Rh1DG345100

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0015693
Physical Location & Seq
Forward (+)
56877115 .. 56879091
1977 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG345100.1

Sequence Viewer

Length: 1053 bp
ATGTCCACCGCCACCGCCACCGCCACCTCCATTTTCCTCTTCCTCTTCTCCCTCCTCCTTACCACCCACTCCAAACCCATCCCCCACCTCACCTCCCCCTACCTCTCCCCCGCCACCATCTCCGCCAACTACGACTCCATGGTCAAGAACTTCAAAATCTTCATCTACAAGCCAAATCCTCACTTCACTTACGACTCCCCCGTCCAGTCTCTCTTCTACACCGCCCTCCTCGACAGCGACCTCGCCACTAACAACACCGACGAAGCCCACCTCTTCTTCCTCCCCTTCCCGCCAGATCTCCCCACGCGCTCCATCGCGCGTCTCATCCGCACCATCCGCACCGACCTCCCTTACTGGAACCGCACCCTCGGAGCTGACCACTTCTACCTCTCCTGCTCCGGCGTCGGGTACGAGTCGGACCGGGGCCTCGTCGAGCTGAAGAAGAACTCGATCCAGATCTCCTGCTTCCCGACCCCGCCGGGACAGCTCATCCCCCACAAGGACATCACTCTCCCCCCGCTCGCGTCCCCCCACGCGCCGACCACCAACACGACGACGTTTCTGGGCTACGTCAGGTCGAATTGGGTGAATGACTCCGCCATAGTCAACGGGTTACGCGCCAACCCGGAGTTCCTGATCGAATCGGAGCCGTCGACGCCGCAGATCTATGCACAGAGGCTCTCCAGCAGCAAGTTCTGTATCTTCGAGTACGGCGACGGCGACATGTCCGGGATCGGAGAGGCTCTGCGGTTCGGGTGCGTCCCCGTGGTGATTACGGACCGTCCGATCCAGGACCTGCCGTTCATGGACGTGCTGAGGTGGCAGGAGATGGCGCTGTTCGTGGGGAGGAGAGGTGGGGCCAAGGAGTTGGAGCGCGTGTTGGTACGCGCGTGCTGGGAGAGGCACGACCAGATGAGGCGGTTAGGTACGGCGGCGGGTCAGCATTTGGTGTGGAACGTGCCGCCGCGGGCTTTGGATGCGTTTCATACTTTGGTTTATCAGCTGTGGTTGCGACGCCACACGATTCGATACGTCCGGCGGGAGACGGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

350

Amino Acids

39.64

Weight (kDa)

8.55

Isoelectric Point (pI)

