MD01G1140500.v1.1

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0015693
Physical Location & Seq
Forward (+)
24980632 .. 24981687
1056 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1140500.v1.1.491

Sequence Viewer

Length: 1056 bp
ATGTCCACCGCCTCTATATTACGGCTTCTCCTCCTCCACTTCTCTCTCTCCACCGTCCTCGCCGCTCATTCCCAGCCCCTCACTTCCCCCTACCTCTCACCCAACACAATTCACCCAAATTACCAAAACATGTTCAATTCCTTCAAAATCTTCATCTACAACTCAAACAGCACCTTCCCCTTTACCTCCCCATCCCAATCGCTCTTCTACACGCGCCTCCAGGACAGCCACTTCCCCACCGAAAACCCCGAAAAAGCCCATCTCTTCTTCGTCCCCTTCCCCTCCGACCTCCCCCCGCGCTCCGTCTCGCGCCTCATCAGATCGCTCCGCACCGAGCTTCCCTACTGGAACCGCACCCTCGGCGCTGACCATTTCTACCTCTCATGCACCGGCATCGGGTACGAATCGGACCGGAATCTCGTCGAGTTGAAGAAAAACTCGGTCCAGATCTCGTGCTTCCCGACGCCGGCCGGGAAGTTCATCCCTCACAAGGACATTTCGCTTCCGCCGGTCCCGAGCACTCCCGCGCCGACGACCAACACCACGAGTTTCTTGGGCTACGCCAAGTTCGATTGGGTCAAAGAGTCAACGTTAGTCAAGGAACTGAGCAGCGACCCCGATTTTCTGATCGAATCCAAGCCGTCGGATCTGAATACTTTCGCGGACAGACTCGGCGGGAGCAAATTCTGTCTGTTCGAGTACGGAGGAGGCGACGTGTCGGGGATCTGGGAGGCGCTGCGTTTCGGGTGCGTGCCGGTGGTGATTACCGACCGTCCGATCCACGACCTGCCGTTCTCGGACGTGCTGAGGTGGCAGGAGATCGCGTTGTTCGTGGGACGTCGTGGCGGGGTAGTGACGGACCTGAAGCTCGTGTTGGGTCGCGCGTGTTGGGAGCGGCACGAAAAGATGAGACAATTAGGTGTGGCTGCAAGTCGGCACTTTATGTGGAACGAGACACCGGAGCCGTTCGATTCGTTTTATACGTTGATGTATCAGCTGTGGCTGAGACGGCACACCGTCAGATACGTCAGAAGAGAATCACCGTTTGTCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

352

Amino Acids

40.13

Weight (kDa)

8.73

Isoelectric Point (pI)

