Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015525.1

Orthogroup ID

OG0013715

Physical Location & Seq

Genomic Coordinates Reverse (-)

53741 .. 55089

Gene Structure 1349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015525.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

atattgaagttcaaaccagatgttgtgattacagaaaaggggctcagtgacctggcatgccattatctgagcaaggccggtgttactgcaattaggaggttgagaaaaacaaaaaaaaacagaattgccaaggcttgtggggcagttattgtcaacagacccgatgaactgcaagaatctgatattggtactggggctggattatttgaggttaaaaaaattggagatgagttctttacattcatcgttgattgcaaagatcccaaggcatgtacagtactcttaagaggtccgagtaaggatatgttaaacgaagtggaaagaaatttacaggatgccatggcagtagcaagaaatatcctgaagaatccaaaacttgttcctggtggtggtgctgcagagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0005975 GO:0006457 GO:0006458 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006884 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008361 GO:0009311 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009826 GO:0009987 GO:0009992 GO:0010033 GO:0014070 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019725 GO:0023052 GO:0030104 GO:0032502 GO:0032535 GO:0032989 GO:0032991 GO:0036211 GO:0040007 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043412 GO:0044183 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046677 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051716 GO:0055082 GO:0060560 GO:0061077 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090066 GO:0101031 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

134

Amino Acids

14.58

Weight (kDa)

9.25

Isoelectric Point (pI)

