Rroxscaffold_4G00288410

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0015693
Physical Location & Seq
Reverse (-)
9236790 .. 9237832
1043 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00288410.1

Sequence Viewer

Length: 990 bp
ATGTCCACCACCACCACCTCCATTTTCCTCTTCCTCTTCTCCCTCCTCCTCACCACCCACTCCAAACCCATCCGCCACCTCACCTCCCCCTACCTCTCCCCCACCACCATCTCCGCCAACTACGACTCCATGGTCAAGAACTTCAAAATCTTCATCTACAAGACAAATCCTCACTTCACCTTCGACTCCCCCGTCCAGTCTCTCTTCTACACCACCCTCCTCGACAGCGACCTCGCCACCAACAACACCGACGAAGCCCACCTCTTCTTCCTCCCCTTCCCGCCAGATCTCCCCACGCGCTCCATCGCGCGTCTCATCCGAACCATCCGCACCGACCTCCCTTACTGGAACCGCACCCTCGGAGCTGACCACTTCTACCTCTCCTGCTCCGGCGTCGGGTACGAGTCCGACCGGAACCTCGTCGAGCTGAAGAAGAACTCGATCCAGATCTCCTGCTTCCCGACCCCGCCGGGGCAGCTCATCCCTCACAAGGACATCACTCTCCCCCGCTCGTTGAATTGGGTGAATGATTCCGCCATAGTCAACGAGTTACGCGCCAACCCGGAGTTCCTGATCGAATCGGAGCAGTCGACGCCGCAGATCTATGCACAGAGGCTCTCCAGCAGCAAGTTCTGTATCTTCGAGTACGGCGACGGCGACGTGTCCGGGATCGGAGAGGCTCTGCGGTTCGGGTGCGTCCCCGTGGTGATTACGGACCGTCCGATCCAGGACCTGCCGTTCATGGACGTGCTGAGGTGGCAGGAGATGGCGCTGTTCGTGGGGAGGAGAGGTGGGGCCAAGGAGTTAGAGCGCGTGTTGGTACGCGCGTGCTGGGAGAGGCACGACCAGATGAGGCGGTTGGGTACGGCGGCGGGTCAGCATTTGGTGTGGAACGTGCCGCCGCGGGCTTTGGATGCGTTTCATACTTTGGTTTATCAGCTGTGGTTGCGACGCCACACGATTCGATATGTCCGGCGGGAGACGGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

329

Amino Acids

37.8

Weight (kDa)

8.56

Isoelectric Point (pI)

