Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0013715

Physical Location & Seq

Genomic Coordinates Reverse (-)

18515002 .. 18516014

Gene Structure 1013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g23851.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTCAGCTCAGACATCAGGATCACTTATGTCTGGATTACCAGATACATCCTTGTCAACAAGTCAGACAAGTATCAGCTCTACAAGCTTAAACTATGCAAATATGCGCATTAAAGATTTGTCTTTCAGTCAGGAGAATTCCTTGGGATTTCCAGAACACGTCAACTCTAGTGCCATCCCTATGTCCCCTGGTAGCAAAGGAATCACGGGACAGTCTAACCTTGATTCACCAACATCATCTTTGTCCCTCCATCGGAAATTCTCTACTTATGCAGAGAGAATAGGCACTACATCTTCCTTCAGCGACCGAACATCACTTGCAGCGGGTTCACCAAAAACAAAGAAAACAGGAGCTGAAATGAGAGAATTGTTGACTAGCTTGGTGTCTAAGTCAGATACATCAACGGTCACAGAATCAGGGATTCTTCCAGCTATGAACGGAGGAACCTCACAATTGCCCAAGGCCCCTCAACAAGATGCCCAGCAGGGAAATTCATTTACATATCAGATTTTACAACGTACTCTACAAGAGACTCTTGATTCCTTTCAGAAGTCGGTACATGAAGATATGAGGAGCCTTCATATAGAAATTTTAAGACAATTTCACATGCAAGAGACGGAAATGTCAATGGTAATGAGTAAAATGCTGGCAAACCAAGCTGAGCTAATGGAAGAAGTTAAATCTCTGCGGAAAGAAAACCAGCAACTCCGACAACAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000242 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0000922 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005813 GO:0005814 GO:0005815 GO:0005819 GO:0005828 GO:0005856 GO:0005874 GO:0005876 GO:0005929 GO:0007049 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0009553 GO:0009555 GO:0009987 GO:0010564 GO:0015630 GO:0016043 GO:0022402 GO:0022607 GO:0032465 GO:0032467 GO:0032501 GO:0032502 GO:0032506 GO:0032886 GO:0033036 GO:0033043 GO:0033365 GO:0034613 GO:0036064 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044380 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044450 GO:0044463 GO:0044464 GO:0045787 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051128 GO:0051179 GO:0051301 GO:0051302 GO:0051493 GO:0051641 GO:0051726 GO:0051781 GO:0060236 GO:0061640 GO:0065007 GO:0070507 GO:0070727 GO:0071539 GO:0071840 GO:0072698 GO:0090068 GO:0090224 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0120025 GO:0120038 GO:1902410 GO:1903047 GO:1905508 GO:2000694

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

241

Amino Acids

26.27

Weight (kDa)

6.53

Isoelectric Point (pI)

