Rmu_sc0011394.1_g000003

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011394.1
OG0015693
Physical Location & Seq
Reverse (-)
8419 .. 9459
1041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011394.1_g000003.1.cds

Sequence Viewer

Length: 1041 bp
atgtccaccaccacctacattttcctcttcctcttctccctcctcctcaccacccactccaaacccatcccccacctcacctccccctacctctcccccgccaccatctccgccaactacgactccatggtcaagaacttcaaaatcttcatctacaagccaaatcctcacttcacttacgactcccccgtccagtctctcttctacaccgccctcctcgacagcgacctcgccaccaacaacaccgacgaagcccacctcttcttcctccccttcccgccagatctccccacgcgctccatcgcgcgtctcatccgcaccatccgcaccgacctcccttactggaaccgcaccctcggagctgaccacttctacctctcctgctccggcgtcgggtacgagtccgaccgcaacctcgtcgagctgaagaagaactcgatccagatctcctgcttcccgaccccgccggggcagctcatccctcacaaggacatcactctccccccgctcgcgtccccccacgcgccgaccgccaacacgacgacgtttctgggctacgtcaggtcgaattgggtgaatgattccgccatagtcaacgagttacgcgccaacccggagttcctgatcgaatcggagccgtcgacgccgcagatctatgcacagaggctctccagcagcaagttctgtatcttcgagtacggcgacggcgacatgtccgggatcggagaggctctgcggttcgggtgcgtccccgtggtgattacggaccgtccgatccaggacctgccgttcatggacgtgctgaggtggcaggagatggcgctgttcgtggggaggagaggtggggccaaggagttggagcgcgtgttggtacgcgcgtgctgggagaggcacgaccagatgaggcggttgggtgcggcggcgggtcagcatttggtgtggaacgtgccgccgcgggctttggatgcgtttcatactttggtttatcagctgtggttgcgacgccacacgattcgatacgtccggcgggagacggtgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

346

Amino Acids

39.49

Weight (kDa)

8.23

Isoelectric Point (pI)