52.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 49 - 282 1.8e-28 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015693)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g23460
malus_domestica MD01G1140500.v1.1 MD07G1204800.v1.1
prunus_persica Prupe.2G241000_v2.0.a1
pyrus_communis pycom07g19130
rosa_chinensis RchiOBHm_Chr1g0368611
rosa_laevigata RLG00000020781 RLG00000027201
rosa_multiflora Rmu_sc0001791.1_g000003 Rmu_sc0011394.1_g000003
rosa_roxburghii Rroxscaffold_4G00288410
rosa_rugosa Rorug01G0343100
rosa_samantha Rh1AG350400 Rh1BG313700 Rh1CG328300 Rh1DG345100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 140, 200
Acc36I ACCTGC 1 cut(s) 804
AccBSI CCGCTC 1 cut(s) 520
AccI GTMKAC 1 cut(s) 653
AclWI GGATC 3 cut(s) 445, 740, 781
AcuI CTGAAG 1 cut(s) 458
AcyI GRCGYC 3 cut(s) 402, 656, 1015
AfaI GTAC 4 cut(s) 410, 710, 885, 928
AfiI CCNNNNNNNGG 2 cut(s) 405, 499
AflIII ACRYGT 1 cut(s) 723
AgsI TTSAA 1 cut(s) 154
AjiI CACGTC 1 cut(s) 811
AjnI CCWGG 1 cut(s) 789
AjuI GAANNNNNNNTTGG 2 cut(s) 614, 646
AloI GAACNNNNNNTCC 2 cut(s) 785, 817
AluBI AGCT 4 cut(s) 374, 436, 487, 1003
AluI AGCT 4 cut(s) 374, 436, 487, 1003
Alw26I GTCTC 3 cut(s) 213, 326, 1037
AlwI GGATC 3 cut(s) 445, 740, 781
AlwNI CAGNNNCTG 1 cut(s) 796
AoxI GGCC 2 cut(s) 424, 858
ApeKI GCWGC 1 cut(s) 687
AspLEI GCGC 7 cut(s) 309, 319, 538, 620, 835, 876, 890
AspS9I GGNCC 5 cut(s) 418, 424, 778, 793, 858
AsuC2I CCSGG 4 cut(s) 422, 480, 626, 730
AsuHPI GGTGA 3 cut(s) 82, 598, 781
AvaII GGWCC 3 cut(s) 418, 778, 793
BaeI ACNNNNGTAYC 2 cut(s) 875, 908
BbvCI CCTCAGC 1 cut(s) 815
BbvI GCAGC 1 cut(s) 699
BccI CCATC 5 cut(s) 86, 125, 320, 341, 823
BceAI ACGGC 5 cut(s) 634, 727, 733, 784, 945
BciT130I CCWGG 1 cut(s) 791
BcnI CCSGG 4 cut(s) 422, 480, 626, 730
BcoDI GTCTC 3 cut(s) 213, 326, 1037
BfoI RGCGCY 1 cut(s) 836
BfuAI ACCTGC 1 cut(s) 804
BglII AGATCT 3 cut(s) 295, 456, 663
BisI GCNGC 5 cut(s) 659, 688, 933, 962, 965
BlsI GCNGC 5 cut(s) 660, 689, 934, 963, 966
Bme1390I CCNGG 5 cut(s) 422, 480, 626, 730, 791
Bme18I GGWCC 3 cut(s) 418, 778, 793
BmgBI CACGTC 1 cut(s) 811
BmgT120I GGNCC 5 cut(s) 418, 424, 778, 793, 858
BmiI GGNNCC 4 cut(s) 359, 425, 648, 859
BmrFI CCNGG 5 cut(s) 422, 480, 626, 730, 791
BmsI GCATC 1 cut(s) 967
BpmI CTGGAG 1 cut(s) 667
Bpu10I CCTNAGC 1 cut(s) 815
BpuMI CCSGG 4 cut(s) 422, 480, 626, 730
BsaBI GATNNNNATC 1 cut(s) 455
BsaHI GRCGYC 3 cut(s) 402, 656, 1015
BsaJI CCNNGG 6 cut(s) 138, 367, 421, 765, 861, 965
BsaXI ACNNNNNCTCC 9 cut(s) 77, 107, 119, 149, 838, 863, 868, 893, 1034
Bsc4I CCNNNNNNNGG 2 cut(s) 405, 499