65.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 47 - 278 5.4e-26 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015693)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g23460
malus_domestica MD01G1140500.v1.1 MD07G1204800.v1.1
prunus_persica Prupe.2G241000_v2.0.a1
pyrus_communis pycom07g19130
rosa_chinensis RchiOBHm_Chr1g0368611
rosa_laevigata RLG00000020781 RLG00000027201
rosa_multiflora Rmu_sc0001791.1_g000003 Rmu_sc0011394.1_g000003
rosa_roxburghii Rroxscaffold_4G00288410
rosa_rugosa Rorug01G0343100
rosa_samantha Rh1AG350400 Rh1BG313700 Rh1CG328300 Rh1DG345100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 841
Acc36I ACCTGC 1 cut(s) 795
AccBSI CCGCTC 2 cut(s) 65, 895
AccII CGCG 8 cut(s) 214, 298, 310, 527, 662, 824, 882, 884
AclI AACGTT 1 cut(s) 590
AclWI GGATC 3 cut(s) 654, 731, 772
AcoI YGGCCR 1 cut(s) 468
AcsI RAATTY 1 cut(s) 683
AcuI CTGAAG 1 cut(s) 884
AcyI GRCGYC 2 cut(s) 464, 838
AfaI GTAC 2 cut(s) 401, 701
AfiI CCNNNNNNNGG 3 cut(s) 396, 466, 490
AflIII ACRYGT 2 cut(s) 129, 714
AgsI TTSAA 3 cut(s) 136, 145, 430
AjiI CACGTC 2 cut(s) 715, 802
AjnI CCWGG 1 cut(s) 219
AjuI GAANNNNNNNTTGG 2 cut(s) 857, 889
AluBI AGCT 3 cut(s) 337, 868, 997
AluI AGCT 3 cut(s) 337, 868, 997
Alw21I GWGCWC 1 cut(s) 521
Alw26I GTCTC 4 cut(s) 310, 904, 947, 1000
AlwI GGATC 3 cut(s) 654, 731, 772
Ama87I CYCGRG 1 cut(s) 514
AoxI GGCC 1 cut(s) 468
ApeKI GCWGC 3 cut(s) 609, 736, 926
ApoI RAATTY 1 cut(s) 683
Asp700I GAANNNNTTC 1 cut(s) 656
AspLEI GCGC 7 cut(s) 216, 300, 312, 365, 529, 736, 884
AspS9I GGNCC 4 cut(s) 409, 442, 511, 859
AsuC2I CCSGG 1 cut(s) 472
AsuHPI GGTGA 4 cut(s) 90, 104, 772, 1032
AvaI CYCGRG 1 cut(s) 514
AvaII GGWCC 4 cut(s) 409, 442, 511, 859
BauI CACGAG 3 cut(s) 451, 544, 869
Bbv12I GWGCWC 1 cut(s) 521
BbvCI CCTCAGC 1 cut(s) 806
BbvI GCAGC 3 cut(s) 621, 723, 913
BccI CCATC 2 cut(s) 199, 267
BceAI ACGGC 5 cut(s) 38, 625, 775, 949, 1025
BcgI CGANNNNNNTGC 2 cut(s) 376, 410
BciT130I CCWGG 1 cut(s) 221
BcnI CCSGG 1 cut(s) 472
BcoDI GTCTC 4 cut(s) 310, 904, 947, 1000
BfoI RGCGCY 2 cut(s) 366, 737
BfuAI ACCTGC 1 cut(s) 795
BglII AGATCT 1 cut(s) 447
BisI GCNGC 5 cut(s) 63, 610, 737, 896, 927
BlsI GCNGC 5 cut(s) 64, 611, 738, 897, 928
Bme1390I CCNGG 2 cut(s) 221, 472
Bme18I GGWCC 4 cut(s) 409, 442, 511, 859
BmeT110I CYCGRG 1 cut(s) 514
BmgBI CACGTC 2 cut(s) 715, 802
BmgT120I GGNCC 4 cut(s) 409, 442, 511, 859
BmiI GGNNCC 3 cut(s) 350, 513, 963
BmrFI CCNGG 2 cut(s) 221, 472
BmsI GCATC 1 cut(s) 402
BpmI CTGGAG 1 cut(s) 203
Bpu10I CCTNAGC 1 cut(s) 806
BpuMI CCSGG 1 cut(s) 472
BsaHI GRCGYC 2 cut(s) 464, 838
BsaJI CCNNGG 1 cut(s) 358
BsaWI WCCGGW 2 cut(s) 411, 958
BsaXI ACNNNNNCTCC 6 cut(s) 12, 42, 699, 729, 809, 839
