut(s) 782, 1027
HpyCH4IV ACGT 5 cut(s) 599, 810, 847, 992, 1035
HpyF10VI GCNNNNNNNGC 3 cut(s) 369, 820, 1018
HpyF3I CTNAG 2 cut(s) 815, 1013
HpySE526I ACGT 5 cut(s) 599, 810, 847, 992, 1035
Hsp92I GRCGYC 2 cut(s) 372, 473
Hsp92II CATG 2 cut(s) 142, 396
KasI GGCGCC 1 cut(s) 371
KroI GCCGGC 2 cut(s) 398, 475
KroNI GCCGGC 2 cut(s) 400, 477
Ksp22I TGATCA 1 cut(s) 771
LguI GCTCTTC 1 cut(s) 218
LmnI GCTCC 5 cut(s) 314, 344, 868, 901, 970
Lsp1109I GCAGC 3 cut(s) 630, 732, 922
LweI GCATC 2 cut(s) 411, 970
MaeI CTAG 1 cut(s) 555
MaeII ACGT 5 cut(s) 599, 810, 847, 992, 1035
MbiI CCGCTC 2 cut(s) 339, 904
MboII GAAGA 6 cut(s) 142, 151, 205, 265, 268, 925
MfeI CAATTG 1 cut(s) 611
MflI RGATCY 3 cut(s) 156, 329, 456
MhlI GDGCHC 2 cut(s) 438, 530
MluCI AATT 4 cut(s) 47, 127, 146, 611
Mly113I GGCGCC 1 cut(s) 372
MlyI GAGTC 3 cut(s) 602, 672, 949
MmeI TCCRAC 1 cut(s) 318
MroNI GCCGGC 2 cut(s) 398, 475
MspA1I CMGCKG 1 cut(s) 1006
MspI CCGG 7 cut(s) 399, 421, 476, 480, 518, 764, 968
MspR9I CCNGG 3 cut(s) 230, 574, 791
MunI CAATTG 1 cut(s) 611
MvaI CCWGG 3 cut(s) 230, 574, 791
MwoI GCNNNNNNNGC 3 cut(s) 369, 820, 1018
NaeI GCCGGC 2 cut(s) 400, 477
NarI GGCGCC 1 cut(s) 372
NgoMIV GCCGGC 2 cut(s) 398, 475
NlaIII CATG 2 cut(s) 142, 396
NlaIV GGNNCC 4 cut(s) 359, 373, 522, 972
NmeAIII GCCGAG 2 cut(s) 348, 660
NspI RCATGY 1 cut(s) 142
PauI GCGCGC 2 cut(s) 317, 889
PciI ACATGT 1 cut(s) 138
PciSI GCTCTTC 1 cut(s) 218
PcsI WCGNNNNNNNCGW 3 cut(s) 467, 576, 837
PdiI GCCGGC 2 cut(s) 400, 477
PfeI GAWTC 3 cut(s) 413, 424, 641
PfoI TCCNGGA 2 cut(s) 228, 789
PkrI GCNGC 5 cut(s) 73, 620, 747, 906, 937
PleI GAGTC 3 cut(s) 601, 672, 948
PluTI GGCGCC 1 cut(s) 375
PpsI GAGTC 3 cut(s) 601, 672, 948
PpuMI RGGWCCY 1 cut(s) 793
PscI ACATGT 1 cut(s) 138
Psp124BI GAGCTC 1 cut(s) 438
Psp1406I AACGTT 1 cut(s) 599
Psp5II RGGWCCY 1 cut(s) 793
Psp6I CCWGG 3 cut(s) 228, 572, 789
PspFI CCCAGC 1 cut(s) 897
PspGI CCWGG 3 cut(s) 228, 572, 789
PspN4I GGNNCC 4 cut(s) 359, 373, 522, 972
PspPI GGNCC 4 cut(s) 418, 451, 520, 793
PspPPI RGGWCCY 1 cut(s) 793
PsrI GAACNNNNNNTAC 2 cut(s) 560, 592
PstNI CAGNNNCTG 1 cut(s) 796
PsuI RGATCY 3 cut(s) 156, 329, 456
PteI GCGCGC 2 cut(s) 317, 889
PvuII CAGCTG 1 cut(s) 1006
RsaI GTAC 3 cut(s) 410, 569, 710
RsaNI GTAC 3 cut(s) 409, 568, 709
Rsr2I CGGWCCG 1 cut(s) 418
RsrII CGGWCCG 1 cut(s) 418
SacI GAGCTC 1 cut(s) 438
SapI GCTCTTC 1 cut(s) 218
SatI GCNGC 5 cut(s) 72, 619, 746, 905, 936
Sau96I GGNCC 4 cut(s) 418, 451, 520, 793
SchI GAGTC 3 cut(s) 602, 672, 949
ScrFI CCNGG 3 cut(s) 230, 574, 791
SduI GDGCHC 2 cut(s) 438, 530
SfaNI GCATC 2 cut(s) 411, 970
SfoI GGCGCC 1 cut(s) 373
SinI GGWCC 4 cut(s) 418, 451, 520, 793
SmlI CTYRAG 1 cut(s) 437
SmoI CTYRAG 1 cut(s) 437
Sse9I AATT 4 cut(s) 47, 127, 146, 611
SspDI GGCGCC 1 cut(s) 371
SspMI CTAG 1 cut(s) 555
SstI GAGCTC 1 cut(s) 438
StyD4I CCNGG 3 cut(s) 228, 572, 789
TaaI ACNGT 2 cut(s) 782, 1027
TaiI ACGT 5 cut(s) 602, 813, 850, 995, 1038
TaqI TCGA 5 cut(s) 432, 579, 639, 705, 978
TaqII GACCGA 1 cut(s) 439
TasI AATT 4 cut(s) 47, 127, 146, 611
TatI WGTACW 1 cut(s) 708
TauI GCSGC 2 cut(s) 74, 907
TfiI GAWTC 3 cut(s) 413, 424, 641
TscAI CASTG 1 cut(s) 867
TseI GCWGC 3 cut(s) 618, 745, 935
TspDTI ATGAA 1 cut(s) 151
TspGWI ACGGA 2 cut(s) 52, 301
TspRI CASTG 1 cut(s) 867
VpaK11BI GGWCC 4 cut(s) 418, 451, 520, 793
XapI RAATTY 1 cut(s) 146
XceI RCATGY 1 cut(s) 142
XspI CTAG 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.