60.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013715)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g23851
rosa_chinensis	RchiOBHm_Chr1g0315431 RchiOBHm_Chr1g0324411 RchiOBHm_Chr1g0369591 RchiOBHm_Chr1g0381171 RchiOBHm_Chr2g0121141 RchiOBHm_Chr4g0394831 RchiOBHm_Chr4g0410241
rosa_multiflora	Rmu_sc0002669.1_g000014 Rmu_sc0008148.1_g000053 Rmu_sc0015525.1_g000009
rosa_roxburghii	Rroxscaffold_4G00287500
rosa_samantha	Rh2CG617500 Rh2DG665300 Rh3DG296700 Rh5AG529800 Rh5CG208600
rosa_wichuraiana	Rw2G052700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	622
Acc16I	TGCGCA	1 cut(s)	107
AciI	CCGC	2 cut(s)	323, 688
AclWI	GGATC	1 cut(s)	28
AcsI	RAATTY	4 cut(s)	136, 257, 490, 588
AcuI	CTGAAG	1 cut(s)	283
AfaI	GTAC	2 cut(s)	520, 558
AfiI	CCNNNNNNNGG	1 cut(s)	252
AflIII	ACRYGT	1 cut(s)	157
AjiI	CACGTC	1 cut(s)	160
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	9 cut(s)	8, 78, 87, 353, 378, 431, 659, 664, 718
AluI	AGCT	9 cut(s)	8, 78, 87, 353, 378, 431, 659, 664, 718
Alw26I	GTCTC	2 cut(s)	524, 608
AlwI	GGATC	1 cut(s)	28
AlwNI	CAGNNNCTG	1 cut(s)	353
AoxI	GGCC	1 cut(s)	462
ApeKI	GCWGC	1 cut(s)	320
ApoI	RAATTY	4 cut(s)	136, 257, 490, 588
ArsI	GACNNNNNNTTYG	1 cut(s)	702
AspLEI	GCGC	1 cut(s)	108
AspS9I	GGNCC	1 cut(s)	463
AsuHPI	GGTGA	2 cut(s)	219, 321
BbvI	GCAGC	1 cut(s)	332
BccI	CCATC	2 cut(s)	182, 258
BciT130I	CCWGG	1 cut(s)	189
BcoDI	GTCTC	2 cut(s)	524, 608
BfaI	CTAG	2 cut(s)	168, 375
BisI	GCNGC	1 cut(s)	321
BlpI	GCTNAGC	1 cut(s)	660
BlsI	GCNGC	1 cut(s)	322
Bme1390I	CCNGG	1 cut(s)	189
BmgBI	CACGTC	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	463
BmiI	GGNNCC	3 cut(s)	445, 465, 575
BmrFI	CCNGG	1 cut(s)	189
BmsI	GCATC	1 cut(s)	466
Bpu1102I	GCTNAGC	1 cut(s)	660
BsaJI	CCNNGG	3 cut(s)	141, 187, 459
Bsc4I	CCNNNNNNNGG	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	3 cut(s)	141, 187, 459
BseGI	GGATG	2 cut(s)	47, 174
BseLI	CCNNNNNNNGG	1 cut(s)	252
BseMII	CTCAG	2 cut(s)	23, 651
BseRI	GAGGAG	1 cut(s)	586
BseXI	GCAGC	1 cut(s)	332
BseYI	CCCAGC	1 cut(s)	480
Bsh1285I	CGRYCG	1 cut(s)	307
BshFI	GGCC	1 cut(s)	464
BsiEI	CGRYCG	1 cut(s)	307
BslFI	GGGAC	3 cut(s)	169, 222, 229
BslI	CCNNNNNNNGG	1 cut(s)	252
BsmAI	GTCTC	2 cut(s)	524, 608
BsmBI	CGTCTC	1 cut(s)	608
BsmFI	GGGAC	3 cut(s)	169, 222, 229
BsnI	GGCC	1 cut(s)	464
Bsp143I	GATC	1 cut(s)	20
Bsp1720I	GCTNAGC	1 cut(s)	660
BspACI	CCGC	2 cut(s)	323, 688