Bse1I ACTGG 2 cut(s) 205, 359
Bse8I GATNNNNATC 1 cut(s) 455
BseBI CCWGG 1 cut(s) 791
BseDI CCNNGG 6 cut(s) 138, 367, 421, 765, 861, 965
BseGI GGATG 5 cut(s) 78, 324, 333, 489, 982
BseJI GATNNNNATC 1 cut(s) 455
BseLI CCNNNNNNNGG 2 cut(s) 405, 499
BseMII CTCAG 1 cut(s) 806
BseNI ACTGG 2 cut(s) 205, 359
BseRI GAGGAG 3 cut(s) 44, 218, 862
BseXI GCAGC 1 cut(s) 699
BseYI CCCAGC 1 cut(s) 894
BshFI GGCC 2 cut(s) 426, 860
BsiSI CCGG 6 cut(s) 399, 421, 479, 626, 729, 1036
BslFI GGGAC 3 cut(s) 495, 511, 746
BslI CCNNNNNNNGG 2 cut(s) 405, 499
BsmAI GTCTC 3 cut(s) 213, 326, 1037
BsmBI CGTCTC 2 cut(s) 326, 1037
BsmFI GGGAC 3 cut(s) 495, 511, 746
BsnI GGCC 2 cut(s) 426, 860
Bsp143I GATC 7 cut(s) 295, 450, 456, 636, 663, 732, 786
Bsp19I CCATGG 1 cut(s) 138
BspANI GGCC 2 cut(s) 426, 860
BspCNI CTCAG 1 cut(s) 807
BspLI GGNNCC 4 cut(s) 359, 425, 648, 859
BspMI ACCTGC 1 cut(s) 804
BspPI GGATC 3 cut(s) 445, 740, 781
BsrBI CCGCTC 1 cut(s) 520
BsrI ACTGG 2 cut(s) 205, 359
BssECI CCNNGG 6 cut(s) 138, 367, 421, 765, 861, 965
BssMI GATC 7 cut(s) 295, 450, 456, 636, 663, 732, 786
BssNI GRCGYC 3 cut(s) 402, 656, 1015
BssT1I CCWWGG 2 cut(s) 138, 861
Bst2UI CCWGG 1 cut(s) 791
Bst4CI ACNGT 1 cut(s) 782
Bst6I CTCTTC 4 cut(s) 44, 50, 218, 278
BstACI GRCGYC 3 cut(s) 402, 656, 1015
BstC8I GCNNGC 3 cut(s) 522, 892, 969
BstDEI CTNAG 1 cut(s) 815
BstDSI CCRYGG 3 cut(s) 138, 765, 965
BstF5I GGATG 5 cut(s) 78, 324, 333, 489, 982
BstH2I RGCGCY 1 cut(s) 836
BstHHI GCGC 7 cut(s) 309, 319, 538, 620, 835, 876, 890
BstKTI GATC 7 cut(s) 298, 453, 459, 639, 666, 735, 789
BstMAI GTCTC 3 cut(s) 213, 326, 1037
BstMBI GATC 7 cut(s) 295, 450, 456, 636, 663, 732, 786
BstMWI GCNNNNNNNGC 6 cut(s) 336, 484, 655, 820, 977, 1009
BstNI CCWGG 1 cut(s) 791
BstNSI RCATGY 1 cut(s) 727
BstSCI CCNGG 5 cut(s) 420, 478, 624, 728, 789
BstV1I GCAGC 1 cut(s) 699
BstX2I RGATCY 3 cut(s) 295, 456, 663
BstXI CCANNNNNNTGG 1 cut(s) 868
BstYI RGATCY 3 cut(s) 295, 456, 663
BsuRI GGCC 2 cut(s) 426, 860
BtgI CCRYGG 3 cut(s) 138, 765, 965
BtgZI GCGATG 1 cut(s) 298
BtrI CACGTC 1 cut(s) 811
BtsCI GGATG 5 cut(s) 78, 324, 333, 489, 982
BveI ACCTGC 1 cut(s) 804
Cac8I GCNNGC 3 cut(s) 522, 892, 969
CaiI CAGNNNCTG 1 cut(s) 796
CfoI GCGC 7 cut(s) 309, 319, 538, 620, 835, 876, 890
Cfr13I GGNCC 5 cut(s) 418, 424, 778, 793, 858
Cfr42I CCGCGG 1 cut(s) 968
CpoI CGGWCCG 2 cut(s) 418, 778
CseI GACGC 6 cut(s) 308, 391, 513, 664, 748, 1023
Csp6I GTAC 4 cut(s) 409, 709, 884, 927
CspI CGGWCCG 2 cut(s) 418, 778
CviAII CATG 3 cut(s) 139, 724, 805
CviQI GTAC 4 cut(s) 409, 709, 884, 927
