Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008148.1

Orthogroup ID

OG0013715

Physical Location & Seq

Genomic Coordinates Forward (+)

225590 .. 229101

Gene Structure 3512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008148.1_g000053.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

atggaagccgaagctcaagaatggagcccccaagattcgagaggcaccacacgaggctacaagtctctcgtgggggggaagaagaaggaggtgaagaaagaaaccggcctcggtttgaccaagaagaaggatgagaattttggggagtggtattcggaggttgttgttttcggtgagatgattgaatactatgacatatctggttgttatattttgaggccatggacaatggcaatatgggagaccatgcaagcattcttcgatgcagaaataaagaaaatgaagattaaaaattgctactttcctttgttcgtctcccctgctgttctggaaaaagagaaggatcatatagagggttttgctccagagcatttcaacccccaaggtgtgcctatcaaatcactgccgctgactgattatccatttagcccaagatgggaagcatcgctaatggctgaacgaatatgggactttttggccgatgaagccttgatcttcaagaagtactgcaacgagcattggcgatttgaaccatttgatttctgctaccatgtctggtgtgacttgctgtttgagaaaaagtttgatgcatcggttttcaaaatagcttgcgcccaggctgcaaagaataaatgggtggactttggaaagcaactagtgaccccaggcagagtgatcccagaaagagtaatcccaggaattgagctggtgcggttagcatcatggtgtttgcagtatgaacctcatgagaggccaaatgccaagtctcttgtgactgcccttgttcttcttcaaaaggaaacttcgttgaagcgaaaagatattataccagcttttgtttcatgtataggtagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004827 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006433 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055044 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon ProRS-C_1 tRNA-synt_2b

Protein Analysis

285

Amino Acids

33.05

Weight (kDa)

6.55

Isoelectric Point (pI)

