Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013715

Physical Location & Seq

Genomic Coordinates Reverse (-)

34041520 .. 34042449

Gene Structure 930 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49370

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGAAAATATTGAAGTTCAAACCAGATGTTGTGATTACAGAAAAGGGGCTCAGTGACCTGGCATGCCATTATCTGAGCAAGGCCGGTGTTACTGCAATTAGGAGGTTGAGAAAAACAGATAATAACAGAATTGCCAAGGCTTGTGGGGCAGTTATTGTCAACAGACCCGATGAACTGCAAGAATCTGATATTGGTACTGGGGCTGGATTATTTGAGGTTAAAAAAATTGGAGATGAGTTCTTTACATTCATCGTTGATTGCAAAGATCCCAAGGCATGTACAGTACTCTTAAGAGGTCCGAGTAAGGATATGTTAAACGAAGTGGAAAGAAATTTACAGGATGCCATGGTAGTAGCAAGAAATATCCTGAAGAATCCAAAACTTGTTCCTGGTGGTGGTGCTGCAGAGTTAACTGTTTCTGCTACACTGAAGCAAAAGAATCCAAAACTTGTTCCTCGTGAGAGGCCAAATGCCAAGTCTCTTGTGACTGCCCTTGTTCTTCTTCAAAAGGAAACTTCGTTGAAGCGTAAAGATATTATATCAGCTTTTGTTTCATGTATAGGTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0005975 GO:0006457 GO:0006458 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006884 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008361 GO:0009311 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009826 GO:0009987 GO:0009992 GO:0010033 GO:0014070 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019725 GO:0023052 GO:0030104 GO:0032502 GO:0032535 GO:0032989 GO:0032991 GO:0036211 GO:0040007 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043412 GO:0044183 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046677 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051716 GO:0055082 GO:0060560 GO:0061077 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090066 GO:0101031 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

189

Amino Acids

20.61

Weight (kDa)

9.58

Isoelectric Point (pI)

