Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002669.1

Orthogroup ID

OG0013715

Physical Location & Seq

Genomic Coordinates Forward (+)

72643 .. 81067

Gene Structure 8425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002669.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

atggtgggtcgagccctgaattccgaccaccttggacagcccatacgagccggtgaccgtgtcactagacctcaatttgctggacagagatcccagagtgaggtttctttgccaggtgggaaaacagaggagggagacaaggatgatggtgacacagcaacaagagaagcgaaagaggagattggtttggatcctaagcttgtgaatgttgtcactgttcttgaaccatttttgtcaaagggaggaacctcagaactgcagaaggcccctgaacaagatgtgagcagggaattcctttacgtttcagattttcaatttactttagaagagactcttgattcctttcagaaatcggtatgcgaagacatgaggaaccttcatatagaaattttaagacaattccacatgcaagcgtaccatggaggaacgaattttggccgaactgctaatatggtatgcaatctggcaaaaagagtgatcccaggaattgagttggtgcggtatacagaatttgctggggcagttcctactagacctgcacaggacagtcaggacttggcattttcagtttcaaggtttatacaaaatggtggttcttttgccaactactacatgtaccatggaggaacgaattttggccaaactgctaatatggtatgcaatctggcagaaagagtgatcccaggaattgagttggtgcggttagcatcatggtgtttgcagtatgaacctcgtgagaggccaaatgccaagtctcttgtgactgcccttgttcttcttcaaaaggaaacttcgttgaagcgtaaagatattatatcagcttttgtttcatgtataggtagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006104 GO:0006139 GO:0006163 GO:0006164 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008893 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0010945 GO:0015936 GO:0015937 GO:0016462 GO:0016787 GO:0016788 GO:0016794 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

NUDIX

Protein Analysis

281

Amino Acids

31.17

Weight (kDa)

5.82

Isoelectric Point (pI)

