pycom07g19130

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0015693
Physical Location & Seq
Forward (+)
21468816 .. 21470207
1392 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g19130.1

Sequence Viewer

Length: 1233 bp
ATGAAATTTTTGGAACCACGCGTTGCCGCCTGGCGGGACGCAACCTTACCTACACCTTACCCCCATTTCGTCGCCATTTCACAATTGACATCTCCTCTTCGTCTTCAACCTCCCGCTTTACCAGTGAGAAAGAGTGCGGTTTCACAGTCTAAGGCCTTGTGTGGCTGTTCCAAAATGTCCACCACCTCCATATTCCGCCTCCTCCACCTCCTCCTCCTCCTCCTCCTCCAATTCTCTTTTTCCTCCGTCCTCGCCGCCCACCCCAAACCCCTCACTTCCCCCAACCTTTCACCCGCCACGATCCACCCAAATTACCAAAACATGTTCAAATTCTTCAAGATCTTCATCTACAACCCAAACAGCACCTTCCCCTTCACCTCCCCATCCCAATCGCTCTTCTACACGCGCCTCCAGGACAGCCACTTCCCCACCGAAAACCCTGAAAAAGCCCACCTCTTCTTCGTCCCCTTCCCCTCCGATCTCCCCCCGCGCTCCGTCGCGCGCCTCATCAGATCCCTCCGCTCCGAGCTTCCCTACTGGAACCGCACCCTCGGCGCCGACCATTTCTATCTCTCATGCGCCGGCATCGGGTACGAATCGGATCGGAATCTCGTCGAGCTCAAGAAAAACTCGGTCCAGATCTCGTGCTTCCCGACGCCGGCCGGTAAGTTTATTCCCCACAAGGACATTTCGCTTCCGCCGGTCCCGAGCACTCCCGCGCCGACGAACAACACGGCGAGCATCTTGGCGTACGCCAGGTTCGATTGGGTCAAGGAGTCAACGTTAGTCAACCAATTGAGCAGCGACCCCGATTTTCTGATCGAATCCAAGCCGTCCGATCCCAATACCTTCGCGGACAGACTCGGCGGGAGTAAGTTCTGCTTGTTCGAGTACGGAGGAGGCGAAGTGTCGGGGATCGGGGAGGCGCTGCGTTTCGGTTGCGTGCCGGTGGTGATCACGGACCGTCCGATCCCGGACCTGCCGTTCTCGGACGTGCTGAGGTGGCAAGAGATCGCGGTGTTCGTGAGACGTAGTGGAGGGGTAGTGAGGGAGCTGAAGCGCGTGTTGGGGCGCGCGTGCTGGGAGCGGCACGAGAAGATGAGGGAGTTGGGTGTGGCTGCGAGTCGGCACTTTATGTGGAACGAGACACCGGAGCCGTTCGATGCGTTTTACACGTTGATGTATCAGCTGTGGCTGAGACGGCACACCGTTAGATACGTCAGGAGAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

411

Amino Acids

46.58

Weight (kDa)

9.48

Isoelectric Point (pI)

64.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 111 - 343 7.2e-28 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015693)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g23460
malus_domestica MD01G1140500.v1.1 MD07G1204800.v1.1
prunus_persica Prupe.2G241000_v2.0.a1
pyrus_communis pycom07g19130
rosa_chinensis RchiOBHm_Chr1g0368611
rosa_laevigata RLG00000020781 RLG00000027201
rosa_multiflora Rmu_sc0001791.1_g000003 Rmu_sc0011394.1_g000003
rosa_roxburghii Rroxscaffold_4G00288410
rosa_rugosa Rorug01G0343100
