Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0013715

Physical Location & Seq

Genomic Coordinates Reverse (-)

91074062 .. 91077508

Gene Structure 3447 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG529800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGAATTCTTGCCAACAACAGGACTGTTCAAAAGGAACTATGTCGTGCAATTCGTCTTTGAGCTTCAGCTTCCGTGGGCGACAGTAGACATTCTTGAGCAGTTGGAGGGTAATTATGGGGATTTGTCTGTGCAGAAGTATAGCAGTAATGTGGTTGAAAAAAGCCTGAAATACGCAGGTGAAGAGCGCCGTGCTCGCATTATTCAGGAACTGATAGGGAATATGCGATTGGACCAAATCATGCAAGACCCTTATGGCAATTATGTTATCCAAGCAGCACTCAGTCAATCAAAGTGGCCATATGAAGCTGCTGCTGTAGCTTTTGAGGCTATACCACGAACATTGGCTCAGAACTGTGGGGTTAATGTCATTAGAACGATGACAGCGCTGCAAGGAAAGTACCATGGAGGAACGAATTTTGGCCAAACTGCTAATATGGTATGCAATCTGGCAGAAAGAGTGATCCCAGGAATTGAGTTGGTGCGGTTAGCATCATGGTGTTTGCAGTATGAACCTCGTGAGAGGCCAAATGCCAAGTCTCTTGTGACTGCCCTTGTTCTTCTTCAAAAGGAAACTTCGTTGAAGCGTAAAGATATTATATCAGCTTTTGTTTCATGTATAGGTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUF

Protein Analysis

209

Amino Acids

23.5

Weight (kDa)

8.31

Isoelectric Point (pI)

