RLG00000027201

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0015693
Physical Location & Seq
Reverse (-)
9545476 .. 9546619
1144 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027201

Sequence Viewer

Length: 1047 bp
ATGTCCACCACCACCATTTTCCTCTTCCTCTTCTCCCTCCTCCTCACCACCCACTCCAAACCCATCCCCCACCTCACCTCCCCCTACCTCTCCCCCGCCACCATCTCCGCCAACTACGACTCCATGGTCAAGAACTTCAAAATCTTCATCTACAAGCCAAATCCTCACTTCACTTACGACTCCCCCGTCCAGTCTCTCTTCTACACCACCCTCCTCGACAGCGACCTCGCCACCAACAACACCGACGAAGCCCACCTCTTCTTCCTCCCCTTCCCGCCAGATCTCCCCACGCGCTCCCTTGCGCGTCTCATCCGCACCATCCGCACCGACCTCCCTTACTGGAACCGCACCCTCGGAGCTGACCACTTCTACCTCTCCTGCTCCGGCGTCGGGTACGAGTCCGATCGGAGCCTCGTCGAGCTGAAGAAGAACTCGATCCAGATCTCCTGCTTCCCCACCCCGCCGGGGAAGCTCATCCCTCACAAGGACATCACTCTCCCCTCACTCGCGTCCCCCCACGCCCCGACCACCAACACGACGACGTTTCTGGGCTACGTCAGGTCGAATTGGGTGAATGATTCCGCCATAGTCAACGGGTTACGCGCCAACCCGGATTTCCTGATCGAATTGGAGCCGTCTACGCCGCAGATCTATGCACAGAGGCTCTCCAGCAGCAAGTTCTGTATCTTCGAGTACGGCGACGGCGACGTGTCCGGGATCGGAGAGGCTCTGCGGTTCGGGTGCGTCCCCGTGGTGATTACGGACCGTCCGATCCAGGACCTGCCGTTCATGGACGTGCTGAGGTGGCAGGAGATAGCGCTGTTCGTGGGGAGGAGAGGTGGGGCCAAGGAGTTGGAGCGCGTGTTGGTACGTGCGTGCTGGGAGAGGCACGACCAGATGAGGCGGTTGGGTACGGCGGCGGGTCAGCATTTGGTGTGGAACGTGCCGCCGCGGGCTTTGGATGCGTTTCATACTTTGGGGAACAGTGATAGGCTCACTGTAGGCCCGGTTGTGCCAATGGGATGGGCAAAGACCCTTGGAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

349

Amino Acids

39.02

Weight (kDa)

7.71

Isoelectric Point (pI)

