WD40 repeats
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g23851 |
| rosa_chinensis | RchiOBHm_Chr1g0315431 RchiOBHm_Chr1g0324411 RchiOBHm_Chr1g0369591 RchiOBHm_Chr1g0381171 RchiOBHm_Chr2g0121141 RchiOBHm_Chr4g0394831 RchiOBHm_Chr4g0410241 |
| rosa_multiflora | Rmu_sc0002669.1_g000014 Rmu_sc0008148.1_g000053 Rmu_sc0015525.1_g000009 |
| rosa_roxburghii | Rroxscaffold_4G00287500 |
| rosa_samantha | Rh2CG617500 Rh2DG665300 Rh3DG296700 Rh5AG529800 Rh5CG208600 |
| rosa_wichuraiana | Rw2G052700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 183 |
| Acc16I | TGCGCA | 1 cut(s) | 48 |
| Acc36I | ACCTGC | 1 cut(s) | 183 |
| AcsI | RAATTY | 3 cut(s) | 58, 156, 208 |
| AfaI | GTAC | 2 cut(s) | 88, 126 |
| AgsI | TTSAA | 1 cut(s) | 83 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 189 |
| AluBI | AGCT | 1 cut(s) | 228 |
| AluI | AGCT | 1 cut(s) | 228 |
| Alw26I | GTCTC | 1 cut(s) | 176 |
| AoxI | GGCC | 1 cut(s) | 30 |
| ApeKI | GCWGC | 1 cut(s) | 49 |
| ApoI | RAATTY | 3 cut(s) | 58, 156, 208 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 99 |
| AspLEI | GCGC | 1 cut(s) | 49 |
| AspS9I | GGNCC | 1 cut(s) | 31 |
| BbvI | GCAGC | 1 cut(s) | 61 |
| BcoDI | GTCTC | 1 cut(s) | 176 |
| BfaI | CTAG | 1 cut(s) | 92 |
| BfmI | CTRYAG | 1 cut(s) | 23 |
| BfuAI | ACCTGC | 1 cut(s) | 183 |
| BisI | GCNGC | 1 cut(s) | 50 |
| BlsI | GCNGC | 1 cut(s) | 51 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 189 |
| BmgT120I | GGNCC | 1 cut(s) | 31 |
| BmiI | GGNNCC | 3 cut(s) | 13, 33, 143 |
| BmsI | GCATC | 1 cut(s) | 34 |
| BseXI | GCAGC | 1 cut(s) | 61 |
| BshFI | GGCC | 1 cut(s) | 32 |
| BsmAI | GTCTC | 1 cut(s) | 176 |
| BsmBI | CGTCTC | 1 cut(s) | 176 |
| BsnI | GGCC | 1 cut(s) | 32 |
| BspANI | GGCC | 1 cut(s) | 32 |
| BspLI | GGNNCC | 3 cut(s) | 13, 33, 143 |
| BspMAI | CTGCAG | 1 cut(s) | 27 |
| BspMI | ACCTGC | 1 cut(s) | 183 |
| Bst4CI | ACNGT | 2 cut(s) | 187, 198 |
| Bst6I | CTCTTC | 1 cut(s) | 90 |
| BstHHI | GCGC | 1 cut(s) | 49 |
| BstMAI | GTCTC | 1 cut(s) | 176 |
| BstSFI | CTRYAG | 1 cut(s) | 23 |
| BstV1I | GCAGC | 1 cut(s) | 61 |
| BsuRI | GGCC | 1 cut(s) | 32 |
| BveI | ACCTGC | 1 cut(s) | 183 |
| CfoI | GCGC | 1 cut(s) | 49 |
| Cfr13I | GGNCC | 1 cut(s) | 31 |
| Csp6I | GTAC | 2 cut(s) | 87, 125 |
| CviJI | RGCY | 2 cut(s) | 32, 228 |
| CviKI_1 | RGCY | 2 cut(s) | 32, 228 |
| CviQI | GTAC | 2 cut(s) | 87, 125 |
| DriI | GACNNNNNGTC | 1 cut(s) | 189 |
| Eam1104I | CTCTTC | 1 cut(s) | 90 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 189 |
| EarI | CTCTTC | 1 cut(s) | 90 |
| EcoO109I | RGGNCCY | 1 cut(s) | 31 |
| Esp3I | CGTCTC | 1 cut(s) | 176 |
