FvH4_7g28050

Chloride conductance regulatory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0008009
Physical Location & Seq
Reverse (-)
20844187 .. 20847247
3061 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g28050.t2

Sequence Viewer

Length: 678 bp
ATGAGTCAAGGGATTAGAGAATTCACTGCCATAGTCGAGAGGGATGGTGTTCACCAACCAGTTCTGGATGCACAGAATGGCGAGGAGCTGATGCATGTCCAGCCTGGAGTTTCTATTGTCCTTGGTAGTCACCCTCCTGAGTCCCCTGGCACTCTCTATATCTCCACCAAGCAAGTGGTTTGGTTGAGTGATACCAACAGGACCAAAGGTTATGCGGTGGACTTCCTGTCTATATCACTGCATGCTGTCTCCAGGGACCCAGAGGCGTACACGTCTCCTTGCATATATGCTCAGATTGAAACTGGAGCTGATGAAGATGAGTCGGAGGGCTCAGATGAAGAATGCAATGGTGTTTTGGTTCTGTCCAAGATCACTGAAATGAGGCTTGTCCCTTCCGATCCTAATCAATTGGATTCTTTGTTTGATGTATTCTGTGAGTGTGCTGAGCTAAATCCTGAACCAATTGAAGACAATGAAGAAGAAGAGCATAATTGGATTTTCAGTGCTGACCAGTTGGAAGATGAGGCAACAGGAGATGATTCTGAGCCTTCAATTGCAATTGGGCAATCTAATGGGGATCATGACCTAGCTCGTACTGTGCTTGAGCTTCAGATCAATGACCAACGCTTTGAGGATGCAGAAGAGATGGAGCATGAGGCTGACAGTGCACGACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
Voldacs

Protein Analysis

226

Amino Acids

24.93

Weight (kDa)

4.05

Isoelectric Point (pI)