46.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 44 - 277 9.9e-28 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015693)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g23460
malus_domestica MD01G1140500.v1.1 MD07G1204800.v1.1
prunus_persica Prupe.2G241000_v2.0.a1
pyrus_communis pycom07g19130
rosa_chinensis RchiOBHm_Chr1g0368611
rosa_laevigata RLG00000020781 RLG00000027201
rosa_multiflora Rmu_sc0001791.1_g000003 Rmu_sc0011394.1_g000003
rosa_roxburghii Rroxscaffold_4G00288410
rosa_rugosa Rorug01G0343100
rosa_samantha Rh1AG350400 Rh1BG313700 Rh1CG328300 Rh1DG345100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 125, 185
Acc36I ACCTGC 1 cut(s) 789
AccI GTMKAC 1 cut(s) 638
AccII CGCG 6 cut(s) 292, 304, 509, 603, 861, 952
AclWI GGATC 3 cut(s) 430, 725, 766
AcuI CTGAAG 1 cut(s) 443
AcyI GRCGYC 1 cut(s) 387
AfaI GTAC 4 cut(s) 395, 695, 870, 913
AfeI AGCGCT 1 cut(s) 819
AfiI CCNNNNNNNGG 3 cut(s) 390, 465, 484
AflIII ACRYGT 1 cut(s) 708
AgsI TTSAA 1 cut(s) 139
AjiI CACGTC 2 cut(s) 709, 796
AjnI CCWGG 1 cut(s) 774
AjuI GAANNNNNNNTTGG 2 cut(s) 599, 631
AloI GAACNNNNNNTCC 2 cut(s) 770, 802
AluBI AGCT 3 cut(s) 359, 421, 472
AluI AGCT 3 cut(s) 359, 421, 472
Alw26I GTCTC 2 cut(s) 198, 311
AlwI GGATC 3 cut(s) 430, 725, 766
AlwNI CAGNNNCTG 1 cut(s) 781
Aor51HI AGCGCT 1 cut(s) 819
AoxI GGCC 2 cut(s) 843, 1003
ApeKI GCWGC 1 cut(s) 672
AspLEI GCGC 5 cut(s) 294, 304, 605, 820, 861
AspS9I GGNCC 4 cut(s) 763, 778, 843, 1004
AsuC2I CCSGG 4 cut(s) 465, 611, 715, 1007
AsuHPI GGTGA 4 cut(s) 37, 67, 583, 766
AvaII GGWCC 2 cut(s) 763, 778
BaeI ACNNNNGTAYC 2 cut(s) 860, 893
BbvCI CCTCAGC 1 cut(s) 800
BbvI GCAGC 1 cut(s) 684
BccI CCATC 4 cut(s) 71, 110, 326, 1017
BceAI ACGGC 5 cut(s) 619, 712, 718, 769, 930
BciT130I CCWGG 1 cut(s) 776
BcnI CCSGG 4 cut(s) 465, 611, 715, 1007
BcoDI GTCTC 2 cut(s) 198, 311
BfmI CTRYAG 1 cut(s) 999
BfoI RGCGCY 1 cut(s) 821
BfuAI ACCTGC 1 cut(s) 789
BglII AGATCT 3 cut(s) 280, 441, 648
BisI GCNGC 5 cut(s) 644, 673, 918, 947, 950
BlsI GCNGC 5 cut(s) 645, 674, 919, 948, 951
Bme1390I CCNGG 5 cut(s) 465, 611, 715, 776, 1007
Bme18I GGWCC 2 cut(s) 763, 778
BmgBI CACGTC 2 cut(s) 709, 796
BmgT120I GGNCC 4 cut(s) 763, 778, 843, 1004
BmiI GGNNCC 4 cut(s) 344, 410, 633, 844
BmrFI CCNGG 5 cut(s) 465, 611, 715, 776, 1007
BmsI GCATC 1 cut(s) 952
BpmI CTGGAG 1 cut(s) 652
Bpu10I CCTNAGC 1 cut(s) 800
BpuMI CCSGG 4 cut(s) 465, 611, 715, 1007
BsaAI YACGTR 1 cut(s) 872
BsaBI GATNNNNATC 1 cut(s) 440
BsaHI GRCGYC 1 cut(s) 387
BsaJI CCNNGG 7 cut(s) 123, 352, 464, 750, 846, 950, 1036
BsaXI ACNNNNNCTCC 8 cut(s) 62, 92, 104, 134, 823, 848, 853, 878
