Rmu_sc0001791.1_g000003

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001791.1
OG0015693
Physical Location & Seq
Forward (+)
10930 .. 11976
1047 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001791.1_g000003.1.cds

Sequence Viewer

Length: 1047 bp
atgtccaccaccaccgccacctccattttcctcttcctcttctccctcctcctcaccacccactccaaacccatcccccacctcacctccccctacctctcccccgccaccatctccgccaactacgactccatggtcaagaacttcaaaatcttcatctacaagccaaatcctcacttcacttacgactcccccgtccagtctctcttctacaccgccctcctcgacagcgacctcgccaccaacaacaccgacgaagcccacctcttcttcctccccttcccgccagatctccccacgcgctccatcgcgcgtctcatccgcaccatccgcaccgacctcccttactggaaccgcaccctcggagctgaccacttctacctctcctgctccggcgtcgggtacgagtccgaccgcaacctcgtcgagctgaagaagaactcgatccagatctcctgcttcccgaccccgccggggcagctcatccctcacaaggacatcactctccccccgctcgcgtccccccacgcgccgaccagcaacacgacgacggttctgggctacgtcaggtcgaattgggtgaatgattccgccatagtcaacgggttacgctccaacccggagttcctgatcgaatcggagccgtcgacgccgcagatctatgcacagaggctctccagcagcaagttctgtatcttcgagtacggcgacggcgacatgtccgggatcggagaggctctgcggttcgggtgcgtccccgtggtgattacggaccgtccgatccaggacctgccgttcatggacgtgctgaggtggcaggagatggcgctgttcgtggggaggagaggtggggccaaggagttggagcgcgtgttggtacgcgcgtgctgggagaggcacgaccagatgaggcggttgggtgcggcggcgggtcagcatttggtgtggaacgtgccgccgcgggctttggatgcgtttcatactttggtttatcagctgtggttgcgacgccacacgattcgatacgtccggcgggagacggcgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

348

Amino Acids

39.47

Weight (kDa)

8.55

Isoelectric Point (pI)