Bsc4I CCNNNNNNNGG 3 cut(s) 396, 466, 490
Bse118I RCCGGY 4 cut(s) 389, 466, 508, 754
Bse1I ACTGG 1 cut(s) 350
BseBI CCWGG 1 cut(s) 221
BseDI CCNNGG 1 cut(s) 358
BseGI GGATG 2 cut(s) 191, 480
BseLI CCNNNNNNNGG 3 cut(s) 396, 466, 490
BseMII CTCAG 3 cut(s) 596, 797, 995
BseNI ACTGG 1 cut(s) 350
BseRI GAGGAG 3 cut(s) 20, 23, 720
BseX3I CGGCCG 1 cut(s) 468
BseXI GCAGC 3 cut(s) 621, 723, 913
BseYI CCCAGC 1 cut(s) 72
Bsh1236I CGCG 8 cut(s) 214, 298, 310, 527, 662, 824, 882, 884
Bsh1285I CGRYCG 2 cut(s) 471, 772
BshFI GGCC 1 cut(s) 470
BsiEI CGRYCG 2 cut(s) 471, 772
BsiHKAI GWGCWC 1 cut(s) 521
BsiHKCI CYCGRG 1 cut(s) 514
BsiSI CCGG 7 cut(s) 390, 412, 467, 471, 509, 755, 959
BslFI GGGAC 3 cut(s) 257, 497, 849
BslI CCNNNNNNNGG 3 cut(s) 396, 466, 490
BsmAI GTCTC 4 cut(s) 310, 904, 947, 1000
BsmBI CGTCTC 2 cut(s) 310, 1000
BsmFI GGGAC 3 cut(s) 257, 497, 849
BsnI GGCC 1 cut(s) 470
BsoBI CYCGRG 1 cut(s) 514
Bsp1286I GDGCHC 1 cut(s) 521
Bsp143I GATC 7 cut(s) 320, 447, 627, 646, 723, 777, 819
BspANI GGCC 1 cut(s) 470
BspCNI CTCAG 3 cut(s) 597, 798, 996
BspFNI CGCG 8 cut(s) 214, 298, 310, 527, 662, 824, 882, 884
BspLI GGNNCC 3 cut(s) 350, 513, 963
BspMI ACCTGC 1 cut(s) 795
BspPI GGATC 3 cut(s) 654, 731, 772
BspQI GCTCTTC 1 cut(s) 209
BsrBI CCGCTC 2 cut(s) 65, 895
BsrFI RCCGGY 4 cut(s) 389, 466, 508, 754
BsrI ACTGG 1 cut(s) 350
BssAI RCCGGY 4 cut(s) 389, 466, 508, 754
BssECI CCNNGG 1 cut(s) 358
BssMI GATC 7 cut(s) 320, 447, 627, 646, 723, 777, 819
BssNI GRCGYC 2 cut(s) 464, 838
BssSI CACGAG 3 cut(s) 451, 544, 869
Bst2BI CACGAG 3 cut(s) 451, 544, 869
Bst2UI CCWGG 1 cut(s) 221
Bst4CI ACNGT 4 cut(s) 55, 773, 1018, 1044
Bst6I CTCTTC 3 cut(s) 209, 269, 1027
BstACI GRCGYC 2 cut(s) 464, 838
BstC8I GCNNGC 2 cut(s) 468, 752
BstDEI CTNAG 3 cut(s) 605, 806, 1004
BstF5I GGATG 2 cut(s) 191, 480
BstFNI CGCG 8 cut(s) 214, 298, 310, 527, 662, 824, 882, 884
BstH2I RGCGCY 2 cut(s) 366, 737
BstHHI GCGC 7 cut(s) 216, 300, 312, 365, 529, 736, 884
BstKTI GATC 7 cut(s) 323, 450, 630, 649, 726, 780, 822
BstMAI GTCTC 4 cut(s) 310, 904, 947, 1000
BstMBI GATC 7 cut(s) 320, 447, 627, 646, 723, 777, 819
BstMCI CGRYCG 2 cut(s) 471, 772
BstMWI GCNNNNNNNGC 3 cut(s) 360, 811, 1009
BstNI CCWGG 1 cut(s) 221
BstNSI RCATGY 1 cut(s) 133
BstSCI CCNGG 2 cut(s) 219, 470
BstUI CGCG 8 cut(s) 214, 298, 310, 527, 662, 824, 882, 884
BstV1I GCAGC 3 cut(s) 621, 723, 913
BstX2I RGATCY 3 cut(s) 447, 646, 723
BstYI RGATCY 3 cut(s) 447, 646, 723
BstZI CGGCCG 1 cut(s) 468
BsuRI GGCC 1 cut(s) 470
BtrI CACGTC 2 cut(s) 715, 802
BtsCI GGATG 2 cut(s) 191, 480
BveI ACCTGC 1 cut(s) 795
Cac8I GCNNGC 2 cut(s) 468, 752
CfoI GCGC 7 cut(s) 216, 300, 312, 365, 529, 736, 884