53.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Voldacs PF03517 50 - 176 8.7e-27 Regulator of volume decrease after cellular swelling
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 215
AclWI GGATC 2 cut(s) 392, 585
AcsI RAATTY 1 cut(s) 20
AcuI CTGAAG 1 cut(s) 593
AfaI GTAC 2 cut(s) 269, 595
AflIII ACRYGT 1 cut(s) 270
AgsI TTSAA 3 cut(s) 299, 467, 552
AhdI GACNNNNNGTC 1 cut(s) 226
AjiI CACGTC 1 cut(s) 273
AjnI CCWGG 3 cut(s) 103, 145, 251
AluBI AGCT 5 cut(s) 88, 308, 448, 590, 607
AluI AGCT 5 cut(s) 88, 308, 448, 590, 607
Alw21I GWGCWC 1 cut(s) 670
Alw26I GTCTC 2 cut(s) 253, 279
Alw44I GTGCAC 1 cut(s) 666
AlwI GGATC 2 cut(s) 392, 585
ApaLI GTGCAC 1 cut(s) 666
ApoI RAATTY 1 cut(s) 20
ArsI GACNNNNNNTTYG 2 cut(s) 611, 643
AspS9I GGNCC 2 cut(s) 201, 256
AsuHPI GGTGA 2 cut(s) 44, 122
AvaII GGWCC 2 cut(s) 201, 256
BaeGI GKGCMC 1 cut(s) 670
BanII GRGCYC 1 cut(s) 332
BbsI GAAGAC 1 cut(s) 474
Bbv12I GWGCWC 1 cut(s) 670
BccI CCATC 2 cut(s) 38, 640
BciT130I CCWGG 3 cut(s) 105, 147, 253
BcoDI GTCTC 2 cut(s) 253, 279
BfaI CTAG 1 cut(s) 587
BlpI GCTNAGC 1 cut(s) 444
Bme1390I CCNGG 3 cut(s) 105, 147, 253
Bme18I GGWCC 2 cut(s) 201, 256
BmeRI GACNNNNNGTC 1 cut(s) 226
BmgBI CACGTC 1 cut(s) 273
BmgT120I GGNCC 2 cut(s) 201, 256
BmiI GGNNCC 2 cut(s) 257, 258
BmrFI CCNGG 3 cut(s) 105, 147, 253
BmsI GCATC 3 cut(s) 58, 81, 625
BpiI GAAGAC 1 cut(s) 474
BpmI CTGGAG 3 cut(s) 126, 235, 324
Bpu1102I GCTNAGC 1 cut(s) 444
BpuEI CTTGAG 1 cut(s) 623
BsaBI GATNNNNATC 1 cut(s) 402
BsaJI CCNNGG 3 cut(s) 121, 145, 252
Bse1I ACTGG 3 cut(s) 59, 307, 511
Bse3DI GCAATG 1 cut(s) 352
Bse8I GATNNNNATC 1 cut(s) 402
BseBI CCWGG 3 cut(s) 105, 147, 253
BseDI CCNNGG 3 cut(s) 121, 145, 252
BseGI GGATG 3 cut(s) 49, 73, 640
BseJI GATNNNNATC 1 cut(s) 402
BseMI GCAATG 1 cut(s) 352
BseMII CTCAG 5 cut(s) 129, 305, 345, 435, 534
BseNI ACTGG 3 cut(s) 59, 307, 511
BseRI GAGGAG 1 cut(s) 98
BseSI GKGCMC 1 cut(s) 670
BsiHKAI GWGCWC 1 cut(s) 670
BslFI GGGAC 3 cut(s) 127, 269, 374
BsmAI GTCTC 2 cut(s) 253, 279
BsmBI CGTCTC 1 cut(s) 279
BsmFI GGGAC 3 cut(s) 127, 269, 374
BsmI GAATGC 1 cut(s) 347
Bsp1286I GDGCHC 2 cut(s) 332, 670
Bsp143I GATC 4 cut(s) 369, 397, 577, 612
Bsp1720I GCTNAGC 1 cut(s) 444
BspACI CCGC 1 cut(s) 215
BspCNI CTCAG 5 cut(s) 130, 304, 344, 436, 535
BspHI TCATGA 1 cut(s) 580
BspLI GGNNCC 2 cut(s) 257, 258
BspPI GGATC 2 cut(s) 392, 585
BspQI GCTCTTC 1 cut(s) 477
BsrDI GCAATG 1 cut(s) 352
BsrI ACTGG 3 cut(s) 59, 307, 511
BssECI CCNNGG 3 cut(s) 121, 145, 252
BssMI GATC 4 cut(s) 369, 397, 577, 612