BspANI	GGCC	1 cut(s)	464
BspCNI	CTCAG	2 cut(s)	22, 652
BspLI	GGNNCC	3 cut(s)	445, 465, 575
BspPI	GGATC	1 cut(s)	28
BssECI	CCNNGG	3 cut(s)	141, 187, 459
BssMI	GATC	1 cut(s)	20
BssT1I	CCWWGG	2 cut(s)	141, 459
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	2 cut(s)	213, 406
BstC8I	GCNNGC	1 cut(s)	648
BstDEI	CTNAG	3 cut(s)	9, 387, 660
BstF5I	GGATG	2 cut(s)	47, 174
BstHHI	GCGC	1 cut(s)	108
BstKTI	GATC	1 cut(s)	23
BstMAI	GTCTC	2 cut(s)	524, 608
BstMBI	GATC	1 cut(s)	20
BstMCI	CGRYCG	1 cut(s)	307
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 656
BstNI	CCWGG	1 cut(s)	189
BstNSI	RCATGY	1 cut(s)	610
BstSCI	CCNGG	1 cut(s)	187
BstV1I	GCAGC	1 cut(s)	332
BsuRI	GGCC	1 cut(s)	464
BtrI	CACGTC	1 cut(s)	160
BtsCI	GGATG	2 cut(s)	47, 174
Cac8I	GCNNGC	1 cut(s)	648
CaiI	CAGNNNCTG	1 cut(s)	353
CfoI	GCGC	1 cut(s)	108
Cfr13I	GGNCC	1 cut(s)	463
Csp6I	GTAC	2 cut(s)	519, 557
CviAII	CATG	2 cut(s)	560, 607
CviQI	GTAC	2 cut(s)	519, 557
DdeI	CTNAG	3 cut(s)	9, 387, 660
DpnI	GATC	1 cut(s)	22
DpnII	GATC	1 cut(s)	20
DrdI	GACNNNNNNGTC	1 cut(s)	622
DseDI	GACNNNNNNGTC	1 cut(s)	622
Eco130I	CCWWGG	2 cut(s)	141, 459
Eco57I	CTGAAG	1 cut(s)	283
EcoO109I	RGGNCCY	1 cut(s)	463
EcoRI	GAATTC	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	187
EcoT14I	CCWWGG	2 cut(s)	141, 459
ErhI	CCWWGG	2 cut(s)	141, 459
Esp3I	CGTCTC	1 cut(s)	608
FaeI	CATG	2 cut(s)	563, 610
FalI	AAGNNNNNCTT	2 cut(s)	519, 551
FaqI	GGGAC	3 cut(s)	169, 222, 229
FatI	CATG	2 cut(s)	559, 606
FauI	CCCGC	1 cut(s)	316
Fnu4HI	GCNGC	1 cut(s)	321
FokI	GGATG	2 cut(s)	34, 161
Fsp4HI	GCNGC	1 cut(s)	321
FspAI	RTGCGCAY	1 cut(s)	107
FspBI	CTAG	2 cut(s)	168, 375
FspI	TGCGCA	1 cut(s)	107
GlaI	GCGC	1 cut(s)	107
GluI	GCNGC	1 cut(s)	321
GsaI	CCCAGC	1 cut(s)	484
HaeIII	GGCC	1 cut(s)	464
HhaI	GCGC	1 cut(s)	108
Hin1II	CATG	2 cut(s)	563, 610
Hin6I	GCGC	1 cut(s)	106
HinP1I	GCGC	1 cut(s)	106
HincII	GTYRAC	3 cut(s)	57, 163, 372
HindII	GTYRAC	3 cut(s)	57, 163, 372
HindIII	AAGCTT	1 cut(s)	85
HinfI	GANTC	6 cut(s)	201, 224, 413, 421, 532, 539
HphI	GGTGA	2 cut(s)	219, 321
Hpy166II	GTNNAC	4 cut(s)	57, 163, 329, 372
Hpy188I	TCNGA	7 cut(s)	12, 66, 255, 394, 507, 549, 710
Hpy188III	TCNNGA	5 cut(s)	18, 33, 131, 152, 536
Hpy8I	GTNNAC	4 cut(s)	57, 163, 329, 372
HpyAV	CCTTC	2 cut(s)	307, 587
HpyCH4III	ACNGT	2 cut(s)	213, 406
HpyCH4IV	ACGT	2 cut(s)	159, 517
HpyCH4V	TGCA	4 cut(s)	98, 272, 320, 610