40.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013715)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g23851
rosa_chinensis	RchiOBHm_Chr1g0315431 RchiOBHm_Chr1g0324411 RchiOBHm_Chr1g0369591 RchiOBHm_Chr1g0381171 RchiOBHm_Chr2g0121141 RchiOBHm_Chr4g0394831 RchiOBHm_Chr4g0410241
rosa_multiflora	Rmu_sc0002669.1_g000014 Rmu_sc0008148.1_g000053 Rmu_sc0015525.1_g000009
rosa_roxburghii	Rroxscaffold_4G00287500
rosa_samantha	Rh2CG617500 Rh2DG665300 Rh3DG296700 Rh5AG529800 Rh5CG208600
rosa_wichuraiana	Rw2G052700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	44
AciI	CCGC	2 cut(s)	407, 712
AclWI	GGATC	2 cut(s)	351, 670
AcoI	YGGCCR	1 cut(s)	477
AcsI	RAATTY	1 cut(s)	136
AfaI	GTAC	1 cut(s)	506
AfiI	CCNNNNNNNGG	1 cut(s)	436
AgsI	TTSAA	7 cut(s)	185, 376, 499, 530, 601, 794, 811
AhlI	ACTAGT	1 cut(s)	655
AjnI	CCWGG	3 cut(s)	615, 664, 694
AluBI	AGCT	4 cut(s)	14, 608, 706, 833
AluI	AGCT	4 cut(s)	14, 608, 706, 833
Alw26I	GTCTC	4 cut(s)	69, 236, 319, 771
AlwI	GGATC	2 cut(s)	351, 670
AoxI	GGCC	4 cut(s)	106, 218, 477, 752
ApeKI	GCWGC	1 cut(s)	620
ApoI	RAATTY	1 cut(s)	136
ArsI	GACNNNNNNTTYG	4 cut(s)	554, 586, 749, 781
AspLEI	GCGC	1 cut(s)	614
AsuHPI	GGTGA	2 cut(s)	103, 185
BanI	GGYRCC	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	29
BauI	CACGAG	2 cut(s)	51, 68
BbvI	GCAGC	1 cut(s)	607
BccI	CCATC	1 cut(s)	429
BciT130I	CCWGG	3 cut(s)	617, 666, 696
BcoDI	GTCTC	4 cut(s)	69, 236, 319, 771
BcuI	ACTAGT	1 cut(s)	655
BfaI	CTAG	1 cut(s)	656
BisI	GCNGC	2 cut(s)	407, 621
BlsI	GCNGC	2 cut(s)	408, 622
BmcAI	AGTACT	1 cut(s)	506
Bme1390I	CCNGG	3 cut(s)	617, 666, 696
BmiI	GGNNCC	2 cut(s)	26, 46
BmrFI	CCNGG	3 cut(s)	617, 666, 696
BmsI	GCATC	5 cut(s)	253, 452, 577, 599, 728
BpmI	CTGGAG	1 cut(s)	348
BsaI	GGTCTC	1 cut(s)	236
BsaJI	CCNNGG	6 cut(s)	109, 221, 382, 615, 664, 694
Bsc4I	CCNNNNNNNGG	1 cut(s)	436
Bse118I	RCCGGY	1 cut(s)	104
BseBI	CCWGG	3 cut(s)	617, 666, 696
BseDI	CCNNGG	6 cut(s)	109, 221, 382, 615, 664, 694
BseGI	GGATG	1 cut(s)	136
BseLI	CCNNNNNNNGG	1 cut(s)	436
BseXI	GCAGC	1 cut(s)	607
BshFI	GGCC	4 cut(s)	108, 220, 479, 754
BshNI	GGYRCC	1 cut(s)	44
BsiSI	CCGG	1 cut(s)	105
BslFI	GGGAC	1 cut(s)	482
BslI	CCNNNNNNNGG	1 cut(s)	436
BsmAI	GTCTC	4 cut(s)	69, 236, 319, 771
BsmBI	CGTCTC	1 cut(s)	319
BsmFI	GGGAC	1 cut(s)	482
BsmI	GAATGC	1 cut(s)	254
BsnI	GGCC	4 cut(s)	108, 220, 479, 754
Bso31I	GGTCTC	1 cut(s)	236
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	3 cut(s)	343, 492, 675
Bsp19I	CCATGG	1 cut(s)	221
BspACI	CCGC	2 cut(s)	407, 712
BspANI	GGCC	4 cut(s)	108, 220, 479, 754
BspHI	TCATGA	1 cut(s)	745
BspLI	GGNNCC	2 cut(s)	26, 46
BspPI	GGATC	2 cut(s)	351, 670
BspT107I	GGYRCC	1 cut(s)	44
BspTNI	GGTCTC	1 cut(s)	236
BsrFI	RCCGGY	1 cut(s)	104
BssAI	RCCGGY	1 cut(s)	104
BssECI	CCNNGG	6 cut(s)	109, 221, 382, 615, 664, 694
BssMI	GATC	3 cut(s)	343, 492, 675
BssSI	CACGAG	2 cut(s)	51, 68
BssT1I	CCWWGG	2 cut(s)	221, 382
Bst2BI	CACGAG	2 cut(s)	51, 68
Bst2UI	CCWGG	3 cut(s)	617, 666, 696
BstC8I	GCNNGC	2 cut(s)	252, 610
BstDSI	CCRYGG	1 cut(s)	221
BstF5I	GGATG	1 cut(s)	136
BstHHI	GCGC	1 cut(s)	614
BstKTI	GATC	3 cut(s)	346, 495, 678
BstMAI	GTCTC	4 cut(s)	69, 236, 319, 771
BstMBI	GATC	3 cut(s)	343, 492, 675
BstMWI	GCNNNNNNNGC	2 cut(s)	485, 620
BstNI	CCWGG	3 cut(s)	617, 666, 696
BstSCI	CCNGG	3 cut(s)	615, 664, 694
BstV1I	GCAGC	1 cut(s)	607
BsuRI	GGCC	4 cut(s)	108, 220, 479, 754
BtgI	CCRYGG	1 cut(s)	221
BtgZI	GCGATG	1 cut(s)	429
BtsCI	GGATG	1 cut(s)	136
BtsI	GCAGTG	1 cut(s)	401
BtsIMutI	CAGTG	1 cut(s)	401
Cac8I	GCNNGC	2 cut(s)	252, 610
CciI	TCATGA	1 cut(s)	745
CfoI	GCGC	1 cut(s)	614
Cfr10I	RCCGGY	1 cut(s)	104
Csp6I	GTAC	1 cut(s)	505
CviAII	CATG	6 cut(s)	222, 247, 551, 723, 746, 843