Bsc4I CCNNNNNNNGG 3 cut(s) 390, 465, 484
Bse1I ACTGG 2 cut(s) 190, 344
Bse8I GATNNNNATC 1 cut(s) 440
BseBI CCWGG 1 cut(s) 776
BseDI CCNNGG 7 cut(s) 123, 352, 464, 750, 846, 950, 1036
BseGI GGATG 6 cut(s) 63, 309, 318, 474, 967, 1028
BseJI GATNNNNATC 1 cut(s) 440
BseLI CCNNNNNNNGG 3 cut(s) 390, 465, 484
BseMII CTCAG 1 cut(s) 791
BseNI ACTGG 2 cut(s) 190, 344
BseRI GAGGAG 4 cut(s) 29, 32, 203, 847
BseXI GCAGC 1 cut(s) 684
BseYI CCCAGC 1 cut(s) 879
Bsh1236I CGCG 6 cut(s) 292, 304, 509, 603, 861, 952
Bsh1285I CGRYCG 1 cut(s) 406
BshFI GGCC 2 cut(s) 845, 1005
BsiEI CGRYCG 1 cut(s) 406
BsiSI CCGG 5 cut(s) 384, 464, 611, 714, 1007
BslFI GGGAC 2 cut(s) 496, 731
BslI CCNNNNNNNGG 3 cut(s) 390, 465, 484
BsmAI GTCTC 2 cut(s) 198, 311
BsmBI CGTCTC 1 cut(s) 311
BsmFI GGGAC 2 cut(s) 496, 731
BsnI GGCC 2 cut(s) 845, 1005
Bsp143I GATC 8 cut(s) 280, 403, 435, 441, 621, 648, 717, 771
Bsp19I CCATGG 1 cut(s) 123
BspANI GGCC 2 cut(s) 845, 1005
BspCNI CTCAG 1 cut(s) 792
BspFNI CGCG 6 cut(s) 292, 304, 509, 603, 861, 952
BspLI GGNNCC 4 cut(s) 344, 410, 633, 844
BspMI ACCTGC 1 cut(s) 789
BspPI GGATC 3 cut(s) 430, 725, 766
BsrI ACTGG 2 cut(s) 190, 344
BssECI CCNNGG 7 cut(s) 123, 352, 464, 750, 846, 950, 1036
BssMI GATC 8 cut(s) 280, 403, 435, 441, 621, 648, 717, 771
BssNI GRCGYC 1 cut(s) 387
BssT1I CCWWGG 3 cut(s) 123, 846, 1036
Bst2UI CCWGG 1 cut(s) 776
Bst4CI ACNGT 3 cut(s) 767, 986, 1000
Bst6I CTCTTC 4 cut(s) 29, 35, 203, 263
BstACI GRCGYC 1 cut(s) 387
BstBAI YACGTR 1 cut(s) 872
BstC8I GCNNGC 2 cut(s) 877, 954
BstDEI CTNAG 1 cut(s) 800
BstDSI CCRYGG 3 cut(s) 123, 750, 950
BstF5I GGATG 6 cut(s) 63, 309, 318, 474, 967, 1028
BstFNI CGCG 6 cut(s) 292, 304, 509, 603, 861, 952
BstH2I RGCGCY 1 cut(s) 821
BstHHI GCGC 5 cut(s) 294, 304, 605, 820, 861
BstKTI GATC 8 cut(s) 283, 406, 438, 444, 624, 651, 720, 774
BstMAI GTCTC 2 cut(s) 198, 311
BstMBI GATC 8 cut(s) 280, 403, 435, 441, 621, 648, 717, 771
BstMCI CGRYCG 1 cut(s) 406
BstMWI GCNNNNNNNGC 5 cut(s) 321, 469, 640, 805, 962
BstNI CCWGG 1 cut(s) 776
BstSCI CCNGG 5 cut(s) 463, 609, 713, 774, 1005
BstSFI CTRYAG 1 cut(s) 999
BstUI CGCG 6 cut(s) 292, 304, 509, 603, 861, 952
BstV1I GCAGC 1 cut(s) 684
BstX2I RGATCY 3 cut(s) 280, 441, 648
BstXI CCANNNNNNTGG 2 cut(s) 853, 1023
BstYI RGATCY 3 cut(s) 280, 441, 648
BsuRI GGCC 2 cut(s) 845, 1005
BtgI CCRYGG 3 cut(s) 123, 750, 950
BtrI CACGTC 2 cut(s) 709, 796
BtsCI GGATG 6 cut(s) 63, 309, 318, 474, 967, 1028
BtsIMutI CAGTG 2 cut(s) 991, 996
BveI ACCTGC 1 cut(s) 789
Cac8I GCNNGC 2 cut(s) 877, 954
CaiI CAGNNNCTG 1 cut(s) 781
CfoI GCGC 5 cut(s) 294, 304, 605, 820, 861
Cfr13I GGNCC 4 cut(s) 763, 778, 843, 1004