47.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013715)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g23851
rosa_chinensis	RchiOBHm_Chr1g0315431 RchiOBHm_Chr1g0324411 RchiOBHm_Chr1g0369591 RchiOBHm_Chr1g0381171 RchiOBHm_Chr2g0121141 RchiOBHm_Chr4g0394831 RchiOBHm_Chr4g0410241
rosa_multiflora	Rmu_sc0002669.1_g000014 Rmu_sc0008148.1_g000053 Rmu_sc0015525.1_g000009
rosa_roxburghii	Rroxscaffold_4G00287500
rosa_samantha	Rh2CG617500 Rh2DG665300 Rh3DG296700 Rh5AG529800 Rh5CG208600
rosa_wichuraiana	Rw2G052700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	544
AccI	GTMKAC	1 cut(s)	503
AciI	CCGC	2 cut(s)	499, 700
AclWI	GGATC	5 cut(s)	84, 185, 198, 472, 673
AcoI	YGGCCR	2 cut(s)	436, 637
AcsI	RAATTY	6 cut(s)	19, 290, 387, 430, 509, 631
AfaI	GTAC	2 cut(s)	416, 617
AfiI	CCNNNNNNNGG	1 cut(s)	100
AflIII	ACRYGT	1 cut(s)	612
AgsI	TTSAA	5 cut(s)	224, 314, 573, 782, 799
AjnI	CCWGG	3 cut(s)	112, 481, 682
AluBI	AGCT	2 cut(s)	199, 821
AluI	AGCT	2 cut(s)	199, 821
Alw26I	GTCTC	3 cut(s)	129, 323, 759
AlwI	GGATC	5 cut(s)	84, 185, 198, 472, 673
AoxI	GGCC	4 cut(s)	264, 436, 637, 740
ApoI	RAATTY	6 cut(s)	19, 290, 387, 430, 509, 631
ArsI	GACNNNNNNTTYG	2 cut(s)	737, 769
AspS9I	GGNCC	1 cut(s)	265
AsuHPI	GGTGA	2 cut(s)	65, 161
BalI	TGGCCA	1 cut(s)	639
BamHI	GGATCC	1 cut(s)	190
BanII	GRGCYC	1 cut(s)	16
BauI	CACGAG	1 cut(s)	732
BbsI	GAAGAC	1 cut(s)	369
BccI	CCATC	1 cut(s)	140
BciT130I	CCWGG	3 cut(s)	114, 483, 684
BcoDI	GTCTC	3 cut(s)	129, 323, 759
BfaI	CTAG	2 cut(s)	66, 531
BfmI	CTRYAG	1 cut(s)	257
BfuAI	ACCTGC	1 cut(s)	544
Bme1390I	CCNGG	3 cut(s)	114, 483, 684
BmgT120I	GGNCC	1 cut(s)	265
BmiI	GGNNCC	4 cut(s)	192, 247, 267, 374
BmrFI	CCNGG	3 cut(s)	114, 483, 684
BmsI	GCATC	1 cut(s)	716
BpiI	GAAGAC	1 cut(s)	369
Bpu10I	CCTNAGC	1 cut(s)	195
BsaJI	CCNNGG	5 cut(s)	31, 418, 481, 619, 682
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse118I	RCCGGY	1 cut(s)	50
BseBI	CCWGG	3 cut(s)	114, 483, 684
BseDI	CCNNGG	5 cut(s)	31, 418, 481, 619, 682
BseGI	GGATG	1 cut(s)	148
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMII	CTCAG	1 cut(s)	264
BseRI	GAGGAG	2 cut(s)	143, 191
BseYI	CCCAGC	1 cut(s)	515
BsgI	GTGCAG	1 cut(s)	522
BshFI	GGCC	4 cut(s)	266, 438, 639, 742
BsiSI	CCGG	1 cut(s)	51
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmAI	GTCTC	3 cut(s)	129, 323, 759
BsnI	GGCC	4 cut(s)	266, 438, 639, 742
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp143I	GATC	4 cut(s)	89, 190, 477, 678
Bsp19I	CCATGG	2 cut(s)	418, 619
BspACI	CCGC	2 cut(s)	499, 700
BspANI	GGCC	4 cut(s)	266, 438, 639, 742
BspCNI	CTCAG	1 cut(s)	263
BspLI	GGNNCC	4 cut(s)	192, 247, 267, 374
BspMAI	CTGCAG	1 cut(s)	261
BspMI	ACCTGC	1 cut(s)	544