Cfr10I RCCGGY 4 cut(s) 389, 466, 508, 754
Cfr13I GGNCC 4 cut(s) 409, 442, 511, 859
CpoI CGGWCCG 1 cut(s) 409
CseI GACGC 1 cut(s) 472
Csp6I GTAC 2 cut(s) 400, 700
CspI CGGWCCG 1 cut(s) 409
CviAII CATG 2 cut(s) 130, 384
CviQI GTAC 2 cut(s) 400, 700
DdeI CTNAG 3 cut(s) 605, 806, 1004
DpnI GATC 7 cut(s) 322, 449, 629, 648, 725, 779, 821
DpnII GATC 7 cut(s) 320, 447, 627, 646, 723, 777, 819
EaeI YGGCCR 1 cut(s) 468
EagI CGGCCG 1 cut(s) 468
Eam1104I CTCTTC 3 cut(s) 209, 269, 1027
EarI CTCTTC 3 cut(s) 209, 269, 1027
EciI GGCGGA 1 cut(s) 495
EclXI CGGCCG 1 cut(s) 468
Eco47I GGWCC 4 cut(s) 409, 442, 511, 859
Eco52I CGGCCG 1 cut(s) 468
Eco57I CTGAAG 1 cut(s) 884
Eco88I CYCGRG 1 cut(s) 514
EcoRII CCWGG 1 cut(s) 219
Esp3I CGTCTC 2 cut(s) 310, 1000
FaeI CATG 2 cut(s) 133, 387
FaiI YATR 5 cut(s) 17, 131, 385, 944, 981
FaqI GGGAC 3 cut(s) 257, 497, 849
FatI CATG 2 cut(s) 129, 383
FauI CCCGC 4 cut(s) 303, 532, 668, 839
Fnu4HI GCNGC 5 cut(s) 63, 610, 737, 896, 927
FokI GGATG 2 cut(s) 178, 467
Fsp4HI GCNGC 5 cut(s) 63, 610, 737, 896, 927
GlaI GCGC 7 cut(s) 215, 299, 311, 364, 528, 735, 883
GluI GCNGC 5 cut(s) 63, 610, 737, 896, 927
GsaI CCCAGC 1 cut(s) 76
GsuI CTGGAG 1 cut(s) 203
HaeII RGCGCY 2 cut(s) 366, 737
HaeIII GGCC 1 cut(s) 470
HapII CCGG 7 cut(s) 390, 412, 467, 471, 509, 755, 959
HgaI GACGC 1 cut(s) 472
HhaI GCGC 7 cut(s) 216, 300, 312, 365, 529, 736, 884
Hin1I GRCGYC 2 cut(s) 464, 838
Hin1II CATG 2 cut(s) 133, 387
Hin6I GCGC 7 cut(s) 214, 298, 310, 363, 527, 734, 882
HinP1I GCGC 7 cut(s) 214, 298, 310, 363, 527, 734, 882
HincII GTYRAC 1 cut(s) 588
HindII GTYRAC 1 cut(s) 588
HinfI GANTC 7 cut(s) 404, 415, 584, 632, 669, 971, 1037
HpaII CCGG 7 cut(s) 390, 412, 467, 471, 509, 755, 959
HphI GGTGA 4 cut(s) 90, 104, 772, 1032
Hpy166II GTNNAC 2 cut(s) 6, 588
Hpy188III TCNNGA 3 cut(s) 445, 460, 514
Hpy8I GTNNAC 2 cut(s) 6, 588
Hpy99I CGWCG 6 cut(s) 425, 466, 535, 646, 716, 843
HpyAV CCTTC 3 cut(s) 151, 184, 286
HpyCH4III ACNGT 4 cut(s) 55, 773, 1018, 1044
HpyCH4IV ACGT 6 cut(s) 590, 714, 801, 838, 983, 1026
HpyCH4V TGCA 2 cut(s) 387, 929
HpyF10VI GCNNNNNNNGC 3 cut(s) 360, 811, 1009
HpyF3I CTNAG 3 cut(s) 605, 806, 1004
HpySE526I ACGT 6 cut(s) 590, 714, 801, 838, 983, 1026
Hsp92I GRCGYC 2 cut(s) 464, 838
Hsp92II CATG 2 cut(s) 133, 387
HspAI GCGC 7 cut(s) 214, 298, 310, 363, 527, 734, 882
KroI GCCGGC 1 cut(s) 466
KroNI GCCGGC 1 cut(s) 468
Kzo9I GATC 7 cut(s) 320, 447, 627, 646, 723, 777, 819
LguI GCTCTTC 1 cut(s) 209
LmnI GCTCC 5 cut(s) 305, 330, 678, 892, 961
Lsp1109I GCAGC 3 cut(s) 621, 723, 913
LweI GCATC 1 cut(s) 402
MaeII ACGT 6 cut(s) 590, 714, 801, 838, 983, 1026
MaeIII GTNAC 1 cut(s) 853