rosa_samantha Rh1AG350400 Rh1BG313700 Rh1CG328300 Rh1DG345100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 987
AccB1I GGYRCC 1 cut(s) 554
AccBSI CCGCTC 2 cut(s) 522, 1087
AclI AACGTT 1 cut(s) 782
AclWI GGATC 6 cut(s) 295, 507, 609, 833, 923, 964
AcoI YGGCCR 1 cut(s) 660
AcsI RAATTY 2 cut(s) 5, 329
AcuI CTGAAG 1 cut(s) 1076
AcyI GRCGYC 2 cut(s) 555, 656
AfaI GTAC 3 cut(s) 593, 752, 893
AfiI CCNNNNNNNGG 3 cut(s) 33, 588, 658
AflIII ACRYGT 3 cut(s) 19, 321, 1173
AgsI TTSAA 3 cut(s) 107, 328, 337
AjiI CACGTC 1 cut(s) 994
AjnI CCWGG 3 cut(s) 29, 411, 755
AjuI GAANNNNNNNTTGG 2 cut(s) 1049, 1081
AloI GAACNNNNNNTCC 2 cut(s) 968, 1000
AluBI AGCT 4 cut(s) 529, 619, 1054, 1189
AluI AGCT 4 cut(s) 529, 619, 1054, 1189
Alw21I GWGCWC 2 cut(s) 621, 713
Alw26I GTCTC 3 cut(s) 1021, 1139, 1192
AlwI GGATC 6 cut(s) 295, 507, 609, 833, 923, 964
Ama87I CYCGRG 1 cut(s) 706
AoxI GGCC 2 cut(s) 153, 660
ApeKI GCWGC 3 cut(s) 801, 928, 1118
ApoI RAATTY 2 cut(s) 5, 329
AspS9I GGNCC 4 cut(s) 634, 703, 961, 976
AsuC2I CCSGG 1 cut(s) 974
AsuHPI GGTGA 3 cut(s) 282, 367, 964
AvaI CYCGRG 1 cut(s) 706
AvaII GGWCC 4 cut(s) 634, 703, 961, 976
BanI GGYRCC 1 cut(s) 554
BanII GRGCYC 1 cut(s) 621
BauI CACGAG 2 cut(s) 643, 1091
BbsI GAAGAC 1 cut(s) 95
Bbv12I GWGCWC 2 cut(s) 621, 713
BbvCI CCTCAGC 1 cut(s) 998
BbvI GCAGC 3 cut(s) 813, 915, 1105
BccI CCATC 1 cut(s) 391
BceAI ACGGC 5 cut(s) 750, 817, 967, 1141, 1217
BciT130I CCWGG 3 cut(s) 31, 413, 757
BclI TGATCA 1 cut(s) 954
BcnI CCSGG 1 cut(s) 974
BcoDI GTCTC 3 cut(s) 1021, 1139, 1192
BfoI RGCGCY 2 cut(s) 558, 929
BfuAI ACCTGC 1 cut(s) 987
BglII AGATCT 2 cut(s) 339, 639
BisI GCNGC 6 cut(s) 27, 255, 802, 929, 1088, 1119
BlsI GCNGC 6 cut(s) 28, 256, 803, 930, 1089, 1120
Bme1390I CCNGG 4 cut(s) 31, 413, 757, 974
Bme18I GGWCC 4 cut(s) 634, 703, 961, 976
BmeT110I CYCGRG 1 cut(s) 706
BmgBI CACGTC 1 cut(s) 994
BmgT120I GGNCC 4 cut(s) 634, 703, 961, 976
BmiI GGNNCC 5 cut(s) 15, 542, 556, 705, 1155
BmrFI CCNGG 4 cut(s) 31, 413, 757, 974
BmsI GCATC 3 cut(s) 594, 750, 1153
BpiI GAAGAC 1 cut(s) 95
BpmI CTGGAG 1 cut(s) 395
Bpu10I CCTNAGC 1 cut(s) 998