Cfr42I CCGCGG 1 cut(s) 953
CpoI CGGWCCG 1 cut(s) 763
CseI GACGC 4 cut(s) 293, 376, 498, 733
Csp6I GTAC 4 cut(s) 394, 694, 869, 912
CspI CGGWCCG 1 cut(s) 763
CviAII CATG 2 cut(s) 124, 790
CviQI GTAC 4 cut(s) 394, 694, 869, 912
DdeI CTNAG 1 cut(s) 800
DpnI GATC 8 cut(s) 282, 405, 437, 443, 623, 650, 719, 773
DpnII GATC 8 cut(s) 280, 403, 435, 441, 621, 648, 717, 771
DrdI GACNNNNNNGTC 2 cut(s) 125, 185
DseDI GACNNNNNNGTC 2 cut(s) 125, 185
Eam1104I CTCTTC 4 cut(s) 29, 35, 203, 263
EarI CTCTTC 4 cut(s) 29, 35, 203, 263
EciI GGCGGA 2 cut(s) 97, 571
Eco130I CCWWGG 3 cut(s) 123, 846, 1036
Eco47I GGWCC 2 cut(s) 763, 778
Eco47III AGCGCT 1 cut(s) 819
Eco57I CTGAAG 1 cut(s) 443
EcoO109I RGGNCCY 1 cut(s) 778
EcoRII CCWGG 1 cut(s) 774
EcoT14I CCWWGG 3 cut(s) 123, 846, 1036
ErhI CCWWGG 3 cut(s) 123, 846, 1036
Esp3I CGTCTC 1 cut(s) 311
FaeI CATG 2 cut(s) 127, 793
FaiI YATR 5 cut(s) 125, 587, 654, 791, 972
FaqI GGGAC 2 cut(s) 496, 731
FatI CATG 2 cut(s) 123, 789
FauI CCCGC 5 cut(s) 103, 282, 468, 913, 945
FblI GTMKAC 1 cut(s) 638
Fnu4HI GCNGC 5 cut(s) 644, 673, 918, 947, 950
FokI GGATG 6 cut(s) 50, 296, 305, 461, 974, 1035
Fsp4HI GCNGC 5 cut(s) 644, 673, 918, 947, 950
GlaI GCGC 5 cut(s) 293, 303, 604, 819, 860
GluI GCNGC 5 cut(s) 644, 673, 918, 947, 950
GsaI CCCAGC 1 cut(s) 883
GsuI CTGGAG 1 cut(s) 652
HaeII RGCGCY 1 cut(s) 821
HaeIII GGCC 2 cut(s) 845, 1005
HapII CCGG 5 cut(s) 384, 464, 611, 714, 1007
HgaI GACGC 4 cut(s) 293, 376, 498, 733
HhaI GCGC 5 cut(s) 294, 304, 605, 820, 861
Hin1I GRCGYC 1 cut(s) 387
Hin1II CATG 2 cut(s) 127, 793
Hin6I GCGC 5 cut(s) 292, 302, 603, 818, 859
HinP1I GCGC 5 cut(s) 292, 302, 603, 818, 859
HincII GTYRAC 1 cut(s) 592
HindII GTYRAC 1 cut(s) 592
HinfI GANTC 4 cut(s) 119, 179, 398, 578
HpaII CCGG 5 cut(s) 384, 464, 611, 714, 1007
HphI GGTGA 4 cut(s) 37, 67, 583, 766
Hpy166II GTNNAC 3 cut(s) 6, 592, 639
Hpy188I TCNGA 5 cut(s) 356, 403, 408, 722, 771
Hpy188III TCNNGA 3 cut(s) 130, 439, 619
Hpy8I GTNNAC 3 cut(s) 6, 592, 639
Hpy99I CGWCG 7 cut(s) 248, 392, 419, 541, 544, 704, 710
HpyAV CCTTC 1 cut(s) 280
HpyCH4III ACNGT 3 cut(s) 767, 986, 1000
HpyCH4IV ACGT 6 cut(s) 542, 555, 708, 795, 871, 942
HpyCH4V TGCA 1 cut(s) 656
HpyF10VI GCNNNNNNNGC 5 cut(s) 321, 469, 640, 805, 962
HpyF3I CTNAG 1 cut(s) 800
HpySE526I ACGT 6 cut(s) 542, 555, 708, 795, 871, 942
Hsp92I GRCGYC 1 cut(s) 387
Hsp92II CATG 2 cut(s) 127, 793
HspAI GCGC 5 cut(s) 292, 302, 603, 818, 859
KspI CCGCGG 1 cut(s) 953
Kzo9I GATC 8 cut(s) 280, 403, 435, 441, 621, 648, 717, 771
LmnI GCTCC 6 cut(s) 299, 356, 386, 408, 631, 856
Lsp1109I GCAGC 1 cut(s) 684
LweI GCATC 1 cut(s) 952