42.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	2 - 164	9.8e-45	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Orthologous Genes (Group: OG0013715)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g23851
rosa_chinensis	RchiOBHm_Chr1g0315431 RchiOBHm_Chr1g0324411 RchiOBHm_Chr1g0369591 RchiOBHm_Chr1g0381171 RchiOBHm_Chr2g0121141 RchiOBHm_Chr4g0394831 RchiOBHm_Chr4g0410241
rosa_multiflora	Rmu_sc0002669.1_g000014 Rmu_sc0008148.1_g000053 Rmu_sc0015525.1_g000009
rosa_roxburghii	Rroxscaffold_4G00287500
rosa_samantha	Rh2CG617500 Rh2DG665300 Rh3DG296700 Rh5AG529800 Rh5CG208600
rosa_wichuraiana	Rw2G052700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	260
AcsI	RAATTY	1 cut(s)	331
AcuI	CTGAAG	2 cut(s)	389, 449
AfaI	GTAC	3 cut(s)	196, 280, 285
AfiI	CCNNNNNNNGG	1 cut(s)	395
AflII	CTTAAG	1 cut(s)	289
AgsI	TTSAA	4 cut(s)	13, 19, 506, 523
AjnI	CCWGG	2 cut(s)	57, 388
AjuI	GAANNNNNNNTTGG	2 cut(s)	174, 206
AluBI	AGCT	1 cut(s)	545
AluI	AGCT	1 cut(s)	545
Alw26I	GTCTC	1 cut(s)	483
AlwI	GGATC	1 cut(s)	260
AoxI	GGCC	2 cut(s)	81, 464
ApeKI	GCWGC	1 cut(s)	401
ApoI	RAATTY	1 cut(s)	331
ArsI	GACNNNNNNTTYG	2 cut(s)	461, 493
AspS9I	GGNCC	1 cut(s)	296
AvaII	GGWCC	1 cut(s)	296
BanII	GRGCYC	1 cut(s)	51
BauI	CACGAG	1 cut(s)	456
BbvI	GCAGC	1 cut(s)	388
BciT130I	CCWGG	2 cut(s)	59, 390
BcoDI	GTCTC	1 cut(s)	483
BfmI	CTRYAG	1 cut(s)	402
BfrI	CTTAAG	1 cut(s)	289
BisI	GCNGC	1 cut(s)	402
BlsI	GCNGC	1 cut(s)	403
BmcAI	AGTACT	1 cut(s)	285
Bme1390I	CCNGG	2 cut(s)	59, 390
Bme18I	GGWCC	1 cut(s)	296
BmgT120I	GGNCC	1 cut(s)	296
BmrFI	CCNGG	2 cut(s)	59, 390
BmrI	ACTGGG	1 cut(s)	207
BmsI	GCATC	1 cut(s)	331
BmuI	ACTGGG	1 cut(s)	207
BsaJI	CCNNGG	3 cut(s)	135, 270, 345
Bsc4I	CCNNNNNNNGG	1 cut(s)	395
Bse118I	RCCGGY	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	202
BseBI	CCWGG	2 cut(s)	59, 390
BseDI	CCNNGG	3 cut(s)	135, 270, 345
BseGI	GGATG	1 cut(s)	346
BseLI	CCNNNNNNNGG	1 cut(s)	395
BseMII	CTCAG	2 cut(s)	64, 65
BseNI	ACTGG	1 cut(s)	202
BseXI	GCAGC	1 cut(s)	388
BshFI	GGCC	2 cut(s)	83, 466
BsiSI	CCGG	1 cut(s)	84
BslI	CCNNNNNNNGG	1 cut(s)	395
BsmAI	GTCTC	1 cut(s)	483
BsnI	GGCC	2 cut(s)	83, 466
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp1407I	TGTACA	1 cut(s)	278
Bsp143I	GATC	1 cut(s)	265
Bsp19I	CCATGG	1 cut(s)	345
BspANI	GGCC	2 cut(s)	83, 466
BspCNI	CTCAG	2 cut(s)	63, 66
BspMAI	CTGCAG	1 cut(s)	406
BspPI	GGATC	1 cut(s)	260
BspTI	CTTAAG	1 cut(s)	289
BsrFI	RCCGGY	1 cut(s)	83
BsrGI	TGTACA	1 cut(s)	278
BsrI	ACTGG	1 cut(s)	202
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	3 cut(s)	135, 270, 345
BssMI	GATC	1 cut(s)	265
BssSI	CACGAG	1 cut(s)	456
BssT1I	CCWWGG	3 cut(s)	135, 270, 345
Bst2BI	CACGAG	1 cut(s)	456
Bst2UI	CCWGG	2 cut(s)	59, 390
Bst4CI	ACNGT	2 cut(s)	283, 415
BstAFI	CTTAAG	1 cut(s)	289
BstAUI	TGTACA	1 cut(s)	278
BstC8I	GCNNGC	1 cut(s)	64
BstDEI	CTNAG	2 cut(s)	50, 74
BstDSI	CCRYGG	1 cut(s)	345
BstF5I	GGATG	1 cut(s)	346
BstKTI	GATC	1 cut(s)	268
BstMAI	GTCTC	1 cut(s)	483
BstMBI	GATC	1 cut(s)	265
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstNI	CCWGG	2 cut(s)	59, 390
BstNSI	RCATGY	2 cut(s)	66, 279
BstSCI	CCNGG	2 cut(s)	57, 388
BstSFI	CTRYAG	1 cut(s)	402
BstV1I	GCAGC	1 cut(s)	388
BstX2I	RGATCY	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	265
BsuRI	GGCC	2 cut(s)	83, 466
BtgI	CCRYGG	1 cut(s)	345
BtsCI	GGATG	1 cut(s)	346
BtsIMutI	CAGTG	2 cut(s)	58, 425
Cac8I	GCNNGC	1 cut(s)	64
Cfr10I	RCCGGY	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	296
Csp6I	GTAC	3 cut(s)	195, 279, 284