54.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015693)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g23460
malus_domestica MD01G1140500.v1.1 MD07G1204800.v1.1
prunus_persica Prupe.2G241000_v2.0.a1
pyrus_communis pycom07g19130
rosa_chinensis RchiOBHm_Chr1g0368611
rosa_laevigata RLG00000020781 RLG00000027201
rosa_multiflora Rmu_sc0001791.1_g000003 Rmu_sc0011394.1_g000003
rosa_roxburghii Rroxscaffold_4G00288410
rosa_rugosa Rorug01G0343100
rosa_samantha Rh1AG350400 Rh1BG313700 Rh1CG328300 Rh1DG345100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 128, 188
Acc36I ACCTGC 1 cut(s) 792
AccBSI CCGCTC 1 cut(s) 508
AccI GTMKAC 1 cut(s) 641
AclWI GGATC 3 cut(s) 433, 728, 769
AcuI CTGAAG 1 cut(s) 446
AcyI GRCGYC 3 cut(s) 390, 644, 1003
AfaI GTAC 3 cut(s) 398, 698, 873
AfiI CCNNNNNNNGG 3 cut(s) 393, 468, 487
AflIII ACRYGT 1 cut(s) 711
AgsI TTSAA 1 cut(s) 142
AjiI CACGTC 1 cut(s) 799
AjnI CCWGG 1 cut(s) 777
AjuI GAANNNNNNNTTGG 2 cut(s) 602, 634
AloI GAACNNNNNNTCC 2 cut(s) 773, 805
AluBI AGCT 4 cut(s) 362, 424, 475, 991
AluI AGCT 4 cut(s) 362, 424, 475, 991
Alw26I GTCTC 3 cut(s) 201, 314, 1025
AlwI GGATC 3 cut(s) 433, 728, 769
AlwNI CAGNNNCTG 1 cut(s) 784
AoxI GGCC 1 cut(s) 846
ApeKI GCWGC 2 cut(s) 472, 675
AspLEI GCGC 7 cut(s) 297, 307, 526, 608, 823, 864, 878
AspS9I GGNCC 3 cut(s) 766, 781, 846
AsuC2I CCSGG 3 cut(s) 468, 614, 718
AsuHPI GGTGA 4 cut(s) 40, 70, 586, 769
AvaII GGWCC 2 cut(s) 766, 781
BaeI ACNNNNGTAYC 2 cut(s) 863, 896
BbvCI CCTCAGC 1 cut(s) 803
BbvI GCAGC 2 cut(s) 484, 687
BccI CCATC 5 cut(s) 74, 113, 308, 329, 811
BceAI ACGGC 4 cut(s) 622, 715, 721, 772
BcgI CGANNNNNNTGC 2 cut(s) 400, 434
BciT130I CCWGG 1 cut(s) 779
BcnI CCSGG 3 cut(s) 468, 614, 718
BcoDI GTCTC 3 cut(s) 201, 314, 1025
BfoI RGCGCY 1 cut(s) 824
BfuAI ACCTGC 1 cut(s) 792
BglII AGATCT 3 cut(s) 283, 444, 651
BisI GCNGC 7 cut(s) 473, 647, 676, 918, 921, 950, 953
BlsI GCNGC 7 cut(s) 474, 648, 677, 919, 922, 951, 954
Bme1390I CCNGG 4 cut(s) 468, 614, 718, 779
Bme18I GGWCC 2 cut(s) 766, 781
BmgBI CACGTC 1 cut(s) 799
BmgT120I GGNCC 3 cut(s) 766, 781, 846
BmiI GGNNCC 3 cut(s) 347, 636, 847
BmrFI CCNGG 4 cut(s) 468, 614, 718, 779
BmsI GCATC 1 cut(s) 955
BpmI CTGGAG 1 cut(s) 655
Bpu10I CCTNAGC 1 cut(s) 803
BpuMI CCSGG 3 cut(s) 468, 614, 718
BsaBI GATNNNNATC 1 cut(s) 443
BsaHI GRCGYC 3 cut(s) 390, 644, 1003
BsaJI CCNNGG 6 cut(s) 126, 355, 467, 753, 849, 953
BsaXI ACNNNNNCTCC 9 cut(s) 65, 95, 107, 137, 826, 851, 856, 881, 1022
Bsc4I CCNNNNNNNGG 3 cut(s) 393, 468, 487
Bse1I ACTGG 2 cut(s) 193, 347
Bse8I GATNNNNATC 1 cut(s) 443