MaeII ACGT 6 cut(s) 542, 555, 708, 795, 871, 942
MaeIII GTNAC 1 cut(s) 597
MalI GATC 8 cut(s) 282, 405, 437, 443, 623, 650, 719, 773
MboI GATC 8 cut(s) 280, 403, 435, 441, 621, 648, 717, 771
MboII GAAGA 9 cut(s) 16, 22, 136, 190, 250, 253, 436, 439, 679
MflI RGATCY 3 cut(s) 280, 441, 648
MluCI AATT 2 cut(s) 565, 626
MlyI GAGTC 3 cut(s) 113, 173, 407
MmeI TCCRAC 1 cut(s) 834
MslI CAYNNNNRTG 1 cut(s) 794
MspA1I CMGCKG 1 cut(s) 952
MspI CCGG 5 cut(s) 384, 464, 611, 714, 1007
MspR9I CCNGG 5 cut(s) 465, 611, 715, 776, 1007
MvaI CCWGG 1 cut(s) 776
MvnI CGCG 6 cut(s) 292, 304, 509, 603, 861, 952
MwoI GCNNNNNNNGC 5 cut(s) 321, 469, 640, 805, 962
NciI CCSGG 4 cut(s) 465, 611, 715, 1007
NcoI CCATGG 1 cut(s) 123
NdeII GATC 8 cut(s) 280, 403, 435, 441, 621, 648, 717, 771
NlaIII CATG 2 cut(s) 127, 793
NlaIV GGNNCC 4 cut(s) 344, 410, 633, 844
PcsI WCGNNNNNNNCGW 4 cut(s) 183, 696, 702, 767
PfeI GAWTC 1 cut(s) 578
PfoI TCCNGGA 2 cut(s) 713, 774
PkrI GCNGC 5 cut(s) 645, 674, 919, 948, 951
Ple19I CGATCG 1 cut(s) 406
PleI GAGTC 3 cut(s) 113, 173, 406
PpsI GAGTC 3 cut(s) 113, 173, 406
Ppu21I YACGTR 1 cut(s) 872
PpuMI RGGWCCY 1 cut(s) 778
Psp5II RGGWCCY 1 cut(s) 778
Psp6I CCWGG 1 cut(s) 774
PspFI CCCAGC 1 cut(s) 879
PspGI CCWGG 1 cut(s) 774
PspN4I GGNNCC 4 cut(s) 344, 410, 633, 844
PspPI GGNCC 4 cut(s) 763, 778, 843, 1004
PspPPI RGGWCCY 1 cut(s) 778
PstNI CAGNNNCTG 1 cut(s) 781
PsuI RGATCY 3 cut(s) 280, 441, 648
PvuI CGATCG 1 cut(s) 406
RsaI GTAC 4 cut(s) 395, 695, 870, 913
RsaNI GTAC 4 cut(s) 394, 694, 869, 912
RseI CAYNNNNRTG 1 cut(s) 794
Rsr2I CGGWCCG 1 cut(s) 763
RsrII CGGWCCG 1 cut(s) 763
SacII CCGCGG 1 cut(s) 953
SatI GCNGC 5 cut(s) 644, 673, 918, 947, 950
Sau3AI GATC 8 cut(s) 280, 403, 435, 441, 621, 648, 717, 771
Sau96I GGNCC 4 cut(s) 763, 778, 843, 1004
SchI GAGTC 3 cut(s) 113, 173, 407
ScrFI CCNGG 5 cut(s) 465, 611, 715, 776, 1007
SfaNI GCATC 1 cut(s) 952
SfcI CTRYAG 1 cut(s) 999
Sfr303I CCGCGG 1 cut(s) 953
SgrBI CCGCGG 1 cut(s) 953
SinI GGWCC 2 cut(s) 763, 778
SmiMI CAYNNNNRTG 1 cut(s) 794
Sse9I AATT 2 cut(s) 565, 626
StyD4I CCNGG 5 cut(s) 463, 609, 713, 774, 1005
StyI CCWWGG 3 cut(s) 123, 846, 1036
TaaI ACNGT 3 cut(s) 767, 986, 1000
TaiI ACGT 6 cut(s) 545, 558, 711, 798, 874, 945
TaqI TCGA 6 cut(s) 216, 417, 434, 563, 624, 690
TasI AATT 2 cut(s) 565, 626
TauI GCSGC 4 cut(s) 646, 920, 949, 952
TfiI GAWTC 1 cut(s) 578
TscAI CASTG 2 cut(s) 991, 1003
TseI GCWGC 1 cut(s) 672
TspDTI ATGAA 3 cut(s) 136, 778, 959
TspGWI ACGGA 1 cut(s) 776
TspRI CASTG 2 cut(s) 991, 1003
VpaK11BI GGWCC 2 cut(s) 763, 778
XmiI GTMKAC 1 cut(s) 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.