53.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 46 - 169 8.9e-13 Exostosin GT47 domain
Exostosin_GT47 PF03016 182 - 261 7.6e-13 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015693)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g23460
malus_domestica MD01G1140500.v1.1 MD07G1204800.v1.1
prunus_persica Prupe.2G241000_v2.0.a1
pyrus_communis pycom07g19130
rosa_chinensis RchiOBHm_Chr1g0368611
rosa_laevigata RLG00000020781 RLG00000027201
rosa_multiflora Rmu_sc0001791.1_g000003 Rmu_sc0011394.1_g000003
rosa_roxburghii Rroxscaffold_4G00288410
rosa_rugosa Rorug01G0343100
rosa_samantha Rh1AG350400 Rh1BG313700 Rh1CG328300 Rh1DG345100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 131, 191
Acc36I ACCTGC 1 cut(s) 741
AccBSI CCGCTC 1 cut(s) 510
AccI GTMKAC 1 cut(s) 590
AccII CGCG 8 cut(s) 298, 308, 310, 555, 813, 825, 827, 904
AclWI GGATC 3 cut(s) 436, 677, 718
AcuI CTGAAG 1 cut(s) 449
AcyI GRCGYC 3 cut(s) 393, 593, 952
AfaI GTAC 4 cut(s) 401, 647, 822, 865
AfiI CCNNNNNNNGG 3 cut(s) 396, 471, 490
AflIII ACRYGT 1 cut(s) 660
AgsI TTSAA 2 cut(s) 145, 517
AjiI CACGTC 2 cut(s) 661, 748
AjnI CCWGG 1 cut(s) 726
AjuI GAANNNNNNNTTGG 2 cut(s) 551, 583
AloI GAACNNNNNNTCC 2 cut(s) 722, 754
AluBI AGCT 4 cut(s) 365, 427, 478, 940
AluI AGCT 4 cut(s) 365, 427, 478, 940
Alw26I GTCTC 3 cut(s) 204, 317, 974
AlwI GGATC 3 cut(s) 436, 677, 718
AlwNI CAGNNNCTG 1 cut(s) 733
AoxI GGCC 1 cut(s) 795
ApeKI GCWGC 2 cut(s) 475, 624
AspLEI GCGC 6 cut(s) 300, 310, 557, 772, 813, 827
AspS9I GGNCC 3 cut(s) 715, 730, 795
AsuC2I CCSGG 3 cut(s) 471, 563, 667
AsuHPI GGTGA 5 cut(s) 43, 73, 169, 535, 718
AvaII GGWCC 2 cut(s) 715, 730
BaeI ACNNNNGTAYC 2 cut(s) 812, 845
BbvCI CCTCAGC 1 cut(s) 752
BbvI GCAGC 2 cut(s) 487, 636
BccI CCATC 5 cut(s) 77, 116, 311, 332, 760
BceAI ACGGC 4 cut(s) 664, 670, 721, 882
BciT130I CCWGG 1 cut(s) 728
BcnI CCSGG 3 cut(s) 471, 563, 667
BcoDI GTCTC 3 cut(s) 204, 317, 974
BfoI RGCGCY 1 cut(s) 773
BfuAI ACCTGC 1 cut(s) 741
BglII AGATCT 3 cut(s) 286, 447, 600
BisI GCNGC 6 cut(s) 476, 596, 625, 870, 899, 902
BlsI GCNGC 6 cut(s) 477, 597, 626, 871, 900, 903
Bme1390I CCNGG 4 cut(s) 471, 563, 667, 728
Bme18I GGWCC 2 cut(s) 715, 730
BmgBI CACGTC 2 cut(s) 661, 748
BmgT120I GGNCC 3 cut(s) 715, 730, 795
BmiI GGNNCC 3 cut(s) 350, 416, 796
BmrFI CCNGG 4 cut(s) 471, 563, 667, 728
BmsI GCATC 1 cut(s) 904
BpmI CTGGAG 1 cut(s) 604
Bpu10I CCTNAGC 1 cut(s) 752
BpuMI CCSGG 3 cut(s) 471, 563, 667
BsaBI GATNNNNATC 1 cut(s) 446
BsaHI GRCGYC 3 cut(s) 393, 593, 952
BsaJI CCNNGG 6 cut(s) 129, 358, 470, 702, 798, 902
BsaWI WCCGGW 1 cut(s) 411