CspCI	CAANNNNNGTGG	2 cut(s)	124, 159
CviAII	CATG	4 cut(s)	63, 276, 346, 555
CviJI	RGCY	6 cut(s)	49, 83, 140, 203, 466, 545
CviKI_1	RGCY	6 cut(s)	49, 83, 140, 203, 466, 545
CviQI	GTAC	3 cut(s)	195, 279, 284
DdeI	CTNAG	2 cut(s)	50, 74
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
Eco130I	CCWWGG	3 cut(s)	135, 270, 345
Eco24I	GRGCYC	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	296
Eco57I	CTGAAG	2 cut(s)	389, 449
EcoRII	CCWGG	2 cut(s)	57, 388
EcoT14I	CCWWGG	3 cut(s)	135, 270, 345
EcoT38I	GRGCYC	1 cut(s)	51
ErhI	CCWWGG	3 cut(s)	135, 270, 345
FaeI	CATG	4 cut(s)	66, 279, 349, 558
FaiI	YATR	7 cut(s)	64, 277, 311, 347, 539, 556, 560
FatI	CATG	4 cut(s)	62, 275, 345, 554
Fnu4HI	GCNGC	1 cut(s)	402
FokI	GGATG	1 cut(s)	353
FriOI	GRGCYC	1 cut(s)	51
Fsp4HI	GCNGC	1 cut(s)	402
GluI	GCNGC	1 cut(s)	402
HaeIII	GGCC	2 cut(s)	83, 466
HapII	CCGG	1 cut(s)	84
Hin1II	CATG	4 cut(s)	66, 279, 349, 558
HincII	GTYRAC	2 cut(s)	160, 411
HindII	GTYRAC	2 cut(s)	160, 411
HinfI	GANTC	3 cut(s)	182, 373, 439
HpaI	GTTAAC	1 cut(s)	411
HpaII	CCGG	1 cut(s)	84
Hpy166II	GTNNAC	2 cut(s)	160, 411
Hpy188I	TCNGA	3 cut(s)	75, 187, 300
Hpy188III	TCNNGA	2 cut(s)	367, 458
Hpy8I	GTNNAC	2 cut(s)	160, 411
HpyCH4III	ACNGT	2 cut(s)	283, 415
HpyCH4V	TGCA	4 cut(s)	95, 178, 261, 404
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	2 cut(s)	50, 74
Hsp92II	CATG	4 cut(s)	66, 279, 349, 558
KspAI	GTTAAC	1 cut(s)	411
Kzo9I	GATC	1 cut(s)	265
Lsp1109I	GCAGC	1 cut(s)	388
LweI	GCATC	1 cut(s)	331
MaeIII	GTNAC	3 cut(s)	53, 88, 484
MalI	GATC	1 cut(s)	267
MboI	GATC	1 cut(s)	265
MboII	GAAGA	3 cut(s)	382, 491, 494
MflI	RGATCY	1 cut(s)	265
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	4 cut(s)	96, 129, 225, 331
MnlI	CCTC	5 cut(s)	96, 208, 287, 456, 465
MseI	TTAA	4 cut(s)	219, 290, 314, 410
MspCI	CTTAAG	1 cut(s)	289
MspI	CCGG	1 cut(s)	84
MspR9I	CCNGG	2 cut(s)	59, 390
MvaI	CCWGG	2 cut(s)	59, 390
MwoI	GCNNNNNNNGC	1 cut(s)	146
NcoI	CCATGG	1 cut(s)	345
NdeII	GATC	1 cut(s)	265
NlaIII	CATG	4 cut(s)	66, 279, 349, 558
NmuCI	GTSAC	2 cut(s)	53, 484
NspI	RCATGY	2 cut(s)	66, 279
PaeI	GCATGC	1 cut(s)	66
PfeI	GAWTC	3 cut(s)	182, 373, 439
PkrI	GCNGC	1 cut(s)	403
Psp6I	CCWGG	2 cut(s)	57, 388
PspGI	CCWGG	2 cut(s)	57, 388
PspPI	GGNCC	1 cut(s)	296
PstI	CTGCAG	1 cut(s)	406
PsuI	RGATCY	1 cut(s)	265
RsaI	GTAC	3 cut(s)	196, 280, 285
RsaNI	GTAC	3 cut(s)	195, 279, 284
SaqAI	TTAA	4 cut(s)	219, 290, 314, 410
SatI	GCNGC	1 cut(s)	402
Sau3AI	GATC	1 cut(s)	265
Sau96I	GGNCC	1 cut(s)	296
ScaI	AGTACT	1 cut(s)	285
ScrFI	CCNGG	2 cut(s)	59, 390
SduI	GDGCHC	1 cut(s)	51
SetI	ASST	6 cut(s)	60, 107, 219, 298, 547, 565
SfaNI	GCATC	1 cut(s)	331
SfcI	CTRYAG	1 cut(s)	402
SinI	GGWCC	1 cut(s)	296
SmlI	CTYRAG	1 cut(s)	289
SmoI	CTYRAG	1 cut(s)	289
SphI	GCATGC	1 cut(s)	66
Sse9I	AATT	4 cut(s)	96, 129, 225, 331
SspI	AATATT	1 cut(s)	9
StyD4I	CCNGG	2 cut(s)	57, 388
StyI	CCWWGG	3 cut(s)	135, 270, 345
TaaI	ACNGT	2 cut(s)	283, 415
TasI	AATT	4 cut(s)	96, 129, 225, 331
TatI	WGTACW	2 cut(s)	278, 283
TfiI	GAWTC	3 cut(s)	182, 373, 439
Tru1I	TTAA	4 cut(s)	219, 290, 314, 410
Tru9I	TTAA	4 cut(s)	219, 290, 314, 410
TscAI	CASTG	2 cut(s)	58, 432
TseFI	GTSAC	2 cut(s)	53, 484
TseI	GCWGC	1 cut(s)	401
Tsp45I	GTSAC	2 cut(s)	53, 484
TspDTI	ATGAA	4 cut(s)	17, 186, 238, 543
TspRI	CASTG	2 cut(s)	58, 432
Vha464I	CTTAAG	1 cut(s)	289
VpaK11BI	GGWCC	1 cut(s)	296
XapI	RAATTY	1 cut(s)	331
XceI	RCATGY	2 cut(s)	66, 279
ZrmI	AGTACT	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.