BpuEI CTTGAG 1 cut(s) 605
BpuMI CCSGG 1 cut(s) 974
BsaBI GATNNNNATC 2 cut(s) 344, 606
BsaHI GRCGYC 2 cut(s) 555, 656
BsaJI CCNNGG 1 cut(s) 550
BsaWI WCCGGW 1 cut(s) 1150
BsaXI ACNNNNNCTCC 6 cut(s) 767, 797, 891, 921, 1029, 1059
Bsc4I CCNNNNNNNGG 3 cut(s) 33, 588, 658
Bse118I RCCGGY 5 cut(s) 581, 658, 662, 700, 946
Bse1I ACTGG 2 cut(s) 122, 542
Bse8I GATNNNNATC 2 cut(s) 344, 606
BseBI CCWGG 3 cut(s) 31, 413, 757
BseDI CCNNGG 1 cut(s) 550
BseGI GGATG 1 cut(s) 383
BseJI GATNNNNATC 2 cut(s) 344, 606
BseLI CCNNNNNNNGG 3 cut(s) 33, 588, 658
BseMII CTCAG 2 cut(s) 989, 1187
BseNI ACTGG 2 cut(s) 122, 542
BsePI GCGCGC 2 cut(s) 500, 1072
BseRI GAGGAG 9 cut(s) 84, 191, 200, 203, 206, 209, 212, 215, 912
BseX3I CGGCCG 1 cut(s) 660
BseXI GCAGC 3 cut(s) 813, 915, 1105
BseYI CCCAGC 1 cut(s) 1080
Bsh1285I CGRYCG 1 cut(s) 663
BshFI GGCC 2 cut(s) 155, 662
BshNI GGYRCC 1 cut(s) 554
BsiEI CGRYCG 1 cut(s) 663
BsiHKAI GWGCWC 2 cut(s) 621, 713
BsiHKCI CYCGRG 1 cut(s) 706
BsiSI CCGG 7 cut(s) 582, 659, 663, 701, 947, 974, 1151
BsiWI CGTACG 1 cut(s) 750
BslFI GGGAC 3 cut(s) 50, 449, 689
BslI CCNNNNNNNGG 3 cut(s) 33, 588, 658
BsmAI GTCTC 3 cut(s) 1021, 1139, 1192
BsmBI CGTCTC 2 cut(s) 1021, 1192
BsmFI GGGAC 3 cut(s) 50, 449, 689
BsnI GGCC 2 cut(s) 155, 662
BsoBI CYCGRG 1 cut(s) 706
Bsp1286I GDGCHC 2 cut(s) 621, 713
BspANI GGCC 2 cut(s) 155, 662
BspCNI CTCAG 2 cut(s) 990, 1188
BspLI GGNNCC 5 cut(s) 15, 542, 556, 705, 1155
BspMI ACCTGC 1 cut(s) 987
BspPI GGATC 6 cut(s) 295, 507, 609, 833, 923, 964
BspQI GCTCTTC 1 cut(s) 401
BspT107I GGYRCC 1 cut(s) 554
BsrBI CCGCTC 2 cut(s) 522, 1087
BsrFI RCCGGY 5 cut(s) 581, 658, 662, 700, 946
BsrI ACTGG 2 cut(s) 122, 542
BssAI RCCGGY 5 cut(s) 581, 658, 662, 700, 946
BssECI CCNNGG 1 cut(s) 550
BssHII GCGCGC 2 cut(s) 500, 1072
BssNI GRCGYC 2 cut(s) 555, 656
BssSI CACGAG 2 cut(s) 643, 1091
Bst2BI CACGAG 2 cut(s) 643, 1091
Bst2UI CCWGG 3 cut(s) 31, 413, 757
Bst4CI ACNGT 3 cut(s) 147, 965, 1210
Bst6I CTCTTC 3 cut(s) 102, 401, 461
BstACI GRCGYC 2 cut(s) 555, 656
BstC8I GCNNGC 7 cut(s) 502, 583, 660, 739, 944, 1074, 1078
BstDEI CTNAG 3 cut(s) 150, 998, 1196
BstF5I GGATG 1 cut(s) 383