MalI GATC 7 cut(s) 322, 449, 629, 648, 725, 779, 821
MbiI CCGCTC 2 cut(s) 65, 895
MboI GATC 7 cut(s) 320, 447, 627, 646, 723, 777, 819
MboII GAAGA 6 cut(s) 142, 196, 256, 259, 442, 1044
MflI RGATCY 3 cut(s) 447, 646, 723
MhlI GDGCHC 1 cut(s) 521
MluCI AATT 5 cut(s) 108, 118, 136, 683, 914
MlyI GAGTC 2 cut(s) 593, 663
MmeI TCCRAC 2 cut(s) 309, 624
MroNI GCCGGC 1 cut(s) 466
MroXI GAANNNNTTC 1 cut(s) 656
MspA1I CMGCKG 1 cut(s) 997
MspI CCGG 7 cut(s) 390, 412, 467, 471, 509, 755, 959
MspR9I CCNGG 2 cut(s) 221, 472
MvaI CCWGG 1 cut(s) 221
MvnI CGCG 8 cut(s) 214, 298, 310, 527, 662, 824, 882, 884
MwoI GCNNNNNNNGC 3 cut(s) 360, 811, 1009
NaeI GCCGGC 1 cut(s) 468
NciI CCSGG 1 cut(s) 472
NdeII GATC 7 cut(s) 320, 447, 627, 646, 723, 777, 819
NgoMIV GCCGGC 1 cut(s) 466
NlaIII CATG 2 cut(s) 133, 387
NlaIV GGNNCC 3 cut(s) 350, 513, 963
NmeAIII GCCGAG 2 cut(s) 339, 651
NmuCI GTSAC 1 cut(s) 853
NspI RCATGY 1 cut(s) 133
PciI ACATGT 1 cut(s) 129
PciSI GCTCTTC 1 cut(s) 209
PcsI WCGNNNNNNNCGW 5 cut(s) 458, 567, 708, 828, 980
PdiI GCCGGC 1 cut(s) 468
PdmI GAANNNNTTC 1 cut(s) 656
PfeI GAWTC 5 cut(s) 404, 415, 632, 971, 1037
PfoI TCCNGGA 1 cut(s) 219
PkrI GCNGC 5 cut(s) 64, 611, 738, 897, 928
PleI GAGTC 2 cut(s) 592, 663
PpsI GAGTC 2 cut(s) 592, 663
PscI ACATGT 1 cut(s) 129
Psp1406I AACGTT 1 cut(s) 590
Psp6I CCWGG 1 cut(s) 219
PspFI CCCAGC 1 cut(s) 72
PspGI CCWGG 1 cut(s) 219
PspN4I GGNNCC 3 cut(s) 350, 513, 963
PspPI GGNCC 4 cut(s) 409, 442, 511, 859
PsuI RGATCY 3 cut(s) 447, 646, 723
PvuII CAGCTG 1 cut(s) 997
RsaI GTAC 2 cut(s) 401, 701
RsaNI GTAC 2 cut(s) 400, 700
Rsr2I CGGWCCG 1 cut(s) 409
RsrII CGGWCCG 1 cut(s) 409
SapI GCTCTTC 1 cut(s) 209
SatI GCNGC 5 cut(s) 63, 610, 737, 896, 927
Sau3AI GATC 7 cut(s) 320, 447, 627, 646, 723, 777, 819
Sau96I GGNCC 4 cut(s) 409, 442, 511, 859
SchI GAGTC 2 cut(s) 593, 663
ScrFI CCNGG 2 cut(s) 221, 472
SduI GDGCHC 1 cut(s) 521
SfaNI GCATC 1 cut(s) 402
SinI GGWCC 4 cut(s) 409, 442, 511, 859
Sse9I AATT 5 cut(s) 108, 118, 136, 683, 914
StyD4I CCNGG 2 cut(s) 219, 470
TaaI ACNGT 4 cut(s) 55, 773, 1018, 1044
TaiI ACGT 6 cut(s) 593, 717, 804, 841, 986, 1029
TaqI TCGA 5 cut(s) 423, 570, 630, 696, 969
TaqII GACCGA 1 cut(s) 430
TasI AATT 5 cut(s) 108, 118, 136, 683, 914
TauI GCSGC 2 cut(s) 65, 898
TfiI GAWTC 5 cut(s) 404, 415, 632, 971, 1037
TseFI GTSAC 1 cut(s) 853
TseI GCWGC 3 cut(s) 609, 736, 926
Tsp45I GTSAC 1 cut(s) 853
TspDTI ATGAA 2 cut(s) 142, 469
TspGWI ACGGA 3 cut(s) 292, 717, 872
VpaK11BI GGWCC 4 cut(s) 409, 442, 511, 859
XapI RAATTY 1 cut(s) 683
XceI RCATGY 1 cut(s) 133
XcmI CCANNNNNNNNNTGG 1 cut(s) 550
XmnI GAANNNNTTC 1 cut(s) 656
ZraI GACGTC 1 cut(s) 839
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.