BspPI	GGATC	5 cut(s)	84, 185, 198, 472, 673
BsrFI	RCCGGY	1 cut(s)	50
BssAI	RCCGGY	1 cut(s)	50
BssECI	CCNNGG	5 cut(s)	31, 418, 481, 619, 682
BssMI	GATC	4 cut(s)	89, 190, 477, 678
BssNAI	GTATAC	1 cut(s)	504
BssSI	CACGAG	1 cut(s)	732
BssT1I	CCWWGG	3 cut(s)	31, 418, 619
Bst1107I	GTATAC	1 cut(s)	504
Bst2BI	CACGAG	1 cut(s)	732
Bst2UI	CCWGG	3 cut(s)	114, 483, 684
Bst4CI	ACNGT	3 cut(s)	59, 217, 548
Bst6I	CTCTTC	1 cut(s)	321
BstC8I	GCNNGC	1 cut(s)	411
BstDEI	CTNAG	2 cut(s)	195, 250
BstDSI	CCRYGG	2 cut(s)	418, 619
BstEII	GGTNACC	1 cut(s)	53
BstF5I	GGATG	1 cut(s)	148
BstKTI	GATC	4 cut(s)	92, 193, 480, 681
BstMAI	GTCTC	3 cut(s)	129, 323, 759
BstMBI	GATC	4 cut(s)	89, 190, 477, 678
BstNI	CCWGG	3 cut(s)	114, 483, 684
BstNSI	RCATGY	2 cut(s)	409, 616
BstPI	GGTNACC	1 cut(s)	53
BstSCI	CCNGG	3 cut(s)	112, 481, 682
BstSFI	CTRYAG	1 cut(s)	257
BstV2I	GAAGAC	1 cut(s)	369
BstX2I	RGATCY	2 cut(s)	89, 190
BstYI	RGATCY	2 cut(s)	89, 190
BstZ17I	GTATAC	1 cut(s)	504
BsuRI	GGCC	4 cut(s)	266, 438, 639, 742
BtgI	CCRYGG	2 cut(s)	418, 619
BtsCI	GGATG	1 cut(s)	148
BtsIMutI	CAGTG	1 cut(s)	213
BveI	ACCTGC	1 cut(s)	544
Cac8I	GCNNGC	1 cut(s)	411
Cfr10I	RCCGGY	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	265
Csp6I	GTAC	2 cut(s)	415, 616
CviAII	CATG	7 cut(s)	367, 406, 419, 613, 620, 711, 831
CviJI	RGCY	9 cut(s)	14, 40, 50, 199, 266, 438, 639, 742, 821
CviKI_1	RGCY	9 cut(s)	14, 40, 50, 199, 266, 438, 639, 742, 821
CviQI	GTAC	2 cut(s)	415, 616
DdeI	CTNAG	2 cut(s)	195, 250
DpnI	GATC	4 cut(s)	91, 192, 479, 680
DpnII	GATC	4 cut(s)	89, 190, 477, 678
EaeI	YGGCCR	2 cut(s)	436, 637
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
Eco130I	CCWWGG	3 cut(s)	31, 418, 619
Eco24I	GRGCYC	1 cut(s)	16
Eco91I	GGTNACC	1 cut(s)	53
EcoO109I	RGGNCCY	1 cut(s)	265
EcoO65I	GGTNACC	1 cut(s)	53
EcoRI	GAATTC	2 cut(s)	19, 290
EcoRII	CCWGG	3 cut(s)	112, 481, 682
EcoT14I	CCWWGG	3 cut(s)	31, 418, 619
EcoT38I	GRGCYC	1 cut(s)	16
ErhI	CCWWGG	3 cut(s)	31, 418, 619
FaeI	CATG	7 cut(s)	370, 409, 422, 616, 623, 714, 834
FalI	AAGNNNNNCTT	2 cut(s)	318, 350
FatI	CATG	7 cut(s)	366, 405, 418, 612, 619, 710, 830
FblI	GTMKAC	1 cut(s)	503
FokI	GGATG	1 cut(s)	155
FriOI	GRGCYC	1 cut(s)	16
FspBI	CTAG	2 cut(s)	66, 531
GsaI	CCCAGC	1 cut(s)	519
HaeIII	GGCC	4 cut(s)	266, 438, 639, 742
HapII	CCGG	1 cut(s)	51
Hin1II	CATG	7 cut(s)	370, 409, 422, 616, 623, 714, 834
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	2 cut(s)	331, 338
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	2 cut(s)	65, 161
Hpy166II	GTNNAC	1 cut(s)	504
Hpy188I	TCNGA	4 cut(s)	25, 253, 307, 348
Hpy188III	TCNNGA	4 cut(s)	221, 335, 551, 734
Hpy8I	GTNNAC	1 cut(s)	504
HpyAV	CCTTC	2 cut(s)	256, 386