BstH2I RGCGCY 2 cut(s) 558, 929
BstMAI GTCTC 3 cut(s) 1021, 1139, 1192
BstMCI CGRYCG 1 cut(s) 663
BstMWI GCNNNNNNNGC 3 cut(s) 552, 1003, 1201
BstNI CCWGG 3 cut(s) 31, 413, 757
BstNSI RCATGY 1 cut(s) 325
BstSCI CCNGG 4 cut(s) 29, 411, 755, 972
BstV1I GCAGC 3 cut(s) 813, 915, 1105
BstV2I GAAGAC 1 cut(s) 95
BstX2I RGATCY 3 cut(s) 339, 512, 639
BstYI RGATCY 3 cut(s) 339, 512, 639
BstZI CGGCCG 1 cut(s) 660
BsuRI GGCC 2 cut(s) 155, 662
BtrI CACGTC 1 cut(s) 994
BtsCI GGATG 1 cut(s) 383
BtsIMutI CAGTG 1 cut(s) 129
BveI ACCTGC 1 cut(s) 987
Cac8I GCNNGC 7 cut(s) 502, 583, 660, 739, 944, 1074, 1078
Cfr10I RCCGGY 5 cut(s) 581, 658, 662, 700, 946
Cfr13I GGNCC 4 cut(s) 634, 703, 961, 976
CpoI CGGWCCG 1 cut(s) 961
CseI GACGC 2 cut(s) 47, 664
Csp6I GTAC 3 cut(s) 592, 751, 892
CspI CGGWCCG 1 cut(s) 961
CviAII CATG 2 cut(s) 322, 576
CviQI GTAC 3 cut(s) 592, 751, 892
DdeI CTNAG 3 cut(s) 150, 998, 1196
DinI GGCGCC 1 cut(s) 556
EaeI YGGCCR 1 cut(s) 660
EagI CGGCCG 1 cut(s) 660
Eam1104I CTCTTC 3 cut(s) 102, 401, 461
EarI CTCTTC 3 cut(s) 102, 401, 461
EciI GGCGGA 2 cut(s) 185, 687
Ecl136II GAGCTC 1 cut(s) 619
EclXI CGGCCG 1 cut(s) 660
Eco147I AGGCCT 1 cut(s) 155
Eco24I GRGCYC 1 cut(s) 621
Eco47I GGWCC 4 cut(s) 634, 703, 961, 976
Eco52I CGGCCG 1 cut(s) 660
Eco53kI GAGCTC 1 cut(s) 619
Eco57I CTGAAG 1 cut(s) 1076
Eco88I CYCGRG 1 cut(s) 706
EcoICRI GAGCTC 1 cut(s) 619
EcoRII CCWGG 3 cut(s) 29, 411, 755
EcoT38I GRGCYC 1 cut(s) 621
EgeI GGCGCC 1 cut(s) 556
EheI GGCGCC 1 cut(s) 556
Esp3I CGTCTC 2 cut(s) 1021, 1192
FaeI CATG 2 cut(s) 325, 579
FaiI YATR 4 cut(s) 191, 323, 577, 1136
FalI AAGNNNNNCTT 2 cut(s) 866, 898
FaqI GGGAC 3 cut(s) 50, 449, 689
FatI CATG 2 cut(s) 321, 575
FauI CCCGC 6 cut(s) 27, 121, 301, 495, 724, 860
FbaI TGATCA 1 cut(s) 954
Fnu4HI GCNGC 6 cut(s) 27, 255, 802, 929, 1088, 1119
FokI GGATG 1 cut(s) 370
FriOI GRGCYC 1 cut(s) 621
Fsp4HI GCNGC 6 cut(s) 27, 255, 802, 929, 1088, 1119
GluI GCNGC 6 cut(s) 27, 255, 802, 929, 1088, 1119
GsaI CCCAGC 1 cut(s) 1084
GsuI CTGGAG 1 cut(s) 395
HaeII RGCGCY 2 cut(s) 558, 929
HaeIII GGCC 2 cut(s) 155, 662
HapII CCGG 7 cut(s) 582, 659, 663, 701, 947, 974, 1151