29.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUF	PF00806	39 - 72	3e-07	Pumilio-family RNA binding repeat
Cpn60_TCP1	PF00118	97 - 152	7.8e-07	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013715)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g23851
rosa_chinensis	RchiOBHm_Chr1g0315431 RchiOBHm_Chr1g0324411 RchiOBHm_Chr1g0369591 RchiOBHm_Chr1g0381171 RchiOBHm_Chr2g0121141 RchiOBHm_Chr4g0394831 RchiOBHm_Chr4g0410241
rosa_multiflora	Rmu_sc0002669.1_g000014 Rmu_sc0008148.1_g000053 Rmu_sc0015525.1_g000009
rosa_roxburghii	Rroxscaffold_4G00287500
rosa_samantha	Rh2CG617500 Rh2DG665300 Rh3DG296700 Rh5AG529800 Rh5CG208600
rosa_wichuraiana	Rw2G052700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	167
Acc36I	ACCTGC	1 cut(s)	167
AccI	GTMKAC	1 cut(s)	87
AciI	CCGC	1 cut(s)	484
AclWI	GGATC	1 cut(s)	457
AcoI	YGGCCR	2 cut(s)	296, 421
AcsI	RAATTY	2 cut(s)	5, 415
AcuI	CTGAAG	1 cut(s)	50
AfaI	GTAC	1 cut(s)	401
AfeI	AGCGCT	1 cut(s)	387
AfiI	CCNNNNNNNGG	1 cut(s)	20
AgsI	TTSAA	4 cut(s)	31, 158, 566, 583
AjnI	CCWGG	1 cut(s)	466
AjuI	GAANNNNNNNTTGG	2 cut(s)	212, 244
AluBI	AGCT	5 cut(s)	64, 70, 308, 320, 605
AluI	AGCT	5 cut(s)	64, 70, 308, 320, 605
Alw21I	GWGCWC	1 cut(s)	196
Alw26I	GTCTC	1 cut(s)	543
AlwI	GGATC	1 cut(s)	457
AlwNI	CAGNNNCTG	1 cut(s)	211
Aor51HI	AGCGCT	1 cut(s)	387
AoxI	GGCC	3 cut(s)	296, 421, 524
ApeKI	GCWGC	4 cut(s)	275, 308, 311, 388
ApoI	RAATTY	2 cut(s)	5, 415
ArsI	GACNNNNNNTTYG	2 cut(s)	521, 553
AspLEI	GCGC	2 cut(s)	189, 388
AspS9I	GGNCC	1 cut(s)	232
AsuHPI	GGTGA	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	232
BalI	TGGCCA	2 cut(s)	298, 423
BauI	CACGAG	1 cut(s)	516
Bbv12I	GWGCWC	1 cut(s)	196
BbvI	GCAGC	4 cut(s)	287, 295, 298, 375
BceAI	ACGGC	1 cut(s)	174
BciT130I	CCWGG	1 cut(s)	468
BcoDI	GTCTC	1 cut(s)	543
BfmI	CTRYAG	1 cut(s)	315
BfoI	RGCGCY	2 cut(s)	190, 389
BfuAI	ACCTGC	1 cut(s)	167
BisI	GCNGC	4 cut(s)	276, 309, 312, 389
BlsI	GCNGC	4 cut(s)	277, 310, 313, 390
Bme1390I	CCNGG	1 cut(s)	468
Bme18I	GGWCC	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	232
BmrFI	CCNGG	1 cut(s)	468
BmsI	GCATC	1 cut(s)	500
BpuEI	CTTGAG	1 cut(s)	116
BsaJI	CCNNGG	3 cut(s)	74, 403, 466
Bsc4I	CCNNNNNNNGG	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	468
BseDI	CCNNGG	3 cut(s)	74, 403, 466
BseLI	CCNNNNNNNGG	1 cut(s)	20
BseMII	CTCAG	2 cut(s)	295, 362
BseXI	GCAGC	4 cut(s)	287, 295, 298, 375
BsgI	GTGCAG	1 cut(s)	152
BshFI	GGCC	3 cut(s)	298, 423, 526
BsiHKAI	GWGCWC	1 cut(s)	196
BslI	CCNNNNNNNGG	1 cut(s)	20
BsmAI	GTCTC	1 cut(s)	543
BsnI	GGCC	3 cut(s)	298, 423, 526
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp143I	GATC	1 cut(s)	462
Bsp19I	CCATGG	1 cut(s)	403
BspACI	CCGC	1 cut(s)	484
BspANI	GGCC	3 cut(s)	298, 423, 526
BspCNI	CTCAG	2 cut(s)	294, 361
BspMI	ACCTGC	1 cut(s)	167
BspPI	GGATC	1 cut(s)	457
BspQI	GCTCTTC	1 cut(s)	177
BssECI	CCNNGG	3 cut(s)	74, 403, 466
BssMI	GATC	1 cut(s)	462
BssSI	CACGAG	1 cut(s)	516
BssT1I	CCWWGG	1 cut(s)	403
Bst2BI	CACGAG	1 cut(s)	516
Bst2UI	CCWGG	1 cut(s)	468
Bst4CI	ACNGT	3 cut(s)	27, 85, 356
Bst6I	CTCTTC	1 cut(s)	177
BstC8I	GCNNGC	1 cut(s)	196
BstDEI	CTNAG	2 cut(s)	281, 348
BstDSI	CCRYGG	2 cut(s)	74, 403
BstH2I	RGCGCY	2 cut(s)	190, 389
BstHHI	GCGC	2 cut(s)	189, 388
BstKTI	GATC	1 cut(s)	465
BstMAI	GTCTC	1 cut(s)	543
BstMBI	GATC	1 cut(s)	462
BstMWI	GCNNNNNNNGC	3 cut(s)	195, 317, 326
BstNI	CCWGG	1 cut(s)	468
BstSCI	CCNGG	1 cut(s)	466
BstSFI	CTRYAG	1 cut(s)	315
BstV1I	GCAGC	4 cut(s)	287, 295, 298, 375
BsuRI	GGCC	3 cut(s)	298, 423, 526
BtgI	CCRYGG	2 cut(s)	74, 403
BveI	ACCTGC	1 cut(s)	167
Cac8I	GCNNGC	1 cut(s)	196
CaiI	CAGNNNCTG	1 cut(s)	211