54.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015693)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g23460
malus_domestica MD01G1140500.v1.1 MD07G1204800.v1.1
prunus_persica Prupe.2G241000_v2.0.a1
pyrus_communis pycom07g19130
rosa_chinensis RchiOBHm_Chr1g0368611
rosa_laevigata RLG00000020781 RLG00000027201
rosa_multiflora Rmu_sc0001791.1_g000003 Rmu_sc0011394.1_g000003
rosa_roxburghii Rroxscaffold_4G00288410
rosa_rugosa Rorug01G0343100
rosa_samantha Rh1AG350400 Rh1BG313700 Rh1CG328300 Rh1DG345100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 134, 194
Acc36I ACCTGC 1 cut(s) 798
AccBSI CCGCTC 1 cut(s) 514
AccI GTMKAC 1 cut(s) 647
AccII CGCG 9 cut(s) 301, 311, 313, 518, 530, 870, 882, 884, 961
AclWI GGATC 3 cut(s) 439, 734, 775
AcuI CTGAAG 1 cut(s) 452
AcyI GRCGYC 3 cut(s) 396, 650, 1009
AfaI GTAC 3 cut(s) 404, 704, 879
AfiI CCNNNNNNNGG 3 cut(s) 399, 474, 493
AflIII ACRYGT 1 cut(s) 717
AgsI TTSAA 1 cut(s) 148
AjiI CACGTC 1 cut(s) 805
AjnI CCWGG 1 cut(s) 783
AjuI GAANNNNNNNTTGG 2 cut(s) 608, 640
AloI GAACNNNNNNTCC 2 cut(s) 779, 811
AluBI AGCT 4 cut(s) 368, 430, 481, 997
AluI AGCT 4 cut(s) 368, 430, 481, 997
Alw26I GTCTC 3 cut(s) 207, 320, 1031
AlwI GGATC 3 cut(s) 439, 734, 775
AlwNI CAGNNNCTG 1 cut(s) 790
AoxI GGCC 1 cut(s) 852
ApeKI GCWGC 2 cut(s) 478, 681
AspLEI GCGC 6 cut(s) 303, 313, 532, 829, 870, 884
AspS9I GGNCC 3 cut(s) 772, 787, 852
AsuC2I CCSGG 3 cut(s) 474, 620, 724
AsuHPI GGTGA 4 cut(s) 46, 76, 592, 775
AvaII GGWCC 2 cut(s) 772, 787
BaeI ACNNNNGTAYC 2 cut(s) 869, 902
BbvCI CCTCAGC 1 cut(s) 809
BbvI GCAGC 2 cut(s) 490, 693
BccI CCATC 5 cut(s) 80, 119, 314, 335, 817
BceAI ACGGC 4 cut(s) 628, 721, 727, 778
BcgI CGANNNNNNTGC 2 cut(s) 406, 440
BciT130I CCWGG 1 cut(s) 785
BcnI CCSGG 3 cut(s) 474, 620, 724
BcoDI GTCTC 3 cut(s) 207, 320, 1031
BfoI RGCGCY 1 cut(s) 830
BfuAI ACCTGC 1 cut(s) 798
BglII AGATCT 3 cut(s) 289, 450, 657
BisI GCNGC 7 cut(s) 479, 653, 682, 924, 927, 956, 959
BlsI GCNGC 7 cut(s) 480, 654, 683, 925, 928, 957, 960
Bme1390I CCNGG 4 cut(s) 474, 620, 724, 785
Bme18I GGWCC 2 cut(s) 772, 787
BmgBI CACGTC 1 cut(s) 805
BmgT120I GGNCC 3 cut(s) 772, 787, 852
BmiI GGNNCC 3 cut(s) 353, 642, 853
BmrFI CCNGG 4 cut(s) 474, 620, 724, 785
BmsI GCATC 1 cut(s) 961
BpmI CTGGAG 1 cut(s) 661
Bpu10I CCTNAGC 1 cut(s) 809
BpuMI CCSGG 3 cut(s) 474, 620, 724
BsaBI GATNNNNATC 1 cut(s) 449
BsaHI GRCGYC 3 cut(s) 396, 650, 1009
BsaJI CCNNGG 6 cut(s) 132, 361, 473, 759, 855, 959
BsaXI ACNNNNNCTCC 9 cut(s) 71, 101, 113, 143, 832, 857, 862, 887, 1028
Bsc4I CCNNNNNNNGG 3 cut(s) 399, 474, 493
Bse1I ACTGG 2 cut(s) 199, 353
Bse8I GATNNNNATC 1 cut(s) 449