48.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013715)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g23851
rosa_chinensis	RchiOBHm_Chr1g0315431 RchiOBHm_Chr1g0324411 RchiOBHm_Chr1g0369591 RchiOBHm_Chr1g0381171 RchiOBHm_Chr2g0121141 RchiOBHm_Chr4g0394831 RchiOBHm_Chr4g0410241
rosa_multiflora	Rmu_sc0002669.1_g000014 Rmu_sc0008148.1_g000053 Rmu_sc0015525.1_g000009
rosa_roxburghii	Rroxscaffold_4G00287500
rosa_samantha	Rh2CG617500 Rh2DG665300 Rh3DG296700 Rh5AG529800 Rh5CG208600
rosa_wichuraiana	Rw2G052700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	254
AcsI	RAATTY	1 cut(s)	325
AcuI	CTGAAG	1 cut(s)	383
AfaI	GTAC	3 cut(s)	190, 274, 279
AfiI	CCNNNNNNNGG	1 cut(s)	389
AflII	CTTAAG	1 cut(s)	283
AgsI	TTSAA	2 cut(s)	7, 13
AjnI	CCWGG	2 cut(s)	51, 382
AjuI	GAANNNNNNNTTGG	2 cut(s)	168, 200
AlwI	GGATC	1 cut(s)	254
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	1 cut(s)	395
ApoI	RAATTY	1 cut(s)	325
AspS9I	GGNCC	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	290
BanII	GRGCYC	1 cut(s)	45
BbvI	GCAGC	1 cut(s)	382
BciT130I	CCWGG	2 cut(s)	53, 384
BfmI	CTRYAG	1 cut(s)	396
BfrI	CTTAAG	1 cut(s)	283
BisI	GCNGC	1 cut(s)	396
BlsI	GCNGC	1 cut(s)	397
BmcAI	AGTACT	1 cut(s)	279
Bme1390I	CCNGG	2 cut(s)	53, 384
Bme18I	GGWCC	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	290
BmrFI	CCNGG	2 cut(s)	53, 384
BmrI	ACTGGG	1 cut(s)	201
BmsI	GCATC	1 cut(s)	325
BmuI	ACTGGG	1 cut(s)	201
BsaJI	CCNNGG	3 cut(s)	129, 264, 339
Bsc4I	CCNNNNNNNGG	1 cut(s)	389
Bse118I	RCCGGY	1 cut(s)	77
Bse1I	ACTGG	1 cut(s)	196
BseBI	CCWGG	2 cut(s)	53, 384
BseDI	CCNNGG	3 cut(s)	129, 264, 339
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	1 cut(s)	389
BseMII	CTCAG	2 cut(s)	58, 59
BseNI	ACTGG	1 cut(s)	196
BseXI	GCAGC	1 cut(s)	382
BshFI	GGCC	1 cut(s)	77
BsiSI	CCGG	1 cut(s)	78
BslI	CCNNNNNNNGG	1 cut(s)	389
BsnI	GGCC	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp1407I	TGTACA	1 cut(s)	272
Bsp143I	GATC	1 cut(s)	259
Bsp19I	CCATGG	1 cut(s)	339
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	2 cut(s)	57, 60
BspMAI	CTGCAG	1 cut(s)	400
BspPI	GGATC	1 cut(s)	254
BspTI	CTTAAG	1 cut(s)	283
BsrFI	RCCGGY	1 cut(s)	77
BsrGI	TGTACA	1 cut(s)	272
BsrI	ACTGG	1 cut(s)	196
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	3 cut(s)	129, 264, 339
BssMI	GATC	1 cut(s)	259
BssT1I	CCWWGG	3 cut(s)	129, 264, 339
Bst2UI	CCWGG	2 cut(s)	53, 384
Bst4CI	ACNGT	1 cut(s)	277
BstAFI	CTTAAG	1 cut(s)	283
BstAUI	TGTACA	1 cut(s)	272
BstC8I	GCNNGC	1 cut(s)	58
BstDEI	CTNAG	2 cut(s)	44, 68
BstDSI	CCRYGG	1 cut(s)	339
BstF5I	GGATG	1 cut(s)	340
BstKTI	GATC	1 cut(s)	262
BstMBI	GATC	1 cut(s)	259
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstNI	CCWGG	2 cut(s)	53, 384
BstNSI	RCATGY	2 cut(s)	60, 273
BstSCI	CCNGG	2 cut(s)	51, 382
BstSFI	CTRYAG	1 cut(s)	396
BstV1I	GCAGC	1 cut(s)	382
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
BsuRI	GGCC	1 cut(s)	77
BtgI	CCRYGG	1 cut(s)	339
BtsCI	GGATG	1 cut(s)	340
BtsIMutI	CAGTG	1 cut(s)	52
Cac8I	GCNNGC	1 cut(s)	58
Cfr10I	RCCGGY	1 cut(s)	77
Cfr13I	GGNCC	1 cut(s)	290
Csp6I	GTAC	3 cut(s)	189, 273, 278
CspCI	CAANNNNNGTGG	2 cut(s)	118, 153
CviAII	CATG	3 cut(s)	57, 270, 340