CviQI	GTAC	1 cut(s)	505
DpnI	GATC	3 cut(s)	345, 494, 677
DpnII	GATC	3 cut(s)	343, 492, 675
EaeI	YGGCCR	1 cut(s)	477
Eco130I	CCWWGG	2 cut(s)	221, 382
Eco24I	GRGCYC	1 cut(s)	29
Eco31I	GGTCTC	1 cut(s)	236
EcoRII	CCWGG	3 cut(s)	615, 664, 694
EcoT14I	CCWWGG	2 cut(s)	221, 382
EcoT22I	ATGCAT	1 cut(s)	592
EcoT38I	GRGCYC	1 cut(s)	29
ErhI	CCWWGG	2 cut(s)	221, 382
Esp3I	CGTCTC	1 cut(s)	319
FaeI	CATG	6 cut(s)	225, 250, 554, 726, 749, 846
FaqI	GGGAC	1 cut(s)	482
FatI	CATG	6 cut(s)	221, 246, 550, 722, 745, 842
Fnu4HI	GCNGC	2 cut(s)	407, 621
FokI	GGATG	1 cut(s)	143
FriOI	GRGCYC	1 cut(s)	29
Fsp4HI	GCNGC	2 cut(s)	407, 621
FspBI	CTAG	1 cut(s)	656
GlaI	GCGC	1 cut(s)	613
GluI	GCNGC	2 cut(s)	407, 621
GsuI	CTGGAG	1 cut(s)	348
HaeIII	GGCC	4 cut(s)	108, 220, 479, 754
HapII	CCGG	1 cut(s)	105
HhaI	GCGC	1 cut(s)	614
Hin1II	CATG	6 cut(s)	225, 250, 554, 726, 749, 846
Hin6I	GCGC	1 cut(s)	612
HinP1I	GCGC	1 cut(s)	612
HinfI	GANTC	1 cut(s)	35
HpaII	CCGG	1 cut(s)	105
HphI	GGTGA	2 cut(s)	103, 185
Hpy166II	GTNNAC	1 cut(s)	640
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	6 cut(s)	17, 39, 329, 365, 499, 746
Hpy8I	GTNNAC	1 cut(s)	640
HpyAV	CCTTC	3 cut(s)	79, 121, 334
HpyCH4V	TGCA	6 cut(s)	250, 266, 510, 590, 623, 733
HpyF10VI	GCNNNNNNNGC	2 cut(s)	485, 620
Hsp92II	CATG	6 cut(s)	225, 250, 554, 726, 749, 846
HspAI	GCGC	1 cut(s)	612
Kzo9I	GATC	3 cut(s)	343, 492, 675
LmnI	GCTCC	2 cut(s)	24, 367
Lsp1109I	GCAGC	1 cut(s)	607
LweI	GCATC	5 cut(s)	253, 452, 577, 599, 728
MaeI	CTAG	1 cut(s)	656
MaeIII	GTNAC	3 cut(s)	560, 658, 772
MalI	GATC	3 cut(s)	345, 494, 677
MboI	GATC	3 cut(s)	343, 492, 675
MboII	GAAGA	9 cut(s)	91, 94, 106, 136, 250, 295, 487, 779, 782
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	3 cut(s)	136, 292, 699
MnlI	CCTC	9 cut(s)	35, 47, 82, 119, 151, 210, 346, 744, 753
Mph1103I	ATGCAT	1 cut(s)	592
MseI	TTAA	1 cut(s)	288
MslI	CAYNNNNRTG	1 cut(s)	724
MspA1I	CMGCKG	1 cut(s)	409
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	3 cut(s)	617, 666, 696
Mva1269I	GAATGC	1 cut(s)	254
MvaI	CCWGG	3 cut(s)	617, 666, 696
MwoI	GCNNNNNNNGC	2 cut(s)	485, 620
NcoI	CCATGG	1 cut(s)	221
NdeII	GATC	3 cut(s)	343, 492, 675
NlaIII	CATG	6 cut(s)	225, 250, 554, 726, 749, 846
NlaIV	GGNNCC	2 cut(s)	26, 46
NmuCI	GTSAC	3 cut(s)	560, 658, 772
NsiI	ATGCAT	1 cut(s)	592
PagI	TCATGA	1 cut(s)	745
PctI	GAATGC	1 cut(s)	254
PfeI	GAWTC	1 cut(s)	35
PkrI	GCNGC	2 cut(s)	408, 622
Psp6I	CCWGG	3 cut(s)	615, 664, 694
PspGI	CCWGG	3 cut(s)	615, 664, 694
PspN4I	GGNNCC	2 cut(s)	26, 46
RsaI	GTAC	1 cut(s)	506
RsaNI	GTAC	1 cut(s)	505
RseI	CAYNNNNRTG	1 cut(s)	724
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	2 cut(s)	407, 621
Sau3AI	GATC	3 cut(s)	343, 492, 675
ScaI	AGTACT	1 cut(s)	506
ScrFI	CCNGG	3 cut(s)	617, 666, 696
SduI	GDGCHC	1 cut(s)	29
SetI	ASST	9 cut(s)	16, 93, 162, 388, 610, 708, 745, 835, 853
SfaNI	GCATC	5 cut(s)	253, 452, 577, 599, 728
SmiMI	CAYNNNNRTG	1 cut(s)	724
SmlI	CTYRAG	1 cut(s)	15
SmoI	CTYRAG	1 cut(s)	15
SpeI	ACTAGT	1 cut(s)	655
Sse9I	AATT	3 cut(s)	136, 292, 699
SsiI	CCGC	2 cut(s)	407, 712
SspMI	CTAG	1 cut(s)	656
StyD4I	CCNGG	3 cut(s)	615, 664, 694
StyI	CCWWGG	2 cut(s)	221, 382
TaqI	TCGA	2 cut(s)	38, 261
TasI	AATT	3 cut(s)	136, 292, 699
TatI	WGTACW	1 cut(s)	504
TauI	GCSGC	1 cut(s)	409
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TscAI	CASTG	1 cut(s)	408
TseFI	GTSAC	3 cut(s)	560, 658, 772
TseI	GCWGC	1 cut(s)	620
Tsp45I	GTSAC	3 cut(s)	560, 658, 772
TspDTI	ATGAA	4 cut(s)	296, 498, 753, 831
TspRI	CASTG	1 cut(s)	408
XapI	RAATTY	1 cut(s)	136
XspI	CTAG	1 cut(s)	656
ZrmI	AGTACT	1 cut(s)	506
Zsp2I	ATGCAT	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.