BsaXI ACNNNNNCTCC 7 cut(s) 68, 98, 110, 140, 775, 805, 971
Bsc4I CCNNNNNNNGG 3 cut(s) 396, 471, 490
Bse1I ACTGG 2 cut(s) 196, 350
Bse8I GATNNNNATC 1 cut(s) 446
BseBI CCWGG 1 cut(s) 728
BseDI CCNNGG 6 cut(s) 129, 358, 470, 702, 798, 902
BseGI GGATG 5 cut(s) 69, 315, 324, 480, 919
BseJI GATNNNNATC 1 cut(s) 446
BseLI CCNNNNNNNGG 3 cut(s) 396, 471, 490
BseMII CTCAG 1 cut(s) 743
BseNI ACTGG 2 cut(s) 196, 350
BseRI GAGGAG 4 cut(s) 35, 38, 209, 799
BseXI GCAGC 2 cut(s) 487, 636
BseYI CCCAGC 1 cut(s) 831
Bsh1236I CGCG 8 cut(s) 298, 308, 310, 555, 813, 825, 827, 904
Bsh1285I CGRYCG 1 cut(s) 412
BshFI GGCC 1 cut(s) 797
BsiEI CGRYCG 1 cut(s) 412
BsiSI CCGG 6 cut(s) 390, 412, 470, 563, 666, 973
BslFI GGGAC 1 cut(s) 683
BslI CCNNNNNNNGG 3 cut(s) 396, 471, 490
BsmAI GTCTC 3 cut(s) 204, 317, 974
BsmBI CGTCTC 2 cut(s) 317, 974
BsmFI GGGAC 1 cut(s) 683
BsnI GGCC 1 cut(s) 797
Bsp143I GATC 7 cut(s) 286, 441, 447, 573, 600, 669, 723
Bsp19I CCATGG 1 cut(s) 129
BspANI GGCC 1 cut(s) 797
BspCNI CTCAG 1 cut(s) 744
BspFNI CGCG 8 cut(s) 298, 308, 310, 555, 813, 825, 827, 904
BspLI GGNNCC 3 cut(s) 350, 416, 796
BspMI ACCTGC 1 cut(s) 741
BspPI GGATC 3 cut(s) 436, 677, 718
BsrBI CCGCTC 1 cut(s) 510
BsrI ACTGG 2 cut(s) 196, 350
BssECI CCNNGG 6 cut(s) 129, 358, 470, 702, 798, 902
BssMI GATC 7 cut(s) 286, 441, 447, 573, 600, 669, 723
BssNI GRCGYC 3 cut(s) 393, 593, 952
BssT1I CCWWGG 2 cut(s) 129, 798
Bst2UI CCWGG 1 cut(s) 728
Bst4CI ACNGT 1 cut(s) 719
Bst6I CTCTTC 4 cut(s) 35, 41, 209, 269
BstACI GRCGYC 3 cut(s) 393, 593, 952
BstC8I GCNNGC 2 cut(s) 829, 906
BstDEI CTNAG 1 cut(s) 752
BstDSI CCRYGG 3 cut(s) 129, 702, 902
BstF5I GGATG 5 cut(s) 69, 315, 324, 480, 919
BstFNI CGCG 8 cut(s) 298, 308, 310, 555, 813, 825, 827, 904
BstH2I RGCGCY 1 cut(s) 773
BstHHI GCGC 6 cut(s) 300, 310, 557, 772, 813, 827
BstKTI GATC 7 cut(s) 289, 444, 450, 576, 603, 672, 726
BstMAI GTCTC 3 cut(s) 204, 317, 974
BstMBI GATC 7 cut(s) 286, 441, 447, 573, 600, 669, 723
BstMCI CGRYCG 1 cut(s) 412
BstMWI GCNNNNNNNGC 5 cut(s) 475, 592, 757, 914, 946
BstNI CCWGG 1 cut(s) 728
BstSCI CCNGG 4 cut(s) 469, 561, 665, 726
BstUI CGCG 8 cut(s) 298, 308, 310, 555, 813, 825, 827, 904
BstV1I GCAGC 2 cut(s) 487, 636
BstX2I RGATCY 3 cut(s) 286, 447, 600
BstYI RGATCY 3 cut(s) 286, 447, 600
BsuRI GGCC 1 cut(s) 797
BtgI CCRYGG 3 cut(s) 129, 702, 902
BtgZI GCGATG 1 cut(s) 289
BtrI CACGTC 2 cut(s) 661, 748
BtsCI GGATG 5 cut(s) 69, 315, 324, 480, 919
BveI ACCTGC 1 cut(s) 741
Cac8I GCNNGC 2 cut(s) 829, 906
CaiI CAGNNNCTG 1 cut(s) 733
CfoI GCGC 6 cut(s) 300, 310, 557, 772, 813, 827
Cfr13I GGNCC 3 cut(s) 715, 730, 795
Cfr42I CCGCGG 1 cut(s) 905
