RLG00000020781

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0015693
Physical Location & Seq
Forward (+)
68662755 .. 68665508
2754 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020781

Sequence Viewer

Length: 315 bp
ATGCTCTCCAACAACAAGTTCTGTATCTTTGAGTATGACGACGGCGACATGTCCAGGATCGGAGAGGATCTGAGGTTCGAGTGCGTCCCTGTGGTGACTACGGACCGCCGGATCCAGGACCTGCTGTTCATGGACGTGCTGCAGTGGCAGGAGATGGCGCTGTTCATGGGGTGGAGAGGTGGGGCCAAGGAGTTAGAGGTTCTAGGGACGATTCAATATGGGTCTTCGCTGAGGTTGTCTGTCTGGGTTCGGTTGCCGGCGGTCAGTTCAGATGGCAGTGGAGGCAGAGAGAAAGAATGGGGGTCGGAGGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

105

Amino Acids

11.81

Weight (kDa)

4.55

Isoelectric Point (pI)

50.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015693)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g23460
malus_domestica MD01G1140500.v1.1 MD07G1204800.v1.1
prunus_persica Prupe.2G241000_v2.0.a1
pyrus_communis pycom07g19130
rosa_chinensis RchiOBHm_Chr1g0368611
rosa_laevigata RLG00000020781 RLG00000027201
rosa_multiflora Rmu_sc0001791.1_g000003 Rmu_sc0011394.1_g000003
rosa_roxburghii Rroxscaffold_4G00288410
rosa_rugosa Rorug01G0343100
rosa_samantha Rh1AG350400 Rh1BG313700 Rh1CG328300 Rh1DG345100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 129
AciI CCGC 2 cut(s) 106, 260
AclWI GGATC 4 cut(s) 65, 75, 106, 119
AfiI CCNNNNNNNGG 1 cut(s) 115
AflIII ACRYGT 1 cut(s) 48
AgsI TTSAA 1 cut(s) 215
AjiI CACGTC 1 cut(s) 136
AjnI CCWGG 2 cut(s) 53, 114
AjuI GAANNNNNNNTTGG 1 cut(s) 34
AloI GAACNNNNNNTCC 4 cut(s) 59, 91, 110, 142
AlwI GGATC 4 cut(s) 65, 75, 106, 119
AlwNI CAGNNNCTG 1 cut(s) 121
AoxI GGCC 1 cut(s) 183
ApeKI GCWGC 1 cut(s) 139
AspLEI GCGC 1 cut(s) 160
AspS9I GGNCC 3 cut(s) 103, 118, 183
AsuHPI GGTGA 1 cut(s) 106
AvaII GGWCC 2 cut(s) 103, 118
BamHI GGATCC 1 cut(s) 111
BbsI GAAGAC 1 cut(s) 216
BbvCI CCTCAGC 1 cut(s) 230
BbvI GCAGC 1 cut(s) 126
BccI CCATC 2 cut(s) 148, 266
BceAI ACGGC 1 cut(s) 58
BciT130I CCWGG 2 cut(s) 55, 116
BfaI CTAG 1 cut(s) 203
BfmI CTRYAG 1 cut(s) 140
BfoI RGCGCY 1 cut(s) 161
BfuAI ACCTGC 1 cut(s) 129
BisI GCNGC 1 cut(s) 140
BlsI GCNGC 1 cut(s) 141
Bme1390I CCNGG 2 cut(s) 55, 116
Bme18I GGWCC 2 cut(s) 103, 118
BmgBI CACGTC 1 cut(s) 136
BmgT120I GGNCC 3 cut(s) 103, 118, 183
BmiI GGNNCC 2 cut(s) 113, 184
BmrFI CCNGG 2 cut(s) 55, 116
BpiI GAAGAC 1 cut(s) 216
Bpu10I CCTNAGC 1 cut(s) 230
BsaJI CCNNGG 1 cut(s) 186
Bsc4I CCNNNNNNNGG 1 cut(s) 115
Bse118I RCCGGY 1 cut(s) 256
