Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013715

Physical Location & Seq

Genomic Coordinates Forward (+)

59372955 .. 59374990

Gene Structure 2036 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59382

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGAACGGAGGAACCTCAGAACTGCGGAAGGCCCCTGAACAAGATGTGAGCAGGGAATTCCTTTACGTTTCAAATTTTCAATTTACTTTAGAAGAGACTCTTGATTCCTTTCAGAAATCGGTATGCGAAGACATGAGGAACCTTCATATAGAAATTTTAAGACAATTCAACATGCAAGCGATGGAAATGTCAACTGTGACGAGTAAAATTCTAGCAAACCAAGCTGAGGTCTGGAAGAAGTTAATCTCTCTGGAAAGAAAACCAGCAGCTTCTGCAATTTTTTTAGCACTGGTGAAGATTGTATTTAGTGTTAATGATTTGTTGTGCGGATTGGAATATGTCTGCTGTTTGTGTTGTACAATTTGCCTTTCATTTATGGGCTTTTGTTCTCTAGGTACATTTGAATTGCTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000242 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0000922 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005813 GO:0005814 GO:0005815 GO:0005819 GO:0005828 GO:0005856 GO:0005874 GO:0005876 GO:0005929 GO:0007049 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0009553 GO:0009555 GO:0009987 GO:0010564 GO:0015630 GO:0016043 GO:0022402 GO:0022607 GO:0032465 GO:0032467 GO:0032501 GO:0032502 GO:0032506 GO:0032886 GO:0033036 GO:0033043 GO:0033365 GO:0034613 GO:0036064 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044380 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044450 GO:0044463 GO:0044464 GO:0045787 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051128 GO:0051179 GO:0051301 GO:0051302 GO:0051493 GO:0051641 GO:0051726 GO:0051781 GO:0060236 GO:0061640 GO:0065007 GO:0070507 GO:0070727 GO:0071539 GO:0071840 GO:0072698 GO:0090068 GO:0090224 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0120025 GO:0120038 GO:1902410 GO:1903047 GO:1905508 GO:2000694

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

138

Amino Acids

15.66

Weight (kDa)

5.19

Isoelectric Point (pI)