CpoI CGGWCCG 1 cut(s) 715
CseI GACGC 5 cut(s) 299, 382, 601, 685, 960
Csp6I GTAC 4 cut(s) 400, 646, 821, 864
CspI CGGWCCG 1 cut(s) 715
CviAII CATG 2 cut(s) 130, 742
CviJI RGCY 9 cut(s) 257, 365, 427, 478, 616, 680, 797, 908, 940
CviKI_1 RGCY 9 cut(s) 257, 365, 427, 478, 616, 680, 797, 908, 940
CviQI GTAC 4 cut(s) 400, 646, 821, 864
DdeI CTNAG 1 cut(s) 752
DpnI GATC 7 cut(s) 288, 443, 449, 575, 602, 671, 725
DpnII GATC 7 cut(s) 286, 441, 447, 573, 600, 669, 723
DrdI GACNNNNNNGTC 2 cut(s) 131, 191
DseDI GACNNNNNNGTC 2 cut(s) 131, 191
Eam1104I CTCTTC 4 cut(s) 35, 41, 209, 269
EarI CTCTTC 4 cut(s) 35, 41, 209, 269
EciI GGCGGA 3 cut(s) 62, 103, 523
Eco130I CCWWGG 2 cut(s) 129, 798
Eco47I GGWCC 2 cut(s) 715, 730
Eco57I CTGAAG 1 cut(s) 449
EcoO109I RGGNCCY 1 cut(s) 730
EcoRII CCWGG 1 cut(s) 726
EcoT14I CCWWGG 2 cut(s) 129, 798
ErhI CCWWGG 2 cut(s) 129, 798
Esp3I CGTCTC 2 cut(s) 317, 974
FaeI CATG 2 cut(s) 133, 745
FaiI YATR 6 cut(s) 131, 539, 606, 743, 924, 969
FaqI GGGAC 1 cut(s) 683
FatI CATG 2 cut(s) 129, 741
FauI CCCGC 6 cut(s) 288, 474, 515, 865, 897, 969
FblI GTMKAC 1 cut(s) 590
Fnu4HI GCNGC 6 cut(s) 476, 596, 625, 870, 899, 902
FokI GGATG 5 cut(s) 56, 302, 311, 467, 926
Fsp4HI GCNGC 6 cut(s) 476, 596, 625, 870, 899, 902
GlaI GCGC 6 cut(s) 299, 309, 556, 771, 812, 826
GluI GCNGC 6 cut(s) 476, 596, 625, 870, 899, 902
GsaI CCCAGC 1 cut(s) 835
GsuI CTGGAG 1 cut(s) 604
HaeII RGCGCY 1 cut(s) 773
HaeIII GGCC 1 cut(s) 797
HapII CCGG 6 cut(s) 390, 412, 470, 563, 666, 973
HgaI GACGC 5 cut(s) 299, 382, 601, 685, 960
HhaI GCGC 6 cut(s) 300, 310, 557, 772, 813, 827
Hin1I GRCGYC 3 cut(s) 393, 593, 952
Hin1II CATG 2 cut(s) 133, 745
Hin6I GCGC 6 cut(s) 298, 308, 555, 770, 811, 825
HinP1I GCGC 6 cut(s) 298, 308, 555, 770, 811, 825
HincII GTYRAC 2 cut(s) 544, 591
HindII GTYRAC 2 cut(s) 544, 591
HinfI GANTC 6 cut(s) 125, 185, 404, 530, 578, 961
HpaII CCGG 6 cut(s) 390, 412, 470, 563, 666, 973
HphI GGTGA 5 cut(s) 43, 73, 169, 535, 718
Hpy166II GTNNAC 3 cut(s) 6, 544, 591
Hpy188I TCNGA 6 cut(s) 320, 362, 409, 583, 674, 723
Hpy188III TCNNGA 4 cut(s) 136, 445, 460, 571
Hpy8I GTNNAC 3 cut(s) 6, 544, 591
Hpy99I CGWCG 7 cut(s) 254, 398, 425, 595, 656, 662, 954
HpyAV CCTTC 2 cut(s) 190, 286
HpyCH4III ACNGT 1 cut(s) 719
HpyCH4IV ACGT 3 cut(s) 660, 747, 894
HpyCH4V TGCA 1 cut(s) 608
HpyF10VI GCNNNNNNNGC 5 cut(s) 475, 592, 757, 914, 946
HpyF3I CTNAG 1 cut(s) 752
HpySE526I ACGT 3 cut(s) 660, 747, 894
Hsp92I GRCGYC 3 cut(s) 393, 593, 952
Hsp92II CATG 2 cut(s) 133, 745
HspAI GCGC 6 cut(s) 298, 308, 555, 770, 811, 825
KspI CCGCGG 1 cut(s) 905