DdeI CTNAG 1 cut(s) 815
DpnI GATC 7 cut(s) 297, 452, 458, 638, 665, 734, 788
DpnII GATC 7 cut(s) 295, 450, 456, 636, 663, 732, 786
DrdI GACNNNNNNGTC 2 cut(s) 140, 200
DseDI GACNNNNNNGTC 2 cut(s) 140, 200
Eam1104I CTCTTC 4 cut(s) 44, 50, 218, 278
EarI CTCTTC 4 cut(s) 44, 50, 218, 278
EciI GGCGGA 2 cut(s) 112, 586
Eco130I CCWWGG 2 cut(s) 138, 861
Eco47I GGWCC 3 cut(s) 418, 778, 793
Eco57I CTGAAG 1 cut(s) 458
EcoO109I RGGNCCY 2 cut(s) 424, 793
EcoRII CCWGG 1 cut(s) 789
EcoT14I CCWWGG 2 cut(s) 138, 861
ErhI CCWWGG 2 cut(s) 138, 861
Esp3I CGTCTC 2 cut(s) 326, 1037
FaeI CATG 3 cut(s) 142, 727, 808
FaiI YATR 6 cut(s) 140, 602, 669, 725, 806, 987
FaqI GGGAC 3 cut(s) 495, 511, 746
FatI CATG 3 cut(s) 138, 723, 804
FauI CCCGC 7 cut(s) 118, 297, 483, 525, 928, 960, 1032
FblI GTMKAC 1 cut(s) 653
Fnu4HI GCNGC 5 cut(s) 659, 688, 933, 962, 965
FokI GGATG 5 cut(s) 65, 311, 320, 476, 989
Fsp4HI GCNGC 5 cut(s) 659, 688, 933, 962, 965
GlaI GCGC 7 cut(s) 308, 318, 537, 619, 834, 875, 889
GluI GCNGC 5 cut(s) 659, 688, 933, 962, 965
GsaI CCCAGC 1 cut(s) 898
GsuI CTGGAG 1 cut(s) 667
HaeII RGCGCY 1 cut(s) 836
HaeIII GGCC 2 cut(s) 426, 860
HapII CCGG 6 cut(s) 399, 421, 479, 626, 729, 1036
HgaI GACGC 6 cut(s) 308, 391, 513, 664, 748, 1023
HhaI GCGC 7 cut(s) 309, 319, 538, 620, 835, 876, 890
Hin1I GRCGYC 3 cut(s) 402, 656, 1015
Hin1II CATG 3 cut(s) 142, 727, 808
Hin6I GCGC 7 cut(s) 307, 317, 536, 618, 833, 874, 888
HinP1I GCGC 7 cut(s) 307, 317, 536, 618, 833, 874, 888
HincII GTYRAC 2 cut(s) 607, 654
HindII GTYRAC 2 cut(s) 607, 654
HinfI GANTC 6 cut(s) 134, 194, 413, 593, 641, 1024
HpaII CCGG 6 cut(s) 399, 421, 479, 626, 729, 1036
HphI GGTGA 3 cut(s) 82, 598, 781
Hpy166II GTNNAC 3 cut(s) 6, 607, 654
Hpy188I TCNGA 5 cut(s) 371, 418, 646, 737, 786
Hpy188III TCNNGA 4 cut(s) 145, 454, 469, 634
Hpy8I GTNNAC 3 cut(s) 6, 607, 654
Hpy99I CGWCG 9 cut(s) 263, 407, 434, 556, 559, 655, 658, 719, 1017
HpyAV CCTTC 1 cut(s) 295
HpyCH4III ACNGT 1 cut(s) 782
HpyCH4IV ACGT 5 cut(s) 557, 570, 810, 957, 1032
HpyCH4V TGCA 1 cut(s) 671
HpyF10VI GCNNNNNNNGC 6 cut(s) 336, 484, 655, 820, 977, 1009
HpyF3I CTNAG 1 cut(s) 815
HpySE526I ACGT 5 cut(s) 557, 570, 810, 957, 1032
Hsp92I GRCGYC 3 cut(s) 402, 656, 1015
Hsp92II CATG 3 cut(s) 142, 727, 808
HspAI GCGC 7 cut(s) 307, 317, 536, 618, 833, 874, 888
KspI CCGCGG 1 cut(s) 968
Kzo9I GATC 7 cut(s) 295, 450, 456, 636, 663, 732, 786
LmnI GCTCC 5 cut(s) 314, 371, 401, 646, 871
Lsp1109I GCAGC 1 cut(s) 699
LweI GCATC 1 cut(s) 967
MaeII ACGT 5 cut(s) 557, 570, 810, 957, 1032
MaeIII GTNAC 1 cut(s) 612