39.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013715)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g23851
rosa_chinensis	RchiOBHm_Chr1g0315431 RchiOBHm_Chr1g0324411 RchiOBHm_Chr1g0369591 RchiOBHm_Chr1g0381171 RchiOBHm_Chr2g0121141 RchiOBHm_Chr4g0394831 RchiOBHm_Chr4g0410241
rosa_multiflora	Rmu_sc0002669.1_g000014 Rmu_sc0008148.1_g000053 Rmu_sc0015525.1_g000009
rosa_roxburghii	Rroxscaffold_4G00287500
rosa_samantha	Rh2CG617500 Rh2DG665300 Rh3DG296700 Rh5AG529800 Rh5CG208600
rosa_wichuraiana	Rw2G052700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	25, 327
AcsI	RAATTY	4 cut(s)	56, 73, 153, 207
AfaI	GTAC	2 cut(s)	358, 397
AfiI	CCNNNNNNNGG	1 cut(s)	226
AgsI	TTSAA	4 cut(s)	72, 80, 169, 404
AluBI	AGCT	2 cut(s)	224, 269
AluI	AGCT	2 cut(s)	224, 269
Alw26I	GTCTC	1 cut(s)	89
AlwNI	CAGNNNCTG	1 cut(s)	272
AoxI	GGCC	1 cut(s)	30
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	4 cut(s)	56, 73, 153, 207
AspS9I	GGNCC	1 cut(s)	31
AsuHPI	GGTGA	1 cut(s)	304
BbsI	GAAGAC	1 cut(s)	135
BbvCI	CCTCAGC	1 cut(s)	225
BbvI	GCAGC	1 cut(s)	278
BccI	CCATC	1 cut(s)	175
BcoDI	GTCTC	1 cut(s)	89
BfaI	CTAG	2 cut(s)	212, 392
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	31
BmiI	GGNNCC	3 cut(s)	13, 33, 140
BpiI	GAAGAC	1 cut(s)	135
Bpu10I	CCTNAGC	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
Bse1I	ACTGG	1 cut(s)	294
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseMII	CTCAG	2 cut(s)	30, 216
BseNI	ACTGG	1 cut(s)	294
BseXI	GCAGC	1 cut(s)	278
BshFI	GGCC	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmAI	GTCTC	1 cut(s)	89
BsnI	GGCC	1 cut(s)	32
Bsp1407I	TGTACA	1 cut(s)	356
BspACI	CCGC	2 cut(s)	25, 327
BspANI	GGCC	1 cut(s)	32
BspCNI	CTCAG	2 cut(s)	29, 217
BspLI	GGNNCC	3 cut(s)	13, 33, 140
BsrGI	TGTACA	1 cut(s)	356
BsrI	ACTGG	1 cut(s)	294
Bst4CI	ACNGT	1 cut(s)	196
Bst6I	CTCTTC	1 cut(s)	87
BstAPI	GCANNNNNTGC	1 cut(s)	272
BstAUI	TGTACA	1 cut(s)	356
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	2 cut(s)	16, 225
BstMAI	GTCTC	1 cut(s)	89
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 272
BstNSI	RCATGY	1 cut(s)	175
BstV1I	GCAGC	1 cut(s)	278
BstV2I	GAAGAC	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	32
BtgZI	GCGATG	1 cut(s)	194
BtsIMutI	CAGTG	1 cut(s)	287
Cac8I	GCNNGC	1 cut(s)	177
CaiI	CAGNNNCTG	1 cut(s)	272
Cfr13I	GGNCC	1 cut(s)	31
Csp6I	GTAC	2 cut(s)	357, 396
CviAII	CATG	2 cut(s)	133, 172
CviJI	RGCY	4 cut(s)	32, 224, 269, 381
CviKI_1	RGCY	4 cut(s)	32, 224, 269, 381
CviQI	GTAC	2 cut(s)	357, 396
DdeI	CTNAG	2 cut(s)	16, 225
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
EcoO109I	RGGNCCY	1 cut(s)	31
EcoRI	GAATTC	1 cut(s)	56
FaeI	CATG	2 cut(s)	136, 175
FaiI	YATR	7 cut(s)	124, 134, 147, 149, 173, 339, 377
FalI	AAGNNNNNCTT	2 cut(s)	84, 116
FatI	CATG	2 cut(s)	132, 171
Fnu4HI	GCNGC	1 cut(s)	267
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	2 cut(s)	212, 392
GluI	GCNGC	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	32
Hin1II	CATG	2 cut(s)	136, 175
HincII	GTYRAC	1 cut(s)	192
HindII	GTYRAC	1 cut(s)	192
HinfI	GANTC	2 cut(s)	97, 104
HphI	GGTGA	1 cut(s)	304
Hpy166II	GTNNAC	1 cut(s)	192
Hpy188I	TCNGA	2 cut(s)	19, 114
Hpy188III	TCNNGA	3 cut(s)	101, 232, 251
Hpy8I	GTNNAC	1 cut(s)	192
HpyAV	CCTTC	2 cut(s)	22, 152
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	2 cut(s)	175, 275
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 272
HpyF3I	CTNAG	2 cut(s)	16, 225
HpySE526I	ACGT	1 cut(s)	66
Hsp92II	CATG	2 cut(s)	136, 175
LpnPI	CCDG	6 cut(s)	37, 48, 217, 236, 275, 276
Lsp1109I	GCAGC	1 cut(s)	278
MaeI	CTAG	2 cut(s)	212, 392
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	1 cut(s)	196
MboII	GAAGA	4 cut(s)	104, 140, 247, 307
MluCI	AATT	9 cut(s)	56, 73, 80, 153, 164, 207, 276, 360, 404
MlyI	GAGTC	1 cut(s)	91
MnlI	CCTC	3 cut(s)	25, 129, 220
MseI	TTAA	3 cut(s)	158, 242, 312
MwoI	GCNNNNNNNGC	2 cut(s)	221, 272
NlaIII	CATG	2 cut(s)	136, 175
NlaIV	GGNNCC	3 cut(s)	13, 33, 140
NmuCI	GTSAC	1 cut(s)	196
NspI	RCATGY	1 cut(s)	175
PfeI	GAWTC	1 cut(s)	104
PkrI	GCNGC	1 cut(s)	268
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PspN4I	GGNNCC	3 cut(s)	13, 33, 140
PspPI	GGNCC	1 cut(s)	31
PstNI	CAGNNNCTG	1 cut(s)	272
RsaI	GTAC	2 cut(s)	358, 397
RsaNI	GTAC	2 cut(s)	357, 396
SaqAI	TTAA	3 cut(s)	158, 242, 312
SatI	GCNGC	1 cut(s)	267
Sau96I	GGNCC	1 cut(s)	31
SchI	GAGTC	1 cut(s)	91
SetI	ASST	7 cut(s)	17, 69, 144, 226, 231, 271, 397
Sse9I	AATT	9 cut(s)	56, 73, 80, 153, 164, 207, 276, 360, 404
SsiI	CCGC	2 cut(s)	25, 327
SspMI	CTAG	2 cut(s)	212, 392
TaaI	ACNGT	1 cut(s)	196
TaiI	ACGT	1 cut(s)	69
TasI	AATT	9 cut(s)	56, 73, 80, 153, 164, 207, 276, 360, 404
TatI	WGTACW	1 cut(s)	356
TfiI	GAWTC	1 cut(s)	104
Tru1I	TTAA	3 cut(s)	158, 242, 312
Tru9I	TTAA	3 cut(s)	158, 242, 312
TscAI	CASTG	1 cut(s)	294
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	3 cut(s)	17, 134, 360
TspGWI	ACGGA	1 cut(s)	21
TspRI	CASTG	1 cut(s)	294
XapI	RAATTY	4 cut(s)	56, 73, 153, 207
XceI	RCATGY	1 cut(s)	175
XspI	CTAG	2 cut(s)	212, 392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.