HgaI GACGC 2 cut(s) 47, 664
Hin1I GRCGYC 2 cut(s) 555, 656
Hin1II CATG 2 cut(s) 325, 579
HincII GTYRAC 2 cut(s) 780, 790
HindII GTYRAC 2 cut(s) 780, 790
HinfI GANTC 6 cut(s) 596, 607, 776, 824, 861, 1123
HpaII CCGG 7 cut(s) 582, 659, 663, 701, 947, 974, 1151
HphI GGTGA 3 cut(s) 282, 367, 964
Hpy166II GTNNAC 3 cut(s) 180, 780, 790
Hpy188I TCNGA 9 cut(s) 478, 512, 526, 601, 606, 819, 838, 969, 991
Hpy188III TCNNGA 7 cut(s) 337, 622, 637, 652, 706, 1024, 1222
Hpy8I GTNNAC 3 cut(s) 180, 780, 790
Hpy99I CGWCG 5 cut(s) 74, 500, 617, 658, 727
HpyAV CCTTC 4 cut(s) 376, 382, 478, 859
HpyCH4III ACNGT 3 cut(s) 147, 965, 1210
HpyCH4IV ACGT 5 cut(s) 782, 993, 1030, 1175, 1218
HpyF10VI GCNNNNNNNGC 3 cut(s) 552, 1003, 1201
HpyF3I CTNAG 3 cut(s) 150, 998, 1196
HpySE526I ACGT 5 cut(s) 782, 993, 1030, 1175, 1218
Hsp92I GRCGYC 2 cut(s) 555, 656
Hsp92II CATG 2 cut(s) 325, 579
KasI GGCGCC 1 cut(s) 554
KroI GCCGGC 2 cut(s) 581, 658
KroNI GCCGGC 2 cut(s) 583, 660
Ksp22I TGATCA 1 cut(s) 954
LguI GCTCTTC 1 cut(s) 401
LmnI GCTCC 5 cut(s) 497, 527, 1051, 1084, 1153
Lsp1109I GCAGC 3 cut(s) 813, 915, 1105
LweI GCATC 3 cut(s) 594, 750, 1153
MaeII ACGT 5 cut(s) 782, 993, 1030, 1175, 1218
MbiI CCGCTC 2 cut(s) 522, 1087
MboII GAAGA 8 cut(s) 89, 95, 325, 334, 388, 448, 451, 1108
MfeI CAATTG 2 cut(s) 83, 794
MflI RGATCY 3 cut(s) 339, 512, 639
MhlI GDGCHC 2 cut(s) 621, 713
MluCI AATT 6 cut(s) 5, 83, 230, 310, 329, 794
MluI ACGCGT 1 cut(s) 19
Mly113I GGCGCC 1 cut(s) 555
MlyI GAGTC 3 cut(s) 785, 855, 1132
MroNI GCCGGC 2 cut(s) 581, 658
MslI CAYNNNNRTG 1 cut(s) 1178
MspA1I CMGCKG 1 cut(s) 1189
MspI CCGG 7 cut(s) 582, 659, 663, 701, 947, 974, 1151
MspR9I CCNGG 4 cut(s) 31, 413, 757, 974
MunI CAATTG 2 cut(s) 83, 794
MvaI CCWGG 3 cut(s) 31, 413, 757
MwoI GCNNNNNNNGC 3 cut(s) 552, 1003, 1201
NaeI GCCGGC 2 cut(s) 583, 660
NarI GGCGCC 1 cut(s) 555
NciI CCSGG 1 cut(s) 974
NgoMIV GCCGGC 2 cut(s) 581, 658
NlaIII CATG 2 cut(s) 325, 579
NlaIV GGNNCC 5 cut(s) 15, 542, 556, 705, 1155
NmeAIII GCCGAG 2 cut(s) 531, 843
NspI RCATGY 1 cut(s) 325
PauI GCGCGC 2 cut(s) 500, 1072
PceI AGGCCT 1 cut(s) 155