BseBI CCWGG 2 cut(s) 55, 116
BseDI CCNNGG 1 cut(s) 186
BseLI CCNNNNNNNGG 1 cut(s) 115
BseMII CTCAG 2 cut(s) 62, 221
BseXI GCAGC 1 cut(s) 126
BshFI GGCC 1 cut(s) 185
BsiSI CCGG 2 cut(s) 109, 257
BslFI GGGAC 2 cut(s) 71, 220
BslI CCNNNNNNNGG 1 cut(s) 115
BsmFI GGGAC 2 cut(s) 71, 220
BsnI GGCC 1 cut(s) 185
Bsp143I GATC 3 cut(s) 57, 67, 111
BspACI CCGC 2 cut(s) 106, 260
BspANI GGCC 1 cut(s) 185
BspCNI CTCAG 2 cut(s) 63, 222
BspLI GGNNCC 2 cut(s) 113, 184
BspMAI CTGCAG 1 cut(s) 144
BspMI ACCTGC 1 cut(s) 129
BspPI GGATC 4 cut(s) 65, 75, 106, 119
BsrFI RCCGGY 1 cut(s) 256
BssAI RCCGGY 1 cut(s) 256
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 3 cut(s) 57, 67, 111
BssT1I CCWWGG 1 cut(s) 186
Bst2UI CCWGG 2 cut(s) 55, 116
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 2 cut(s) 71, 230
BstH2I RGCGCY 1 cut(s) 161
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 3 cut(s) 60, 70, 114
BstMBI GATC 3 cut(s) 57, 67, 111
BstMWI GCNNNNNNNGC 2 cut(s) 145, 282
BstNI CCWGG 2 cut(s) 55, 116
BstNSI RCATGY 1 cut(s) 52
BstSCI CCNGG 2 cut(s) 53, 114
BstSFI CTRYAG 1 cut(s) 140
BstV1I GCAGC 1 cut(s) 126
BstV2I GAAGAC 1 cut(s) 216
BstX2I RGATCY 2 cut(s) 67, 111
BstYI RGATCY 2 cut(s) 67, 111
BsuRI GGCC 1 cut(s) 185
BtrI CACGTC 1 cut(s) 136
BtsI GCAGTG 2 cut(s) 149, 283
BtsIMutI CAGTG 2 cut(s) 149, 283
BveI ACCTGC 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 258
CaiI CAGNNNCTG 1 cut(s) 121
CfoI GCGC 1 cut(s) 160
Cfr10I RCCGGY 1 cut(s) 256
Cfr13I GGNCC 3 cut(s) 103, 118, 183
CpoI CGGWCCG 1 cut(s) 103
CseI GACGC 1 cut(s) 73
CspI CGGWCCG 1 cut(s) 103
CviAII CATG 3 cut(s) 49, 130, 166
CviJI RGCY 1 cut(s) 185
CviKI_1 RGCY 1 cut(s) 185
DdeI CTNAG 2 cut(s) 71, 230
DpnI GATC 3 cut(s) 59, 69, 113
DpnII GATC 3 cut(s) 57, 67, 111
Eco130I CCWWGG 1 cut(s) 186
Eco47I GGWCC 2 cut(s) 103, 118
EcoO109I RGGNCCY 1 cut(s) 118
EcoRII CCWGG 2 cut(s) 53, 114
EcoT14I CCWWGG 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 3 cut(s) 52, 133, 169
FaiI YATR 5 cut(s) 36, 50, 131, 167, 219
FaqI GGGAC 2 cut(s) 71, 220
FatI CATG 3 cut(s) 48, 129, 165
Fnu4HI GCNGC 1 cut(s) 140
Fsp4HI GCNGC 1 cut(s) 140
FspBI CTAG 1 cut(s) 203
GlaI GCGC 1 cut(s) 159
GluI GCNGC 1 cut(s) 140
HaeII RGCGCY 1 cut(s) 161
HaeIII GGCC 1 cut(s) 185
HapII CCGG 2 cut(s) 109, 257
HgaI GACGC 1 cut(s) 73
HhaI GCGC 1 cut(s) 160
Hin1II CATG 3 cut(s) 52, 133, 169
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HinfI GANTC 1 cut(s) 211