BseBI CCWGG 1 cut(s) 785
BseDI CCNNGG 6 cut(s) 132, 361, 473, 759, 855, 959
BseGI GGATG 5 cut(s) 72, 318, 327, 483, 976
BseJI GATNNNNATC 1 cut(s) 449
BseLI CCNNNNNNNGG 3 cut(s) 399, 474, 493
BseMII CTCAG 1 cut(s) 800
BseNI ACTGG 2 cut(s) 199, 353
BseRI GAGGAG 4 cut(s) 38, 41, 212, 856
BseXI GCAGC 2 cut(s) 490, 693
BseYI CCCAGC 1 cut(s) 888
Bsh1236I CGCG 9 cut(s) 301, 311, 313, 518, 530, 870, 882, 884, 961
Bsh1285I CGRYCG 1 cut(s) 415
BshFI GGCC 1 cut(s) 854
BsiEI CGRYCG 1 cut(s) 415
BsiSI CCGG 5 cut(s) 393, 473, 620, 723, 1030
BslFI GGGAC 2 cut(s) 505, 740
BslI CCNNNNNNNGG 3 cut(s) 399, 474, 493
BsmAI GTCTC 3 cut(s) 207, 320, 1031
BsmBI CGTCTC 2 cut(s) 320, 1031
BsmFI GGGAC 2 cut(s) 505, 740
BsnI GGCC 1 cut(s) 854
Bsp143I GATC 7 cut(s) 289, 444, 450, 630, 657, 726, 780
Bsp19I CCATGG 1 cut(s) 132
BspANI GGCC 1 cut(s) 854
BspCNI CTCAG 1 cut(s) 801
BspFNI CGCG 9 cut(s) 301, 311, 313, 518, 530, 870, 882, 884, 961
BspLI GGNNCC 3 cut(s) 353, 642, 853
BspMI ACCTGC 1 cut(s) 798
BspPI GGATC 3 cut(s) 439, 734, 775
BsrBI CCGCTC 1 cut(s) 514
BsrI ACTGG 2 cut(s) 199, 353
BssECI CCNNGG 6 cut(s) 132, 361, 473, 759, 855, 959
BssMI GATC 7 cut(s) 289, 444, 450, 630, 657, 726, 780
BssNI GRCGYC 3 cut(s) 396, 650, 1009
BssT1I CCWWGG 2 cut(s) 132, 855
Bst2UI CCWGG 1 cut(s) 785
Bst4CI ACNGT 2 cut(s) 553, 776
Bst6I CTCTTC 4 cut(s) 38, 44, 212, 272
BstACI GRCGYC 3 cut(s) 396, 650, 1009
BstC8I GCNNGC 3 cut(s) 516, 886, 963
BstDEI CTNAG 1 cut(s) 809
BstDSI CCRYGG 3 cut(s) 132, 759, 959
BstF5I GGATG 5 cut(s) 72, 318, 327, 483, 976
BstFNI CGCG 9 cut(s) 301, 311, 313, 518, 530, 870, 882, 884, 961
BstH2I RGCGCY 1 cut(s) 830
BstHHI GCGC 6 cut(s) 303, 313, 532, 829, 870, 884
BstKTI GATC 7 cut(s) 292, 447, 453, 633, 660, 729, 783
BstMAI GTCTC 3 cut(s) 207, 320, 1031
BstMBI GATC 7 cut(s) 289, 444, 450, 630, 657, 726, 780
BstMCI CGRYCG 1 cut(s) 415
BstMWI GCNNNNNNNGC 6 cut(s) 330, 478, 649, 814, 971, 1003
BstNI CCWGG 1 cut(s) 785
BstNSI RCATGY 1 cut(s) 721
BstSCI CCNGG 4 cut(s) 472, 618, 722, 783
BstUI CGCG 9 cut(s) 301, 311, 313, 518, 530, 870, 882, 884, 961
BstV1I GCAGC 2 cut(s) 490, 693
BstX2I RGATCY 3 cut(s) 289, 450, 657
BstXI CCANNNNNNTGG 1 cut(s) 862
BstYI RGATCY 3 cut(s) 289, 450, 657
BsuRI GGCC 1 cut(s) 854
BtgI CCRYGG 3 cut(s) 132, 759, 959
BtgZI GCGATG 1 cut(s) 292
BtrI CACGTC 1 cut(s) 805
BtsCI GGATG 5 cut(s) 72, 318, 327, 483, 976
BveI ACCTGC 1 cut(s) 798
Cac8I GCNNGC 3 cut(s) 516, 886, 963
CaiI CAGNNNCTG 1 cut(s) 790
CfoI GCGC 6 cut(s) 303, 313, 532, 829, 870, 884
Cfr13I GGNCC 3 cut(s) 772, 787, 852
Cfr42I CCGCGG 1 cut(s) 962
CpoI CGGWCCG 1 cut(s) 772
CseI GACGC 6 cut(s) 302, 385, 507, 658, 742, 1017