BssT1I CCWWGG 1 cut(s) 121
Bst2UI CCWGG 3 cut(s) 105, 147, 253
Bst4CI ACNGT 2 cut(s) 598, 665
Bst6I CTCTTC 2 cut(s) 477, 636
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 5 cut(s) 138, 291, 331, 444, 543
BstF5I GGATG 3 cut(s) 49, 73, 640
BstKTI GATC 4 cut(s) 372, 400, 580, 615
BstMAI GTCTC 2 cut(s) 253, 279
BstMBI GATC 4 cut(s) 369, 397, 577, 612
BstMWI GCNNNNNNNGC 2 cut(s) 100, 665
BstNI CCWGG 3 cut(s) 105, 147, 253
BstNSI RCATGY 2 cut(s) 98, 245
BstSCI CCNGG 3 cut(s) 103, 145, 251
BstSLI GKGCMC 1 cut(s) 670
BstV2I GAAGAC 1 cut(s) 474
BstXI CCANNNNNNTGG 1 cut(s) 175
BtrI CACGTC 1 cut(s) 273
BtsCI GGATG 3 cut(s) 49, 73, 640
BtsI GCAGTG 2 cut(s) 24, 236
BtsIMutI CAGTG 6 cut(s) 24, 236, 372, 508, 670, 673
Cac8I GCNNGC 1 cut(s) 243
CciI TCATGA 1 cut(s) 580
Cfr13I GGNCC 2 cut(s) 201, 256
Csp6I GTAC 2 cut(s) 268, 594
CviAII CATG 4 cut(s) 95, 242, 581, 653
CviQI GTAC 2 cut(s) 268, 594
DdeI CTNAG 5 cut(s) 138, 291, 331, 444, 543
DpnI GATC 4 cut(s) 371, 399, 579, 614
DpnII GATC 4 cut(s) 369, 397, 577, 612
DriI GACNNNNNGTC 1 cut(s) 226
Eam1104I CTCTTC 2 cut(s) 477, 636
Eam1105I GACNNNNNGTC 1 cut(s) 226
EarI CTCTTC 2 cut(s) 477, 636
Eco130I CCWWGG 1 cut(s) 121
Eco24I GRGCYC 1 cut(s) 332
Eco47I GGWCC 2 cut(s) 201, 256
Eco57I CTGAAG 1 cut(s) 593
EcoO109I RGGNCCY 1 cut(s) 256
EcoRI GAATTC 1 cut(s) 20
EcoRII CCWGG 3 cut(s) 103, 145, 251
EcoT14I CCWWGG 1 cut(s) 121
EcoT22I ATGCAT 1 cut(s) 96
EcoT38I GRGCYC 1 cut(s) 332
ErhI CCWWGG 1 cut(s) 121
Esp3I CGTCTC 1 cut(s) 279
FaeI CATG 4 cut(s) 98, 245, 584, 656
FaqI GGGAC 3 cut(s) 127, 269, 374
FatI CATG 4 cut(s) 94, 241, 580, 652
FokI GGATG 3 cut(s) 56, 80, 647
FriOI GRGCYC 1 cut(s) 332
FspBI CTAG 1 cut(s) 587
GsuI CTGGAG 3 cut(s) 126, 235, 324
Hin1II CATG 4 cut(s) 98, 245, 584, 656
HinfI GANTC 5 cut(s) 4, 140, 320, 413, 539
HphI GGTGA 2 cut(s) 44, 122
Hpy166II GTNNAC 4 cut(s) 52, 220, 270, 668
Hpy188I TCNGA 6 cut(s) 294, 325, 334, 397, 544, 612
Hpy188III TCNNGA 5 cut(s) 37, 65, 137, 455, 581
Hpy8I GTNNAC 4 cut(s) 52, 220, 270, 668
HpyAV CCTTC 2 cut(s) 402, 558
HpyCH4III ACNGT 2 cut(s) 598, 665
HpyCH4IV ACGT 1 cut(s) 272
HpyCH4V TGCA 8 cut(s) 71, 94, 241, 282, 345, 557, 638, 668
HpyF10VI GCNNNNNNNGC 2 cut(s) 100, 665
HpyF3I CTNAG 5 cut(s) 138, 291, 331, 444, 543
HpySE526I ACGT 1 cut(s) 272
Hsp92II CATG 4 cut(s) 98, 245, 584, 656
KflI GGGWCCC 1 cut(s) 256
Kzo9I GATC 4 cut(s) 369, 397, 577, 612
LguI GCTCTTC 1 cut(s) 477
LmnI GCTCC 3 cut(s) 85, 305, 649
LweI GCATC 3 cut(s) 58, 81, 625
MaeI CTAG 1 cut(s) 587