HpaII CCGG 2 cut(s) 109, 257
HphI GGTGA 1 cut(s) 106
Hpy188I TCNGA 4 cut(s) 62, 72, 271, 307
Hpy99I CGWCG 1 cut(s) 44
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 1 cut(s) 142
HpyF10VI GCNNNNNNNGC 2 cut(s) 145, 282
HpyF3I CTNAG 2 cut(s) 71, 230
HpySE526I ACGT 1 cut(s) 135
Hsp92II CATG 3 cut(s) 52, 133, 169
HspAI GCGC 1 cut(s) 158
KroI GCCGGC 1 cut(s) 256
KroNI GCCGGC 1 cut(s) 258
Kzo9I GATC 3 cut(s) 57, 67, 111
Lsp1109I GCAGC 1 cut(s) 126
MaeI CTAG 1 cut(s) 203
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 94
MalI GATC 3 cut(s) 59, 69, 113
MboI GATC 3 cut(s) 57, 67, 111
MboII GAAGA 1 cut(s) 216
MflI RGATCY 2 cut(s) 67, 111
MmeI TCCRAC 2 cut(s) 33, 285
MnlI CCTC 7 cut(s) 58, 66, 170, 190, 225, 275, 301
MroNI GCCGGC 1 cut(s) 256
MslI CAYNNNNRTG 1 cut(s) 134
MspI CCGG 2 cut(s) 109, 257
MspR9I CCNGG 2 cut(s) 55, 116
MvaI CCWGG 2 cut(s) 55, 116
MwoI GCNNNNNNNGC 2 cut(s) 145, 282
NaeI GCCGGC 1 cut(s) 258
NdeII GATC 3 cut(s) 57, 67, 111
NgoMIV GCCGGC 1 cut(s) 256
NlaIII CATG 3 cut(s) 52, 133, 169
NlaIV GGNNCC 2 cut(s) 113, 184
NmuCI GTSAC 1 cut(s) 94
NspI RCATGY 1 cut(s) 52
PciI ACATGT 1 cut(s) 48
PdiI GCCGGC 1 cut(s) 258
PfeI GAWTC 1 cut(s) 211
PfoI TCCNGGA 2 cut(s) 53, 114
PkrI GCNGC 1 cut(s) 141
PpuMI RGGWCCY 1 cut(s) 118
PscI ACATGT 1 cut(s) 48
Psp5II RGGWCCY 1 cut(s) 118
Psp6I CCWGG 2 cut(s) 53, 114
PspGI CCWGG 2 cut(s) 53, 114
PspN4I GGNNCC 2 cut(s) 113, 184
PspPI GGNCC 3 cut(s) 103, 118, 183
PspPPI RGGWCCY 1 cut(s) 118
PstI CTGCAG 1 cut(s) 144
PstNI CAGNNNCTG 1 cut(s) 121
PsuI RGATCY 2 cut(s) 67, 111
RseI CAYNNNNRTG 1 cut(s) 134
Rsr2I CGGWCCG 1 cut(s) 103
RsrII CGGWCCG 1 cut(s) 103
SatI GCNGC 1 cut(s) 140
Sau3AI GATC 3 cut(s) 57, 67, 111
Sau96I GGNCC 3 cut(s) 103, 118, 183
ScrFI CCNGG 2 cut(s) 55, 116
SetI ASST 6 cut(s) 77, 123, 138, 181, 201, 236
SfcI CTRYAG 1 cut(s) 140
SinI GGWCC 2 cut(s) 103, 118
SmiMI CAYNNNNRTG 1 cut(s) 134
SsiI CCGC 2 cut(s) 106, 260
SspMI CTAG 1 cut(s) 203
StyD4I CCNGG 2 cut(s) 53, 114
StyI CCWWGG 1 cut(s) 186
TaiI ACGT 1 cut(s) 138
TaqI TCGA 1 cut(s) 78
TfiI GAWTC 1 cut(s) 211
TscAI CASTG 2 cut(s) 149, 283
TseFI GTSAC 1 cut(s) 94
TseI GCWGC 1 cut(s) 139
Tsp45I GTSAC 1 cut(s) 94
TspDTI ATGAA 2 cut(s) 118, 154
TspGWI ACGGA 1 cut(s) 116
TspRI CASTG 2 cut(s) 149, 283
VpaK11BI GGWCC 2 cut(s) 103, 118
XceI RCATGY 1 cut(s) 52
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.