CfoI	GCGC	2 cut(s)	189, 388
Cfr13I	GGNCC	1 cut(s)	232
Csp6I	GTAC	1 cut(s)	400
CspCI	CAANNNNNGTGG	4 cut(s)	275, 310, 324, 359
CviAII	CATG	4 cut(s)	241, 404, 495, 615
CviQI	GTAC	1 cut(s)	400
DdeI	CTNAG	2 cut(s)	281, 348
DpnI	GATC	1 cut(s)	464
DpnII	GATC	1 cut(s)	462
EaeI	YGGCCR	2 cut(s)	296, 421
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
Eco130I	CCWWGG	1 cut(s)	403
Eco47I	GGWCC	1 cut(s)	232
Eco47III	AGCGCT	1 cut(s)	387
Eco57I	CTGAAG	1 cut(s)	50
EcoRI	GAATTC	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	466
EcoT14I	CCWWGG	1 cut(s)	403
ErhI	CCWWGG	1 cut(s)	403
FaeI	CATG	4 cut(s)	244, 407, 498, 618
FatI	CATG	4 cut(s)	240, 403, 494, 614
FauNDI	CATATG	1 cut(s)	301
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	4 cut(s)	276, 309, 312, 389
Fsp4HI	GCNGC	4 cut(s)	276, 309, 312, 389
GlaI	GCGC	2 cut(s)	188, 387
GluI	GCNGC	4 cut(s)	276, 309, 312, 389
HaeII	RGCGCY	2 cut(s)	190, 389
HaeIII	GGCC	3 cut(s)	298, 423, 526
HhaI	GCGC	2 cut(s)	189, 388
Hin1II	CATG	4 cut(s)	244, 407, 498, 618
Hin6I	GCGC	2 cut(s)	187, 386
HinP1I	GCGC	2 cut(s)	187, 386
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	1 cut(s)	351
Hpy188III	TCNNGA	3 cut(s)	95, 206, 518
Hpy8I	GTNNAC	1 cut(s)	88
HpyCH4III	ACNGT	3 cut(s)	27, 85, 356
HpyCH4V	TGCA	6 cut(s)	49, 133, 244, 391, 444, 505
HpyF10VI	GCNNNNNNNGC	3 cut(s)	195, 317, 326
HpyF3I	CTNAG	2 cut(s)	281, 348
Hsp92II	CATG	4 cut(s)	244, 407, 498, 618
HspAI	GCGC	2 cut(s)	187, 386
Kzo9I	GATC	1 cut(s)	462
LguI	GCTCTTC	1 cut(s)	177
LpnPI	CCDG	7 cut(s)	6, 162, 179, 191, 434, 453, 480
Lsp1109I	GCAGC	4 cut(s)	287, 295, 298, 375
LweI	GCATC	1 cut(s)	500
MaeIII	GTNAC	1 cut(s)	544
MalI	GATC	1 cut(s)	464
MboI	GATC	1 cut(s)	462
MboII	GAAGA	3 cut(s)	194, 551, 554
MhlI	GDGCHC	1 cut(s)	196
MlsI	TGGCCA	2 cut(s)	298, 423
MluCI	AATT	6 cut(s)	5, 50, 112, 259, 415, 471
MluNI	TGGCCA	2 cut(s)	298, 423
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	5 cut(s)	100, 319, 401, 516, 525
Mox20I	TGGCCA	2 cut(s)	298, 423
MscI	TGGCCA	2 cut(s)	298, 423
MseI	TTAA	1 cut(s)	363
MslI	CAYNNNNRTG	1 cut(s)	496
Msp20I	TGGCCA	2 cut(s)	298, 423
MspR9I	CCNGG	1 cut(s)	468
MvaI	CCWGG	1 cut(s)	468
MwoI	GCNNNNNNNGC	3 cut(s)	195, 317, 326
NcoI	CCATGG	1 cut(s)	403
NdeI	CATATG	1 cut(s)	301
NdeII	GATC	1 cut(s)	462
NlaIII	CATG	4 cut(s)	244, 407, 498, 618
NmuCI	GTSAC	1 cut(s)	544
PaqCI	CACCTGC	1 cut(s)	167
PciSI	GCTCTTC	1 cut(s)	177
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PkrI	GCNGC	4 cut(s)	277, 310, 313, 390
Psp6I	CCWGG	1 cut(s)	466
PspGI	CCWGG	1 cut(s)	466
PspPI	GGNCC	1 cut(s)	232
PstNI	CAGNNNCTG	1 cut(s)	211
RsaI	GTAC	1 cut(s)	401
RsaNI	GTAC	1 cut(s)	400
RseI	CAYNNNNRTG	1 cut(s)	496
SapI	GCTCTTC	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	4 cut(s)	276, 309, 312, 389
Sau3AI	GATC	1 cut(s)	462
Sau96I	GGNCC	1 cut(s)	232
ScrFI	CCNGG	1 cut(s)	468
SduI	GDGCHC	1 cut(s)	196
SetI	ASST	8 cut(s)	66, 72, 181, 310, 322, 517, 607, 625
SfaNI	GCATC	1 cut(s)	500
SfcI	CTRYAG	1 cut(s)	315
SinI	GGWCC	1 cut(s)	232
SmiMI	CAYNNNNRTG	1 cut(s)	496
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	6 cut(s)	5, 50, 112, 259, 415, 471
SsiI	CCGC	1 cut(s)	484
StyD4I	CCNGG	1 cut(s)	466
StyI	CCWWGG	1 cut(s)	403
TaaI	ACNGT	3 cut(s)	27, 85, 356
TasI	AATT	6 cut(s)	5, 50, 112, 259, 415, 471
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TseFI	GTSAC	1 cut(s)	544
TseI	GCWGC	4 cut(s)	275, 308, 311, 388
Tsp45I	GTSAC	1 cut(s)	544
TspDTI	ATGAA	3 cut(s)	318, 525, 603
TspGWI	ACGGA	1 cut(s)	63
VpaK11BI	GGWCC	1 cut(s)	232
XapI	RAATTY	2 cut(s)	5, 415
XmiI	GTMKAC	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.