HpyCH4III	ACNGT	3 cut(s)	59, 217, 548
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	6 cut(s)	259, 409, 459, 539, 660, 721
HpyF3I	CTNAG	2 cut(s)	195, 250
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	7 cut(s)	370, 409, 422, 616, 623, 714, 834
Kzo9I	GATC	4 cut(s)	89, 190, 477, 678
LweI	GCATC	1 cut(s)	716
MaeI	CTAG	2 cut(s)	66, 531
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	5 cut(s)	53, 61, 149, 211, 760
MalI	GATC	4 cut(s)	91, 192, 479, 680
MboI	GATC	4 cut(s)	89, 190, 477, 678
MboII	GAAGA	4 cut(s)	338, 374, 767, 770
MflI	RGATCY	2 cut(s)	89, 190
MhlI	GDGCHC	1 cut(s)	16
MlsI	TGGCCA	1 cut(s)	639
MluNI	TGGCCA	1 cut(s)	639
MlyI	GAGTC	1 cut(s)	325
MmeI	TCCRAC	1 cut(s)	48
Mox20I	TGGCCA	1 cut(s)	639
MscI	TGGCCA	1 cut(s)	639
MseI	TTAA	1 cut(s)	392
MslI	CAYNNNNRTG	1 cut(s)	712
Msp20I	TGGCCA	1 cut(s)	639
MspI	CCGG	1 cut(s)	51
MspR9I	CCNGG	3 cut(s)	114, 483, 684
MvaI	CCWGG	3 cut(s)	114, 483, 684
NcoI	CCATGG	2 cut(s)	418, 619
NdeII	GATC	4 cut(s)	89, 190, 477, 678
NlaIII	CATG	7 cut(s)	370, 409, 422, 616, 623, 714, 834
NlaIV	GGNNCC	4 cut(s)	192, 247, 267, 374
NmuCI	GTSAC	5 cut(s)	53, 61, 149, 211, 760
NspI	RCATGY	2 cut(s)	409, 616
PciI	ACATGT	1 cut(s)	612
PfeI	GAWTC	1 cut(s)	338
PflFI	GACNNNGTC	1 cut(s)	59
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
PscI	ACATGT	1 cut(s)	612
Psp6I	CCWGG	3 cut(s)	112, 481, 682
PspEI	GGTNACC	1 cut(s)	53
PspFI	CCCAGC	1 cut(s)	515
PspGI	CCWGG	3 cut(s)	112, 481, 682
PspN4I	GGNNCC	4 cut(s)	192, 247, 267, 374
PspPI	GGNCC	1 cut(s)	265
PstI	CTGCAG	1 cut(s)	261
PsuI	RGATCY	2 cut(s)	89, 190
PsyI	GACNNNGTC	1 cut(s)	59
RsaI	GTAC	2 cut(s)	416, 617
RsaNI	GTAC	2 cut(s)	415, 616
RseI	CAYNNNNRTG	1 cut(s)	712
SaqAI	TTAA	1 cut(s)	392
Sau3AI	GATC	4 cut(s)	89, 190, 477, 678
Sau96I	GGNCC	1 cut(s)	265
SchI	GAGTC	1 cut(s)	325
ScrFI	CCNGG	3 cut(s)	114, 483, 684
SduI	GDGCHC	1 cut(s)	16
SfaNI	GCATC	1 cut(s)	716
SfcI	CTRYAG	1 cut(s)	257
SmiMI	CAYNNNNRTG	1 cut(s)	712
SsiI	CCGC	2 cut(s)	499, 700
SspMI	CTAG	2 cut(s)	66, 531
StyD4I	CCNGG	3 cut(s)	112, 481, 682
StyI	CCWWGG	3 cut(s)	31, 418, 619
TaaI	ACNGT	3 cut(s)	59, 217, 548
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	1 cut(s)	10
TfiI	GAWTC	1 cut(s)	338
Tru1I	TTAA	1 cut(s)	392
Tru9I	TTAA	1 cut(s)	392
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	5 cut(s)	53, 61, 149, 211, 760
Tsp45I	GTSAC	5 cut(s)	53, 61, 149, 211, 760
TspDTI	ATGAA	3 cut(s)	368, 741, 819
TspRI	CASTG	1 cut(s)	220
Tth111I	GACNNNGTC	1 cut(s)	59
XapI	RAATTY	6 cut(s)	19, 290, 387, 430, 509, 631
XceI	RCATGY	2 cut(s)	409, 616
XmiI	GTMKAC	1 cut(s)	503
XspI	CTAG	2 cut(s)	66, 531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.