MalI GATC 7 cut(s) 297, 452, 458, 638, 665, 734, 788
MbiI CCGCTC 1 cut(s) 520
MboI GATC 7 cut(s) 295, 450, 456, 636, 663, 732, 786
MboII GAAGA 9 cut(s) 31, 37, 151, 205, 265, 268, 451, 454, 694
MflI RGATCY 3 cut(s) 295, 456, 663
MluCI AATT 1 cut(s) 580
MlyI GAGTC 4 cut(s) 128, 188, 422, 587
MmeI TCCRAC 2 cut(s) 396, 849
MslI CAYNNNNRTG 1 cut(s) 809
MspA1I CMGCKG 2 cut(s) 967, 1003
MspI CCGG 6 cut(s) 399, 421, 479, 626, 729, 1036
MspR9I CCNGG 5 cut(s) 422, 480, 626, 730, 791
MvaI CCWGG 1 cut(s) 791
MwoI GCNNNNNNNGC 6 cut(s) 336, 484, 655, 820, 977, 1009
NciI CCSGG 4 cut(s) 422, 480, 626, 730
NcoI CCATGG 1 cut(s) 138
NdeII GATC 7 cut(s) 295, 450, 456, 636, 663, 732, 786
NlaIII CATG 3 cut(s) 142, 727, 808
NlaIV GGNNCC 4 cut(s) 359, 425, 648, 859
NspI RCATGY 1 cut(s) 727
PciI ACATGT 1 cut(s) 723
PcsI WCGNNNNNNNCGW 5 cut(s) 198, 650, 711, 717, 782
PfeI GAWTC 2 cut(s) 641, 1024
PfoI TCCNGGA 2 cut(s) 728, 789
PkrI GCNGC 5 cut(s) 660, 689, 934, 963, 966
PleI GAGTC 4 cut(s) 128, 188, 421, 587
PpsI GAGTC 4 cut(s) 128, 188, 421, 587
PpuMI RGGWCCY 1 cut(s) 793
PscI ACATGT 1 cut(s) 723
Psp5II RGGWCCY 1 cut(s) 793
Psp6I CCWGG 1 cut(s) 789
PspFI CCCAGC 1 cut(s) 894
PspGI CCWGG 1 cut(s) 789
PspN4I GGNNCC 4 cut(s) 359, 425, 648, 859
PspPI GGNCC 5 cut(s) 418, 424, 778, 793, 858
PspPPI RGGWCCY 1 cut(s) 793
PstNI CAGNNNCTG 1 cut(s) 796
PsuI RGATCY 3 cut(s) 295, 456, 663
PvuII CAGCTG 1 cut(s) 1003
RsaI GTAC 4 cut(s) 410, 710, 885, 928
RsaNI GTAC 4 cut(s) 409, 709, 884, 927
RseI CAYNNNNRTG 1 cut(s) 809
Rsr2I CGGWCCG 2 cut(s) 418, 778
RsrII CGGWCCG 2 cut(s) 418, 778
SacII CCGCGG 1 cut(s) 968
SalI GTCGAC 1 cut(s) 652
SatI GCNGC 5 cut(s) 659, 688, 933, 962, 965
Sau3AI GATC 7 cut(s) 295, 450, 456, 636, 663, 732, 786
Sau96I GGNCC 5 cut(s) 418, 424, 778, 793, 858
SchI GAGTC 4 cut(s) 128, 188, 422, 587
ScrFI CCNGG 5 cut(s) 422, 480, 626, 730, 791
SfaNI GCATC 1 cut(s) 967
Sfr303I CCGCGG 1 cut(s) 968
SgrBI CCGCGG 1 cut(s) 968
SgrDI CGTCGACG 1 cut(s) 652
SinI GGWCC 3 cut(s) 418, 778, 793
SmiMI CAYNNNNRTG 1 cut(s) 809
Sse9I AATT 1 cut(s) 580
StyD4I CCNGG 5 cut(s) 420, 478, 624, 728, 789
StyI CCWWGG 2 cut(s) 138, 861
TaaI ACNGT 1 cut(s) 782
TaiI ACGT 5 cut(s) 560, 573, 813, 960, 1035
TaqI TCGA 8 cut(s) 231, 432, 449, 578, 639, 653, 705, 1027
TasI AATT 1 cut(s) 580
TauI GCSGC 4 cut(s) 661, 935, 964, 967
TfiI GAWTC 2 cut(s) 641, 1024
TseI GCWGC 1 cut(s) 687
TspDTI ATGAA 3 cut(s) 151, 793, 974
TspGWI ACGGA 1 cut(s) 791
VpaK11BI GGWCC 3 cut(s) 418, 778, 793
XceI RCATGY 1 cut(s) 727
XmiI GTMKAC 1 cut(s) 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.