Csp6I GTAC 3 cut(s) 403, 703, 878
CspI CGGWCCG 1 cut(s) 772
CviAII CATG 3 cut(s) 133, 718, 799
CviQI GTAC 3 cut(s) 403, 703, 878
DdeI CTNAG 1 cut(s) 809
DpnI GATC 7 cut(s) 291, 446, 452, 632, 659, 728, 782
DpnII GATC 7 cut(s) 289, 444, 450, 630, 657, 726, 780
DrdI GACNNNNNNGTC 2 cut(s) 134, 194
DseDI GACNNNNNNGTC 2 cut(s) 134, 194
Eam1104I CTCTTC 4 cut(s) 38, 44, 212, 272
EarI CTCTTC 4 cut(s) 38, 44, 212, 272
EciI GGCGGA 2 cut(s) 106, 580
Eco130I CCWWGG 2 cut(s) 132, 855
Eco47I GGWCC 2 cut(s) 772, 787
Eco57I CTGAAG 1 cut(s) 452
EcoO109I RGGNCCY 1 cut(s) 787
EcoRII CCWGG 1 cut(s) 783
EcoT14I CCWWGG 2 cut(s) 132, 855
ErhI CCWWGG 2 cut(s) 132, 855
Esp3I CGTCTC 2 cut(s) 320, 1031
FaeI CATG 3 cut(s) 136, 721, 802
FaiI YATR 6 cut(s) 134, 596, 663, 719, 800, 981
FaqI GGGAC 2 cut(s) 505, 740
FatI CATG 3 cut(s) 132, 717, 798
FauI CCCGC 7 cut(s) 112, 291, 477, 519, 922, 954, 1026
FblI GTMKAC 1 cut(s) 647
Fnu4HI GCNGC 7 cut(s) 479, 653, 682, 924, 927, 956, 959
FokI GGATG 5 cut(s) 59, 305, 314, 470, 983
Fsp4HI GCNGC 7 cut(s) 479, 653, 682, 924, 927, 956, 959
GlaI GCGC 6 cut(s) 302, 312, 531, 828, 869, 883
GluI GCNGC 7 cut(s) 479, 653, 682, 924, 927, 956, 959
GsaI CCCAGC 1 cut(s) 892
GsuI CTGGAG 1 cut(s) 661
HaeII RGCGCY 1 cut(s) 830
HaeIII GGCC 1 cut(s) 854
HapII CCGG 5 cut(s) 393, 473, 620, 723, 1030
HgaI GACGC 6 cut(s) 302, 385, 507, 658, 742, 1017
HhaI GCGC 6 cut(s) 303, 313, 532, 829, 870, 884
Hin1I GRCGYC 3 cut(s) 396, 650, 1009
Hin1II CATG 3 cut(s) 136, 721, 802
Hin6I GCGC 6 cut(s) 301, 311, 530, 827, 868, 882
HinP1I GCGC 6 cut(s) 301, 311, 530, 827, 868, 882
HincII GTYRAC 2 cut(s) 601, 648
HindII GTYRAC 2 cut(s) 601, 648
HinfI GANTC 6 cut(s) 128, 188, 407, 587, 635, 1018
HpaII CCGG 5 cut(s) 393, 473, 620, 723, 1030
HphI GGTGA 4 cut(s) 46, 76, 592, 775
Hpy166II GTNNAC 3 cut(s) 6, 601, 648
Hpy188I TCNGA 5 cut(s) 365, 412, 640, 731, 780
Hpy188III TCNNGA 4 cut(s) 139, 448, 463, 628
Hpy8I GTNNAC 3 cut(s) 6, 601, 648
Hpy99I CGWCG 9 cut(s) 257, 401, 428, 550, 553, 649, 652, 713, 1011
HpyAV CCTTC 1 cut(s) 289
HpyCH4III ACNGT 2 cut(s) 553, 776
HpyCH4IV ACGT 4 cut(s) 564, 804, 951, 1026
HpyCH4V TGCA 1 cut(s) 665
HpyF10VI GCNNNNNNNGC 6 cut(s) 330, 478, 649, 814, 971, 1003
HpyF3I CTNAG 1 cut(s) 809
HpySE526I ACGT 4 cut(s) 564, 804, 951, 1026
Hsp92I GRCGYC 3 cut(s) 396, 650, 1009
Hsp92II CATG 3 cut(s) 136, 721, 802
HspAI GCGC 6 cut(s) 301, 311, 530, 827, 868, 882
KspI CCGCGG 1 cut(s) 962
Kzo9I GATC 7 cut(s) 289, 444, 450, 630, 657, 726, 780
LmnI GCTCC 6 cut(s) 308, 365, 395, 617, 640, 865
Lsp1109I GCAGC 2 cut(s) 490, 693
LweI GCATC 1 cut(s) 961
MaeII ACGT 4 cut(s) 564, 804, 951, 1026