PciI ACATGT 1 cut(s) 321
PciSI GCTCTTC 1 cut(s) 401
PcsI WCGNNNNNNNCGW 5 cut(s) 650, 759, 900, 965, 1020
PdiI GCCGGC 2 cut(s) 583, 660
PfeI GAWTC 3 cut(s) 596, 607, 824
Pfl23II CGTACG 1 cut(s) 750
PfoI TCCNGGA 2 cut(s) 411, 972
PkrI GCNGC 6 cut(s) 28, 256, 803, 930, 1089, 1120
PleI GAGTC 3 cut(s) 784, 855, 1131
PluTI GGCGCC 1 cut(s) 558
PpsI GAGTC 3 cut(s) 784, 855, 1131
PscI ACATGT 1 cut(s) 321
Psp124BI GAGCTC 1 cut(s) 621
Psp1406I AACGTT 1 cut(s) 782
Psp6I CCWGG 3 cut(s) 29, 411, 755
PspFI CCCAGC 1 cut(s) 1080
PspGI CCWGG 3 cut(s) 29, 411, 755
PspLI CGTACG 1 cut(s) 750
PspN4I GGNNCC 5 cut(s) 15, 542, 556, 705, 1155
PspPI GGNCC 4 cut(s) 634, 703, 961, 976
PsrI GAACNNNNNNTAC 2 cut(s) 743, 775
PsuI RGATCY 3 cut(s) 339, 512, 639
PteI GCGCGC 2 cut(s) 500, 1072
PvuII CAGCTG 1 cut(s) 1189
RsaI GTAC 3 cut(s) 593, 752, 893
RsaNI GTAC 3 cut(s) 592, 751, 892
RseI CAYNNNNRTG 1 cut(s) 1178
Rsr2I CGGWCCG 1 cut(s) 961
RsrII CGGWCCG 1 cut(s) 961
SacI GAGCTC 1 cut(s) 621
SapI GCTCTTC 1 cut(s) 401
SatI GCNGC 6 cut(s) 27, 255, 802, 929, 1088, 1119
Sau96I GGNCC 4 cut(s) 634, 703, 961, 976
SchI GAGTC 3 cut(s) 785, 855, 1132
ScrFI CCNGG 4 cut(s) 31, 413, 757, 974
SduI GDGCHC 2 cut(s) 621, 713
SfaNI GCATC 3 cut(s) 594, 750, 1153
SfoI GGCGCC 1 cut(s) 556
SinI GGWCC 4 cut(s) 634, 703, 961, 976
SmiMI CAYNNNNRTG 1 cut(s) 1178
SmlI CTYRAG 1 cut(s) 620
SmoI CTYRAG 1 cut(s) 620
Sse9I AATT 6 cut(s) 5, 83, 230, 310, 329, 794
SseBI AGGCCT 1 cut(s) 155
SspDI GGCGCC 1 cut(s) 554
SstI GAGCTC 1 cut(s) 621
StuI AGGCCT 1 cut(s) 155
StyD4I CCNGG 4 cut(s) 29, 411, 755, 972
TaaI ACNGT 3 cut(s) 147, 965, 1210
TaiI ACGT 5 cut(s) 785, 996, 1033, 1178, 1221
TaqI TCGA 5 cut(s) 615, 762, 822, 888, 1161
TaqII GACCGA 1 cut(s) 622
TasI AATT 6 cut(s) 5, 83, 230, 310, 329, 794
TauI GCSGC 3 cut(s) 29, 257, 1090
TfiI GAWTC 3 cut(s) 596, 607, 824
TscAI CASTG 1 cut(s) 129
TseI GCWGC 3 cut(s) 801, 928, 1118
TspDTI ATGAA 2 cut(s) 17, 334
TspGWI ACGGA 4 cut(s) 235, 484, 909, 974
TspRI CASTG 1 cut(s) 129
VpaK11BI GGWCC 4 cut(s) 634, 703, 961, 976
XapI RAATTY 2 cut(s) 5, 329
XceI RCATGY 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.