BseBI CCWGG 1 cut(s) 779
BseDI CCNNGG 6 cut(s) 126, 355, 467, 753, 849, 953
BseGI GGATG 5 cut(s) 66, 312, 321, 477, 970
BseJI GATNNNNATC 1 cut(s) 443
BseLI CCNNNNNNNGG 3 cut(s) 393, 468, 487
BseMII CTCAG 1 cut(s) 794
BseNI ACTGG 2 cut(s) 193, 347
BseRI GAGGAG 4 cut(s) 32, 35, 206, 850
BseXI GCAGC 2 cut(s) 484, 687
BseYI CCCAGC 1 cut(s) 882
Bsh1285I CGRYCG 2 cut(s) 409, 531
BshFI GGCC 1 cut(s) 848
BsiEI CGRYCG 2 cut(s) 409, 531
BsiSI CCGG 5 cut(s) 387, 467, 614, 717, 1024
BslFI GGGAC 2 cut(s) 499, 734
BslI CCNNNNNNNGG 3 cut(s) 393, 468, 487
BsmAI GTCTC 3 cut(s) 201, 314, 1025
BsmBI CGTCTC 2 cut(s) 314, 1025
BsmFI GGGAC 2 cut(s) 499, 734
BsnI GGCC 1 cut(s) 848
Bsp143I GATC 7 cut(s) 283, 438, 444, 624, 651, 720, 774
Bsp19I CCATGG 1 cut(s) 126
BspANI GGCC 1 cut(s) 848
BspCNI CTCAG 1 cut(s) 795
BspLI GGNNCC 3 cut(s) 347, 636, 847
BspMI ACCTGC 1 cut(s) 792
BspPI GGATC 3 cut(s) 433, 728, 769
BsrBI CCGCTC 1 cut(s) 508
BsrI ACTGG 2 cut(s) 193, 347
BssECI CCNNGG 6 cut(s) 126, 355, 467, 753, 849, 953
BssMI GATC 7 cut(s) 283, 438, 444, 624, 651, 720, 774
BssNI GRCGYC 3 cut(s) 390, 644, 1003
BssT1I CCWWGG 2 cut(s) 126, 849
Bst2UI CCWGG 1 cut(s) 779
Bst4CI ACNGT 2 cut(s) 770, 1036
Bst6I CTCTTC 4 cut(s) 32, 38, 206, 266
BstACI GRCGYC 3 cut(s) 390, 644, 1003
BstC8I GCNNGC 3 cut(s) 510, 880, 957
BstDEI CTNAG 1 cut(s) 803
BstDSI CCRYGG 3 cut(s) 126, 753, 953
BstF5I GGATG 5 cut(s) 66, 312, 321, 477, 970
BstH2I RGCGCY 1 cut(s) 824
BstHHI GCGC 7 cut(s) 297, 307, 526, 608, 823, 864, 878
BstKTI GATC 7 cut(s) 286, 441, 447, 627, 654, 723, 777
BstMAI GTCTC 3 cut(s) 201, 314, 1025
BstMBI GATC 7 cut(s) 283, 438, 444, 624, 651, 720, 774
BstMCI CGRYCG 2 cut(s) 409, 531
BstMWI GCNNNNNNNGC 7 cut(s) 324, 472, 530, 643, 808, 965, 997
BstNI CCWGG 1 cut(s) 779
BstNSI RCATGY 1 cut(s) 715
BstSCI CCNGG 4 cut(s) 466, 612, 716, 777
BstV1I GCAGC 2 cut(s) 484, 687
BstX2I RGATCY 3 cut(s) 283, 444, 651
BstXI CCANNNNNNTGG 1 cut(s) 856
BstYI RGATCY 3 cut(s) 283, 444, 651
BsuRI GGCC 1 cut(s) 848
BtgI CCRYGG 3 cut(s) 126, 753, 953
BtgZI GCGATG 1 cut(s) 286
BtrI CACGTC 1 cut(s) 799
BtsCI GGATG 5 cut(s) 66, 312, 321, 477, 970
BveI ACCTGC 1 cut(s) 792
Cac8I GCNNGC 3 cut(s) 510, 880, 957
CaiI CAGNNNCTG 1 cut(s) 784
CfoI GCGC 7 cut(s) 297, 307, 526, 608, 823, 864, 878
Cfr13I GGNCC 3 cut(s) 766, 781, 846
Cfr42I CCGCGG 1 cut(s) 956
CpoI CGGWCCG 1 cut(s) 766
CseI GACGC 6 cut(s) 296, 379, 501, 652, 736, 1011
Csp6I GTAC 3 cut(s) 397, 697, 872
CspI CGGWCCG 1 cut(s) 766
CviAII CATG 3 cut(s) 127, 712, 793
CviQI GTAC 3 cut(s) 397, 697, 872