| FaiI | YATR | 5 cut(s) | 137, 150, 152, 190, 201 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 87, 119 |
| Fnu4HI | GCNGC | 1 cut(s) | 50 |
| Fsp4HI | GCNGC | 1 cut(s) | 50 |
| FspBI | CTAG | 1 cut(s) | 92 |
| FspI | TGCGCA | 1 cut(s) | 48 |
| GlaI | GCGC | 1 cut(s) | 48 |
| GluI | GCNGC | 1 cut(s) | 50 |
| HaeIII | GGCC | 1 cut(s) | 32 |
| HhaI | GCGC | 1 cut(s) | 49 |
| Hin6I | GCGC | 1 cut(s) | 47 |
| HinP1I | GCGC | 1 cut(s) | 47 |
| HincII | GTYRAC | 1 cut(s) | 194 |
| HindII | GTYRAC | 1 cut(s) | 194 |
| HinfI | GANTC | 2 cut(s) | 100, 107 |
| Hpy166II | GTNNAC | 2 cut(s) | 127, 194 |
| Hpy188I | TCNGA | 1 cut(s) | 117 |
| Hpy188III | TCNNGA | 3 cut(s) | 73, 92, 104 |
| Hpy8I | GTNNAC | 2 cut(s) | 127, 194 |
| HpyAV | CCTTC | 2 cut(s) | 22, 155 |
| HpyCH4III | ACNGT | 2 cut(s) | 187, 198 |
| HpyCH4IV | ACGT | 1 cut(s) | 85 |
| HpyCH4V | TGCA | 2 cut(s) | 25, 178 |
| HpySE526I | ACGT | 1 cut(s) | 85 |
| HspAI | GCGC | 1 cut(s) | 47 |
| LpnPI | CCDG | 4 cut(s) | 38, 86, 188, 198 |
| Lsp1109I | GCAGC | 1 cut(s) | 61 |
| LweI | GCATC | 1 cut(s) | 34 |
| MaeI | CTAG | 1 cut(s) | 92 |
| MaeII | ACGT | 1 cut(s) | 85 |
| MboII | GAAGA | 2 cut(s) | 107, 143 |
| MluCI | AATT | 4 cut(s) | 58, 156, 167, 208 |
| MnlI | CCTC | 3 cut(s) | 25, 45, 132 |
| MroXI | GAANNNNTTC | 1 cut(s) | 99 |
| MseI | TTAA | 1 cut(s) | 161 |
| NlaIV | GGNNCC | 3 cut(s) | 13, 33, 143 |
| NsbI | TGCGCA | 1 cut(s) | 48 |
| PaqCI | CACCTGC | 1 cut(s) | 183 |
| PdmI | GAANNNNTTC | 1 cut(s) | 99 |
| PfeI | GAWTC | 2 cut(s) | 100, 107 |
| PkrI | GCNGC | 1 cut(s) | 51 |
| PspN4I | GGNNCC | 3 cut(s) | 13, 33, 143 |
| PspPI | GGNCC | 1 cut(s) | 31 |
| PstI | CTGCAG | 1 cut(s) | 27 |
| RsaI | GTAC | 2 cut(s) | 88, 126 |
| RsaNI | GTAC | 2 cut(s) | 87, 125 |
| SaqAI | TTAA | 1 cut(s) | 161 |
| SatI | GCNGC | 1 cut(s) | 50 |
| Sau96I | GGNCC | 1 cut(s) | 31 |
| SetI | ASST | 5 cut(s) | 17, 88, 147, 177, 230 |
| SfaNI | GCATC | 1 cut(s) | 34 |
| SfcI | CTRYAG | 1 cut(s) | 23 |
| SgeI | CNNG | 9 cut(s) | 53, 65, 85, 104, 116, 140, 187, 191, 225 |
| Sse9I | AATT | 4 cut(s) | 58, 156, 167, 208 |
| SspMI | CTAG | 1 cut(s) | 92 |
| TaaI | ACNGT | 2 cut(s) | 187, 198 |
| TaiI | ACGT | 1 cut(s) | 88 |
| TasI | AATT | 4 cut(s) | 58, 156, 167, 208 |
| TatI | WGTACW | 1 cut(s) | 124 |
| TfiI | GAWTC | 2 cut(s) | 100, 107 |
| Tru1I | TTAA | 1 cut(s) | 161 |
| Tru9I | TTAA | 1 cut(s) | 161 |
| TseI | GCWGC | 1 cut(s) | 49 |
| TspDTI | ATGAA | 3 cut(s) | 17, 137, 216 |
| TspGWI | ACGGA | 1 cut(s) | 21 |
| XapI | RAATTY | 3 cut(s) | 58, 156, 208 |
| XbaI | TCTAGA | 1 cut(s) | 91 |
| XmnI | GAANNNNTTC | 1 cut(s) | 99 |
| XspI | CTAG | 1 cut(s) | 92 |