Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0013715

Physical Location & Seq

Genomic Coordinates Reverse (-)

8526068 .. 8529401

Gene Structure 3334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00287500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

ATGTTACAAGTCTCTGCTGGCAAAGGTCAAAATCATCTGTCTACTAGCTTGGTGTCTAAGTCAGATACATCAACTGCCACAGAATCAGGGGTTCTTCCAGCAATGAACGGAGGAACCTCAAAACTGCAGAAGGCCCCTGAACAAGATGTGCAGCAGGGAAATTCCTTTGCGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000242 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0000922 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005813 GO:0005814 GO:0005815 GO:0005819 GO:0005828 GO:0005856 GO:0005874 GO:0005876 GO:0005929 GO:0007049 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0009553 GO:0009555 GO:0009987 GO:0010564 GO:0015630 GO:0016043 GO:0022402 GO:0022607 GO:0032465 GO:0032467 GO:0032501 GO:0032502 GO:0032506 GO:0032886 GO:0033036 GO:0033043 GO:0033365 GO:0034613 GO:0036064 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044380 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044450 GO:0044463 GO:0044464 GO:0045787 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051128 GO:0051179 GO:0051301 GO:0051302 GO:0051493 GO:0051641 GO:0051726 GO:0051781 GO:0060236 GO:0061640 GO:0065007 GO:0070507 GO:0070727 GO:0071539 GO:0071840 GO:0072698 GO:0090068 GO:0090224 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0120025 GO:0120038 GO:1902410 GO:1903047 GO:1905508 GO:2000694

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

58

Amino Acids

5.97

Weight (kDa)

6.52

Isoelectric Point (pI)

38.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013715)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g23851
rosa_chinensis	RchiOBHm_Chr1g0315431 RchiOBHm_Chr1g0324411 RchiOBHm_Chr1g0369591 RchiOBHm_Chr1g0381171 RchiOBHm_Chr2g0121141 RchiOBHm_Chr4g0394831 RchiOBHm_Chr4g0410241
rosa_multiflora	Rmu_sc0002669.1_g000014 Rmu_sc0008148.1_g000053 Rmu_sc0015525.1_g000009
rosa_roxburghii	Rroxscaffold_4G00287500
rosa_samantha	Rh2CG617500 Rh2DG665300 Rh3DG296700 Rh5AG529800 Rh5CG208600
rosa_wichuraiana	Rw2G052700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	41
AcsI	RAATTY	1 cut(s)	160
AluBI	AGCT	1 cut(s)	48
AluI	AGCT	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	16
AoxI	GGCC	1 cut(s)	132
ApeKI	GCWGC	1 cut(s)	151
ApoI	RAATTY	1 cut(s)	160
AspS9I	GGNCC	1 cut(s)	133
BbvI	GCAGC	1 cut(s)	163
BcoDI	GTCTC	1 cut(s)	16
BfaI	CTAG	1 cut(s)	45
BfmI	CTRYAG	1 cut(s)	125
BisI	GCNGC	1 cut(s)	152
BlsI	GCNGC	1 cut(s)	153
BmgT120I	GGNCC	1 cut(s)	133
BmiI	GGNNCC	2 cut(s)	115, 135
Bse3DI	GCAATG	1 cut(s)	108
BseMI	GCAATG	1 cut(s)	108
BseXI	GCAGC	1 cut(s)	163
BsgI	GTGCAG	1 cut(s)	170
BshFI	GGCC	1 cut(s)	134
BsmAI	GTCTC	1 cut(s)	16
BsnI	GGCC	1 cut(s)	134
BspANI	GGCC	1 cut(s)	134
BspLI	GGNNCC	2 cut(s)	115, 135
BspMAI	CTGCAG	1 cut(s)	129
BsrDI	GCAATG	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	19
BstDEI	CTNAG	1 cut(s)	57
BstMAI	GTCTC	1 cut(s)	16
BstSFI	CTRYAG	1 cut(s)	125
BstV1I	GCAGC	1 cut(s)	163
BsuRI	GGCC	1 cut(s)	134
Cac8I	GCNNGC	1 cut(s)	19
Cfr13I	GGNCC	1 cut(s)	133
CviJI	RGCY	2 cut(s)	48, 134
CviKI_1	RGCY	2 cut(s)	48, 134
DdeI	CTNAG	1 cut(s)	57
EcoO109I	RGGNCCY	1 cut(s)	133
FblI	GTMKAC	1 cut(s)	41
Fnu4HI	GCNGC	1 cut(s)	152
Fsp4HI	GCNGC	1 cut(s)	152
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	1 cut(s)	152
HaeIII	GGCC	1 cut(s)	134
HinfI	GANTC	1 cut(s)	83
Hpy166II	GTNNAC	1 cut(s)	42
Hpy188I	TCNGA	1 cut(s)	64
Hpy8I	GTNNAC	1 cut(s)	42
HpyAV	CCTTC	1 cut(s)	124
HpyCH4V	TGCA	2 cut(s)	127, 151
HpyF3I	CTNAG	1 cut(s)	57
LpnPI	CCDG	5 cut(s)	3, 72, 111, 140, 150
Lsp1109I	GCAGC	1 cut(s)	163
MaeI	CTAG	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	3
MboII	GAAGA	1 cut(s)	86
MluCI	AATT	1 cut(s)	160
MnlI	CCTC	2 cut(s)	104, 127
NlaIV	GGNNCC	2 cut(s)	115, 135
PfeI	GAWTC	1 cut(s)	83
PkrI	GCNGC	1 cut(s)	153
PspN4I	GGNNCC	2 cut(s)	115, 135
PspPI	GGNCC	1 cut(s)	133
PstI	CTGCAG	1 cut(s)	129
SatI	GCNGC	1 cut(s)	152
Sau96I	GGNCC	1 cut(s)	133
SetI	ASST	3 cut(s)	28, 50, 119
SfcI	CTRYAG	1 cut(s)	125
SgeI	CNNG	9 cut(s)	20, 30, 57, 61, 99, 110, 149, 155, 167
Sse9I	AATT	1 cut(s)	160
SspMI	CTAG	1 cut(s)	45
TasI	AATT	1 cut(s)	160
TfiI	GAWTC	1 cut(s)	83
TseI	GCWGC	1 cut(s)	151
TspDTI	ATGAA	1 cut(s)	119
TspGWI	ACGGA	1 cut(s)	123
XapI	RAATTY	1 cut(s)	160
XmiI	GTMKAC	1 cut(s)	41
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.