CviJI	RGCY	4 cut(s)	43, 77, 134, 197
CviKI_1	RGCY	4 cut(s)	43, 77, 134, 197
CviQI	GTAC	3 cut(s)	189, 273, 278
DdeI	CTNAG	2 cut(s)	44, 68
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
Eco130I	CCWWGG	3 cut(s)	129, 264, 339
Eco24I	GRGCYC	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	290
Eco57I	CTGAAG	1 cut(s)	383
EcoRII	CCWGG	2 cut(s)	51, 382
EcoT14I	CCWWGG	3 cut(s)	129, 264, 339
EcoT38I	GRGCYC	1 cut(s)	45
ErhI	CCWWGG	3 cut(s)	129, 264, 339
FaeI	CATG	3 cut(s)	60, 273, 343
FaiI	YATR	4 cut(s)	58, 271, 305, 341
FatI	CATG	3 cut(s)	56, 269, 339
Fnu4HI	GCNGC	1 cut(s)	396
FokI	GGATG	1 cut(s)	347
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	1 cut(s)	396
GluI	GCNGC	1 cut(s)	396
HaeIII	GGCC	1 cut(s)	77
HapII	CCGG	1 cut(s)	78
Hin1II	CATG	3 cut(s)	60, 273, 343
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HinfI	GANTC	2 cut(s)	176, 367
HpaII	CCGG	1 cut(s)	78
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	3 cut(s)	69, 181, 294
Hpy188III	TCNNGA	1 cut(s)	361
Hpy8I	GTNNAC	1 cut(s)	154
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4V	TGCA	4 cut(s)	89, 172, 255, 398
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	2 cut(s)	44, 68
Hsp92II	CATG	3 cut(s)	60, 273, 343
Kzo9I	GATC	1 cut(s)	259
Lsp1109I	GCAGC	1 cut(s)	382
LweI	GCATC	1 cut(s)	325
MaeIII	GTNAC	2 cut(s)	47, 82
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	1 cut(s)	376
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	4 cut(s)	90, 123, 219, 325
MnlI	CCTC	3 cut(s)	90, 202, 281
MseI	TTAA	3 cut(s)	213, 284, 308
MspCI	CTTAAG	1 cut(s)	283
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	2 cut(s)	53, 384
MvaI	CCWGG	2 cut(s)	53, 384
MwoI	GCNNNNNNNGC	1 cut(s)	140
NcoI	CCATGG	1 cut(s)	339
NdeII	GATC	1 cut(s)	259
NlaIII	CATG	3 cut(s)	60, 273, 343
NmuCI	GTSAC	1 cut(s)	47
NspI	RCATGY	2 cut(s)	60, 273
PaeI	GCATGC	1 cut(s)	60
PfeI	GAWTC	2 cut(s)	176, 367
PkrI	GCNGC	1 cut(s)	397
Psp6I	CCWGG	2 cut(s)	51, 382
PspGI	CCWGG	2 cut(s)	51, 382
PspPI	GGNCC	1 cut(s)	290
PstI	CTGCAG	1 cut(s)	400
PsuI	RGATCY	1 cut(s)	259
RsaI	GTAC	3 cut(s)	190, 274, 279
RsaNI	GTAC	3 cut(s)	189, 273, 278
SaqAI	TTAA	3 cut(s)	213, 284, 308
SatI	GCNGC	1 cut(s)	396
Sau3AI	GATC	1 cut(s)	259
Sau96I	GGNCC	1 cut(s)	290
ScaI	AGTACT	1 cut(s)	279
ScrFI	CCNGG	2 cut(s)	53, 384
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	4 cut(s)	54, 101, 213, 292
SfaNI	GCATC	1 cut(s)	325
SfcI	CTRYAG	1 cut(s)	396
SinI	GGWCC	1 cut(s)	290
SmlI	CTYRAG	1 cut(s)	283
SmoI	CTYRAG	1 cut(s)	283
SphI	GCATGC	1 cut(s)	60
Sse9I	AATT	4 cut(s)	90, 123, 219, 325
StyD4I	CCNGG	2 cut(s)	51, 382
StyI	CCWWGG	3 cut(s)	129, 264, 339
TaaI	ACNGT	1 cut(s)	277
TasI	AATT	4 cut(s)	90, 123, 219, 325
TatI	WGTACW	2 cut(s)	272, 277
TfiI	GAWTC	2 cut(s)	176, 367
Tru1I	TTAA	3 cut(s)	213, 284, 308
Tru9I	TTAA	3 cut(s)	213, 284, 308
TscAI	CASTG	1 cut(s)	52
TseFI	GTSAC	1 cut(s)	47
TseI	GCWGC	1 cut(s)	395
Tsp45I	GTSAC	1 cut(s)	47
TspDTI	ATGAA	2 cut(s)	180, 232
TspRI	CASTG	1 cut(s)	52
Vha464I	CTTAAG	1 cut(s)	283
VpaK11BI	GGWCC	1 cut(s)	290
XapI	RAATTY	1 cut(s)	325
XceI	RCATGY	2 cut(s)	60, 273
ZrmI	AGTACT	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.