DdeI CTNAG 1 cut(s) 803
DpnI GATC 7 cut(s) 285, 440, 446, 626, 653, 722, 776
DpnII GATC 7 cut(s) 283, 438, 444, 624, 651, 720, 774
DrdI GACNNNNNNGTC 2 cut(s) 128, 188
DseDI GACNNNNNNGTC 2 cut(s) 128, 188
Eam1104I CTCTTC 4 cut(s) 32, 38, 206, 266
EarI CTCTTC 4 cut(s) 32, 38, 206, 266
EciI GGCGGA 2 cut(s) 100, 574
Eco130I CCWWGG 2 cut(s) 126, 849
Eco47I GGWCC 2 cut(s) 766, 781
Eco57I CTGAAG 1 cut(s) 446
EcoO109I RGGNCCY 1 cut(s) 781
EcoRII CCWGG 1 cut(s) 777
EcoT14I CCWWGG 2 cut(s) 126, 849
ErhI CCWWGG 2 cut(s) 126, 849
Esp3I CGTCTC 2 cut(s) 314, 1025
FaeI CATG 3 cut(s) 130, 715, 796
FaiI YATR 6 cut(s) 128, 590, 657, 713, 794, 975
FaqI GGGAC 2 cut(s) 499, 734
FatI CATG 3 cut(s) 126, 711, 792
FauI CCCGC 7 cut(s) 106, 285, 471, 513, 916, 948, 1020
FblI GTMKAC 1 cut(s) 641
Fnu4HI GCNGC 7 cut(s) 473, 647, 676, 918, 921, 950, 953
FokI GGATG 5 cut(s) 53, 299, 308, 464, 977
Fsp4HI GCNGC 7 cut(s) 473, 647, 676, 918, 921, 950, 953
GlaI GCGC 7 cut(s) 296, 306, 525, 607, 822, 863, 877
GluI GCNGC 7 cut(s) 473, 647, 676, 918, 921, 950, 953
GsaI CCCAGC 1 cut(s) 886
GsuI CTGGAG 1 cut(s) 655
HaeII RGCGCY 1 cut(s) 824
HaeIII GGCC 1 cut(s) 848
HapII CCGG 5 cut(s) 387, 467, 614, 717, 1024
HgaI GACGC 6 cut(s) 296, 379, 501, 652, 736, 1011
HhaI GCGC 7 cut(s) 297, 307, 526, 608, 823, 864, 878
Hin1I GRCGYC 3 cut(s) 390, 644, 1003
Hin1II CATG 3 cut(s) 130, 715, 796
Hin6I GCGC 7 cut(s) 295, 305, 524, 606, 821, 862, 876
HinP1I GCGC 7 cut(s) 295, 305, 524, 606, 821, 862, 876
HincII GTYRAC 2 cut(s) 595, 642
HindII GTYRAC 2 cut(s) 595, 642
HinfI GANTC 6 cut(s) 122, 182, 401, 581, 629, 1012
HpaII CCGG 5 cut(s) 387, 467, 614, 717, 1024
HphI GGTGA 4 cut(s) 40, 70, 586, 769
Hpy166II GTNNAC 3 cut(s) 6, 595, 642
Hpy188I TCNGA 5 cut(s) 359, 406, 634, 725, 774
Hpy188III TCNNGA 4 cut(s) 133, 442, 457, 622
Hpy8I GTNNAC 3 cut(s) 6, 595, 642
Hpy99I CGWCG 9 cut(s) 251, 395, 422, 544, 547, 643, 646, 707, 1005
HpyAV CCTTC 1 cut(s) 283
HpyCH4III ACNGT 2 cut(s) 770, 1036
HpyCH4IV ACGT 5 cut(s) 545, 558, 798, 945, 1020
HpyCH4V TGCA 1 cut(s) 659
HpyF10VI GCNNNNNNNGC 7 cut(s) 324, 472, 530, 643, 808, 965, 997
HpyF3I CTNAG 1 cut(s) 803
HpySE526I ACGT 5 cut(s) 545, 558, 798, 945, 1020
Hsp92I GRCGYC 3 cut(s) 390, 644, 1003
Hsp92II CATG 3 cut(s) 130, 715, 796
HspAI GCGC 7 cut(s) 295, 305, 524, 606, 821, 862, 876
KspI CCGCGG 1 cut(s) 956
Kzo9I GATC 7 cut(s) 283, 438, 444, 624, 651, 720, 774
LmnI GCTCC 5 cut(s) 302, 359, 389, 634, 859
Lsp1109I GCAGC 2 cut(s) 484, 687
LweI GCATC 1 cut(s) 955
MaeII ACGT 5 cut(s) 545, 558, 798, 945, 1020