MaeIII GTNAC 1 cut(s) 606
MalI GATC 7 cut(s) 291, 446, 452, 632, 659, 728, 782
MbiI CCGCTC 1 cut(s) 514
MboI GATC 7 cut(s) 289, 444, 450, 630, 657, 726, 780
MboII GAAGA 9 cut(s) 25, 31, 145, 199, 259, 262, 445, 448, 688
MflI RGATCY 3 cut(s) 289, 450, 657
MluCI AATT 1 cut(s) 574
MlyI GAGTC 3 cut(s) 122, 182, 416
MmeI TCCRAC 3 cut(s) 435, 639, 843
MslI CAYNNNNRTG 1 cut(s) 803
MspA1I CMGCKG 2 cut(s) 961, 997
MspI CCGG 5 cut(s) 393, 473, 620, 723, 1030
MspR9I CCNGG 4 cut(s) 474, 620, 724, 785
MvaI CCWGG 1 cut(s) 785
MvnI CGCG 9 cut(s) 301, 311, 313, 518, 530, 870, 882, 884, 961
MwoI GCNNNNNNNGC 6 cut(s) 330, 478, 649, 814, 971, 1003
NciI CCSGG 3 cut(s) 474, 620, 724
NcoI CCATGG 1 cut(s) 132
NdeII GATC 7 cut(s) 289, 444, 450, 630, 657, 726, 780
NlaIII CATG 3 cut(s) 136, 721, 802
NlaIV GGNNCC 3 cut(s) 353, 642, 853
NspI RCATGY 1 cut(s) 721
PciI ACATGT 1 cut(s) 717
PcsI WCGNNNNNNNCGW 5 cut(s) 192, 644, 705, 711, 776
PfeI GAWTC 3 cut(s) 587, 635, 1018
PfoI TCCNGGA 2 cut(s) 722, 783
PkrI GCNGC 7 cut(s) 480, 654, 683, 925, 928, 957, 960
PleI GAGTC 3 cut(s) 122, 182, 415
PpsI GAGTC 3 cut(s) 122, 182, 415
PpuMI RGGWCCY 1 cut(s) 787
PscI ACATGT 1 cut(s) 717
Psp5II RGGWCCY 1 cut(s) 787
Psp6I CCWGG 1 cut(s) 783
PspFI CCCAGC 1 cut(s) 888
PspGI CCWGG 1 cut(s) 783
PspN4I GGNNCC 3 cut(s) 353, 642, 853
PspPI GGNCC 3 cut(s) 772, 787, 852
PspPPI RGGWCCY 1 cut(s) 787
PstNI CAGNNNCTG 1 cut(s) 790
PsuI RGATCY 3 cut(s) 289, 450, 657
PvuII CAGCTG 1 cut(s) 997
RsaI GTAC 3 cut(s) 404, 704, 879
RsaNI GTAC 3 cut(s) 403, 703, 878
RseI CAYNNNNRTG 1 cut(s) 803
Rsr2I CGGWCCG 1 cut(s) 772
RsrII CGGWCCG 1 cut(s) 772
SacII CCGCGG 1 cut(s) 962
SalI GTCGAC 1 cut(s) 646
SatI GCNGC 7 cut(s) 479, 653, 682, 924, 927, 956, 959
Sau3AI GATC 7 cut(s) 289, 444, 450, 630, 657, 726, 780
Sau96I GGNCC 3 cut(s) 772, 787, 852
SchI GAGTC 3 cut(s) 122, 182, 416
ScrFI CCNGG 4 cut(s) 474, 620, 724, 785
SfaNI GCATC 1 cut(s) 961
Sfr303I CCGCGG 1 cut(s) 962
SgrBI CCGCGG 1 cut(s) 962
SgrDI CGTCGACG 1 cut(s) 646
SinI GGWCC 2 cut(s) 772, 787
SmiMI CAYNNNNRTG 1 cut(s) 803
Sse9I AATT 1 cut(s) 574
StyD4I CCNGG 4 cut(s) 472, 618, 722, 783
StyI CCWWGG 2 cut(s) 132, 855
TaaI ACNGT 2 cut(s) 553, 776
TaiI ACGT 4 cut(s) 567, 807, 954, 1029
TaqI TCGA 8 cut(s) 225, 426, 443, 572, 633, 647, 699, 1021
TasI AATT 1 cut(s) 574
TauI GCSGC 5 cut(s) 655, 926, 929, 958, 961
TfiI GAWTC 3 cut(s) 587, 635, 1018
TseI GCWGC 2 cut(s) 478, 681
TspDTI ATGAA 3 cut(s) 145, 787, 968
TspGWI ACGGA 1 cut(s) 785
VpaK11BI GGWCC 2 cut(s) 772, 787
XceI RCATGY 1 cut(s) 721
XmiI GTMKAC 1 cut(s) 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.