MaeII ACGT 1 cut(s) 272
MaeIII GTNAC 1 cut(s) 128
MalI GATC 4 cut(s) 371, 399, 579, 614
MboI GATC 4 cut(s) 369, 397, 577, 612
MboII GAAGA 8 cut(s) 326, 350, 479, 488, 491, 494, 530, 653
MfeI CAATTG 4 cut(s) 407, 462, 552, 558
MhlI GDGCHC 2 cut(s) 332, 670
MluCI AATT 6 cut(s) 20, 407, 462, 490, 552, 558
MlyI GAGTC 3 cut(s) 13, 149, 329
MmeI TCCRAC 2 cut(s) 303, 495
MnlI CCTC 9 cut(s) 33, 76, 144, 256, 319, 375, 517, 625, 649
Mph1103I ATGCAT 1 cut(s) 96
MslI CAYNNNNRTG 1 cut(s) 377
MspR9I CCNGG 3 cut(s) 105, 147, 253
MunI CAATTG 4 cut(s) 407, 462, 552, 558
Mva1269I GAATGC 1 cut(s) 347
MvaI CCWGG 3 cut(s) 105, 147, 253
MwoI GCNNNNNNNGC 2 cut(s) 100, 665
NdeII GATC 4 cut(s) 369, 397, 577, 612
NlaIII CATG 4 cut(s) 98, 245, 584, 656
NlaIV GGNNCC 2 cut(s) 257, 258
NmuCI GTSAC 1 cut(s) 128
NsiI ATGCAT 1 cut(s) 96
NspI RCATGY 2 cut(s) 98, 245
PaeI GCATGC 1 cut(s) 245
PagI TCATGA 1 cut(s) 580
PciSI GCTCTTC 1 cut(s) 477
PctI GAATGC 1 cut(s) 347
PfeI GAWTC 2 cut(s) 413, 539
PleI GAGTC 3 cut(s) 12, 148, 328
PpsI GAGTC 3 cut(s) 12, 148, 328
PpuMI RGGWCCY 1 cut(s) 256
Psp5II RGGWCCY 1 cut(s) 256
Psp6I CCWGG 3 cut(s) 103, 145, 251
PspGI CCWGG 3 cut(s) 103, 145, 251
PspN4I GGNNCC 2 cut(s) 257, 258
PspPI GGNCC 2 cut(s) 201, 256
PspPPI RGGWCCY 1 cut(s) 256
RsaI GTAC 2 cut(s) 269, 595
RsaNI GTAC 2 cut(s) 268, 594
RseI CAYNNNNRTG 1 cut(s) 377
SapI GCTCTTC 1 cut(s) 477
Sau3AI GATC 4 cut(s) 369, 397, 577, 612
Sau96I GGNCC 2 cut(s) 201, 256
SchI GAGTC 3 cut(s) 13, 149, 329
ScrFI CCNGG 3 cut(s) 105, 147, 253
SduI GDGCHC 2 cut(s) 332, 670
SetI ASST 8 cut(s) 90, 211, 275, 310, 450, 588, 592, 609
SfaNI GCATC 3 cut(s) 58, 81, 625
SinI GGWCC 2 cut(s) 201, 256
SmiMI CAYNNNNRTG 1 cut(s) 377
SmlI CTYRAG 1 cut(s) 602
SmoI CTYRAG 1 cut(s) 602
SphI GCATGC 1 cut(s) 245
Sse9I AATT 6 cut(s) 20, 407, 462, 490, 552, 558
SsiI CCGC 1 cut(s) 215
SspMI CTAG 1 cut(s) 587
StyD4I CCNGG 3 cut(s) 103, 145, 251
StyI CCWWGG 1 cut(s) 121
TaaI ACNGT 2 cut(s) 598, 665
TaiI ACGT 1 cut(s) 275
TaqI TCGA 1 cut(s) 36
TasI AATT 6 cut(s) 20, 407, 462, 490, 552, 558
TfiI GAWTC 2 cut(s) 413, 539
TscAI CASTG 5 cut(s) 31, 243, 379, 508, 670
TseFI GTSAC 1 cut(s) 128
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 3 cut(s) 327, 351, 489
TspRI CASTG 5 cut(s) 31, 243, 379, 508, 670
VneI GTGCAC 1 cut(s) 666
VpaK11BI GGWCC 2 cut(s) 201, 256
XapI RAATTY 1 cut(s) 20
XceI RCATGY 2 cut(s) 98, 245
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
XspI CTAG 1 cut(s) 587
Zsp2I ATGCAT 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.