MaeIII GTNAC 1 cut(s) 600
MalI GATC 7 cut(s) 285, 440, 446, 626, 653, 722, 776
MbiI CCGCTC 1 cut(s) 508
MboI GATC 7 cut(s) 283, 438, 444, 624, 651, 720, 774
MboII GAAGA 9 cut(s) 19, 25, 139, 193, 253, 256, 439, 442, 682
MflI RGATCY 3 cut(s) 283, 444, 651
MluCI AATT 1 cut(s) 568
MlyI GAGTC 3 cut(s) 116, 176, 410
MmeI TCCRAC 2 cut(s) 429, 837
MslI CAYNNNNRTG 1 cut(s) 797
MspA1I CMGCKG 2 cut(s) 955, 991
MspI CCGG 5 cut(s) 387, 467, 614, 717, 1024
MspR9I CCNGG 4 cut(s) 468, 614, 718, 779
MvaI CCWGG 1 cut(s) 779
MwoI GCNNNNNNNGC 7 cut(s) 324, 472, 530, 643, 808, 965, 997
NciI CCSGG 3 cut(s) 468, 614, 718
NcoI CCATGG 1 cut(s) 126
NdeII GATC 7 cut(s) 283, 438, 444, 624, 651, 720, 774
NlaIII CATG 3 cut(s) 130, 715, 796
NlaIV GGNNCC 3 cut(s) 347, 636, 847
NspI RCATGY 1 cut(s) 715
PciI ACATGT 1 cut(s) 711
PcsI WCGNNNNNNNCGW 5 cut(s) 186, 638, 699, 705, 770
PfeI GAWTC 3 cut(s) 581, 629, 1012
PfoI TCCNGGA 2 cut(s) 716, 777
PkrI GCNGC 7 cut(s) 474, 648, 677, 919, 922, 951, 954
PleI GAGTC 3 cut(s) 116, 176, 409
PpsI GAGTC 3 cut(s) 116, 176, 409
PpuMI RGGWCCY 1 cut(s) 781
PscI ACATGT 1 cut(s) 711
Psp5II RGGWCCY 1 cut(s) 781
Psp6I CCWGG 1 cut(s) 777
PspFI CCCAGC 1 cut(s) 882
PspGI CCWGG 1 cut(s) 777
PspN4I GGNNCC 3 cut(s) 347, 636, 847
PspPI GGNCC 3 cut(s) 766, 781, 846
PspPPI RGGWCCY 1 cut(s) 781
PstNI CAGNNNCTG 1 cut(s) 784
PsuI RGATCY 3 cut(s) 283, 444, 651
PvuII CAGCTG 1 cut(s) 991
RsaI GTAC 3 cut(s) 398, 698, 873
RsaNI GTAC 3 cut(s) 397, 697, 872
RseI CAYNNNNRTG 1 cut(s) 797
Rsr2I CGGWCCG 1 cut(s) 766
RsrII CGGWCCG 1 cut(s) 766
SacII CCGCGG 1 cut(s) 956
SalI GTCGAC 1 cut(s) 640
SatI GCNGC 7 cut(s) 473, 647, 676, 918, 921, 950, 953
Sau3AI GATC 7 cut(s) 283, 438, 444, 624, 651, 720, 774
Sau96I GGNCC 3 cut(s) 766, 781, 846
SchI GAGTC 3 cut(s) 116, 176, 410
ScrFI CCNGG 4 cut(s) 468, 614, 718, 779
SfaNI GCATC 1 cut(s) 955
Sfr303I CCGCGG 1 cut(s) 956
SgrBI CCGCGG 1 cut(s) 956
SgrDI CGTCGACG 1 cut(s) 640
SinI GGWCC 2 cut(s) 766, 781
SmiMI CAYNNNNRTG 1 cut(s) 797
Sse9I AATT 1 cut(s) 568
StyD4I CCNGG 4 cut(s) 466, 612, 716, 777
StyI CCWWGG 2 cut(s) 126, 849
TaaI ACNGT 2 cut(s) 770, 1036
TaiI ACGT 5 cut(s) 548, 561, 801, 948, 1023
TaqI TCGA 8 cut(s) 219, 420, 437, 566, 627, 641, 693, 1015
TasI AATT 1 cut(s) 568
TauI GCSGC 5 cut(s) 649, 920, 923, 952, 955
TfiI GAWTC 3 cut(s) 581, 629, 1012
TseI GCWGC 2 cut(s) 472, 675
TspDTI ATGAA 3 cut(s) 139, 781, 962
TspGWI ACGGA 1 cut(s) 779
VpaK11BI GGWCC 2 cut(s) 766, 781
XceI RCATGY 1 cut(s) 715
XmiI GTMKAC 1 cut(s) 641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.