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 656
HpyF3I	CTNAG	3 cut(s)	9, 387, 660
HpySE526I	ACGT	2 cut(s)	159, 517
Hsp92II	CATG	2 cut(s)	563, 610
HspAI	GCGC	1 cut(s)	106
Kzo9I	GATC	1 cut(s)	20
LmnI	GCTCC	2 cut(s)	350, 573
Lsp1109I	GCAGC	1 cut(s)	332
LweI	GCATC	1 cut(s)	466
MaeI	CTAG	2 cut(s)	168, 375
MaeII	ACGT	2 cut(s)	159, 517
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	1 cut(s)	22
MboI	GATC	1 cut(s)	20
MboII	GAAGA	4 cut(s)	285, 416, 575, 683
MfeI	CAATTG	1 cut(s)	452
MluCI	AATT	7 cut(s)	136, 257, 365, 452, 490, 588, 599
MlyI	GAGTC	1 cut(s)	526
MnlI	CCTC	5 cut(s)	257, 434, 457, 477, 564
MseI	TTAA	4 cut(s)	89, 111, 593, 678
MslI	CAYNNNNRTG	1 cut(s)	179
MspA1I	CMGCKG	1 cut(s)	323
MspR9I	CCNGG	1 cut(s)	189
MunI	CAATTG	1 cut(s)	452
MvaI	CCWGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	2 cut(s)	84, 656
NdeII	GATC	1 cut(s)	20
NlaIII	CATG	2 cut(s)	563, 610
NlaIV	GGNNCC	3 cut(s)	445, 465, 575
NmuCI	GTSAC	1 cut(s)	406
NsbI	TGCGCA	1 cut(s)	107
NspI	RCATGY	1 cut(s)	610
PfeI	GAWTC	5 cut(s)	201, 224, 413, 421, 539
PkrI	GCNGC	1 cut(s)	322
PleI	GAGTC	1 cut(s)	526
PpsI	GAGTC	1 cut(s)	526
Psp6I	CCWGG	1 cut(s)	187
PspFI	CCCAGC	1 cut(s)	480
PspGI	CCWGG	1 cut(s)	187
PspN4I	GGNNCC	3 cut(s)	445, 465, 575
PspPI	GGNCC	1 cut(s)	463
PstNI	CAGNNNCTG	1 cut(s)	353
RsaI	GTAC	2 cut(s)	520, 558
RsaNI	GTAC	2 cut(s)	519, 557
RseI	CAYNNNNRTG	1 cut(s)	179
SaqAI	TTAA	4 cut(s)	89, 111, 593, 678
SatI	GCNGC	1 cut(s)	321
Sau3AI	GATC	1 cut(s)	20
Sau96I	GGNCC	1 cut(s)	463
SchI	GAGTC	1 cut(s)	526
ScrFI	CCNGG	1 cut(s)	189
SfaNI	GCATC	1 cut(s)	466
SmiMI	CAYNNNNRTG	1 cut(s)	179
Sse9I	AATT	7 cut(s)	136, 257, 365, 452, 490, 588, 599
SsiI	CCGC	2 cut(s)	323, 688
SspMI	CTAG	2 cut(s)	168, 375
StyD4I	CCNGG	1 cut(s)	187
StyI	CCWWGG	2 cut(s)	141, 459
TaaI	ACNGT	2 cut(s)	213, 406
TaiI	ACGT	2 cut(s)	162, 520
TaqII	GACCGA	1 cut(s)	321
TasI	AATT	7 cut(s)	136, 257, 365, 452, 490, 588, 599
TfiI	GAWTC	5 cut(s)	201, 224, 413, 421, 539
Tru1I	TTAA	4 cut(s)	89, 111, 593, 678
Tru9I	TTAA	4 cut(s)	89, 111, 593, 678
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	1 cut(s)	320
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	4 cut(s)	449, 483, 569, 576
TspGWI	ACGGA	2 cut(s)	453, 632
XapI	RAATTY	4 cut(s)	136, 257, 490, 588
XceI	RCATGY	1 cut(s)	610
XspI	CTAG	2 cut(s)	168, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.