Kzo9I GATC 7 cut(s) 286, 441, 447, 573, 600, 669, 723
LmnI GCTCC 4 cut(s) 305, 362, 392, 583
Lsp1109I GCAGC 2 cut(s) 487, 636
LweI GCATC 1 cut(s) 904
MaeII ACGT 3 cut(s) 660, 747, 894
MaeIII GTNAC 1 cut(s) 549
MalI GATC 7 cut(s) 288, 443, 449, 575, 602, 671, 725
MbiI CCGCTC 1 cut(s) 510
MboI GATC 7 cut(s) 286, 441, 447, 573, 600, 669, 723
MboII GAAGA 9 cut(s) 22, 28, 142, 196, 256, 259, 442, 445, 631
MflI RGATCY 3 cut(s) 286, 447, 600
MluCI AATT 1 cut(s) 517
MlyI GAGTC 3 cut(s) 119, 179, 413
MmeI TCCRAC 1 cut(s) 432
MslI CAYNNNNRTG 1 cut(s) 746
MspA1I CMGCKG 2 cut(s) 904, 940
MspI CCGG 6 cut(s) 390, 412, 470, 563, 666, 973
MspR9I CCNGG 4 cut(s) 471, 563, 667, 728
MvaI CCWGG 1 cut(s) 728
MvnI CGCG 8 cut(s) 298, 308, 310, 555, 813, 825, 827, 904
MwoI GCNNNNNNNGC 5 cut(s) 475, 592, 757, 914, 946
NciI CCSGG 3 cut(s) 471, 563, 667
NcoI CCATGG 1 cut(s) 129
NdeII GATC 7 cut(s) 286, 441, 447, 573, 600, 669, 723
NlaIII CATG 2 cut(s) 133, 745
NlaIV GGNNCC 3 cut(s) 350, 416, 796
PcsI WCGNNNNNNNCGW 5 cut(s) 189, 587, 648, 654, 719
PfeI GAWTC 3 cut(s) 530, 578, 961
PfoI TCCNGGA 2 cut(s) 665, 726
PkrI GCNGC 6 cut(s) 477, 597, 626, 871, 900, 903
PleI GAGTC 3 cut(s) 119, 179, 412
PpsI GAGTC 3 cut(s) 119, 179, 412
PpuMI RGGWCCY 1 cut(s) 730
Psp5II RGGWCCY 1 cut(s) 730
Psp6I CCWGG 1 cut(s) 726
PspFI CCCAGC 1 cut(s) 831
PspGI CCWGG 1 cut(s) 726
PspN4I GGNNCC 3 cut(s) 350, 416, 796
PspPI GGNCC 3 cut(s) 715, 730, 795
PspPPI RGGWCCY 1 cut(s) 730
PstNI CAGNNNCTG 1 cut(s) 733
PsuI RGATCY 3 cut(s) 286, 447, 600
PvuII CAGCTG 1 cut(s) 940
RsaI GTAC 4 cut(s) 401, 647, 822, 865
RsaNI GTAC 4 cut(s) 400, 646, 821, 864
RseI CAYNNNNRTG 1 cut(s) 746
Rsr2I CGGWCCG 1 cut(s) 715
RsrII CGGWCCG 1 cut(s) 715
SacII CCGCGG 1 cut(s) 905
SalI GTCGAC 1 cut(s) 589
SatI GCNGC 6 cut(s) 476, 596, 625, 870, 899, 902
Sau3AI GATC 7 cut(s) 286, 441, 447, 573, 600, 669, 723
Sau96I GGNCC 3 cut(s) 715, 730, 795
SchI GAGTC 3 cut(s) 119, 179, 413
ScrFI CCNGG 4 cut(s) 471, 563, 667, 728
SfaNI GCATC 1 cut(s) 904
Sfr303I CCGCGG 1 cut(s) 905
SgrBI CCGCGG 1 cut(s) 905
SinI GGWCC 2 cut(s) 715, 730
SmiMI CAYNNNNRTG 1 cut(s) 746
Sse9I AATT 1 cut(s) 517
StyD4I CCNGG 4 cut(s) 469, 561, 665, 726
StyI CCWWGG 2 cut(s) 129, 798
TaaI ACNGT 1 cut(s) 719
TaiI ACGT 3 cut(s) 663, 750, 897
TaqI TCGA 8 cut(s) 183, 222, 423, 440, 576, 590, 642, 964
TasI AATT 1 cut(s) 517
TauI GCSGC 4 cut(s) 598, 872, 901, 904
TfiI GAWTC 3 cut(s) 530, 578, 961
TseI GCWGC 2 cut(s) 475, 624
TspDTI ATGAA 3 cut(s) 142, 730, 911
TspGWI ACGGA 1 cut(s) 728
VpaK11BI GGWCC 2 cut(s) 715, 730
XmiI GTMKAC 1 cut(s) 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.