Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0008009

Physical Location & Seq

Genomic Coordinates Forward (+)

5145345 .. 5148284

Gene Structure 2940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00283140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCGGTATTTTTTGGCCTGGAAAAGAAAAATGGCGCTCTAAAGTCTAAACCCCTCAGGTCTAGTAAAACCCTAGAAAATTTGAGAAAGCAAACTCAGTCACGACGAGAGCTCGCTCTTCCCCAGTTCTTCGATCCAACTTCAGAGCCAAGGAGGAAACCTGAGTTAGCAAGCAAAATGGTGGAAGGGATTAGAGACTTCACTGCTATAGTTGAGAGAGATGGTGTTCACCAACCTGTTCTGGATGCGCAGAATGGCGAGGAGCTGATGCATGTTCAGCCTGGTGTTTCTATTGTCCTCGGTAGTCACCCTCCTGAGTCCCCTGGCACTCTTTATATCTCCACCAAGCAAGTGATTTGGTTGAGTGACACTAACAGGGCCAAAGGTTATGCAGTGGACTTCCTGTCTATATCACTGCATGCTGTATCCAGGGACCCAGAGGCGTACACCTCTCCTTGCATATACGCTCAGATTGAAACTGGAGCTGATGAAGATGAGTCAGAGGGCTCAGATTCAGAATGCAATGGTGTTTTAGATCTGTCCAAGATCACAGAAATGAGGCTTGTTCCTTCTGATCCTAACCAATTGGATTCTTTGTTTGATGTATTTTGTGAGTGTGCTGAGCTGAATCCTGAACCAACTGAAGAAAATGAAGAAGAAGAGCATAATTGGATATTTAGTGCTGACCAGTTGGAAGATGAGGCAACAGGAGAAGATTCTGAGCCTTCAATTGTAATTGGGCAATCTAATGGGGGTCATGACCTAGCTCGTACTGTGCTTGAGCTTCAGATCAATGATCAACGCTTTGAGGATGCAGAAGAGATGGAGCATGAGACTGACAGTGCACAGCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Voldacs

Protein Analysis

284

Amino Acids

31.66

Weight (kDa)

4.41

Isoelectric Point (pI)

55.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Voldacs	PF03517	109 - 235	2.2e-27	Regulator of volume decrease after cellular swelling

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62290 AT5G62290
fragaria_vesca	FvH4_7g28050 FvH4_7g28050 FvH4_7g28050 FvH4_7g28050
malus_domestica	MD01G1184800.v1.1 MD07G1257000.v1.1
prunus_persica	Prupe.2G281200_v2.0.a1 Prupe.2G281200_v2.0.a1
pyrus_communis	pycom01g19650 pycom07g22990
rosa_chinensis	RchiOBHm_Chr1g0374961
rosa_laevigata	RLG00000026703
rosa_multiflora	Rmu_sc0020425.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283140
rosa_rugosa	Rorug01G0386400 Rorug01G0386400 Rorug01G0386500
rosa_samantha	Rh1AG397600 Rh1BG361600 Rh1CG375200 Rh1DG392600
rosa_wichuraiana	Rw1G035280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	249
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	2 cut(s)	128, 569
AcsI	RAATTY	1 cut(s)	79
AcuI	CTGAAG	3 cut(s)	126, 663, 770
AfaI	GTAC	2 cut(s)	446, 772
AfeI	AGCGCT	1 cut(s)	851
AgsI	TTSAA	2 cut(s)	476, 729
AhdI	GACNNNNNGTC	1 cut(s)	403
AjnI	CCWGG	4 cut(s)	18, 280, 322, 428
AluBI	AGCT	6 cut(s)	112, 265, 485, 625, 767, 784
AluI	AGCT	6 cut(s)	112, 265, 485, 625, 767, 784
Alw21I	GWGCWC	2 cut(s)	114, 847
Alw26I	GTCTC	2 cut(s)	189, 827
Alw44I	GTGCAC	1 cut(s)	843
AlwI	GGATC	2 cut(s)	128, 569
Aor51HI	AGCGCT	1 cut(s)	851
AoxI	GGCC	2 cut(s)	16, 378
ApaLI	GTGCAC	1 cut(s)	843
ApoI	RAATTY	1 cut(s)	79
AspLEI	GCGC	3 cut(s)	38, 250, 852
AspS9I	GGNCC	2 cut(s)	378, 433
AsuHPI	GGTGA	2 cut(s)	221, 299
AvaII	GGWCC	1 cut(s)	433
AxyI	CCTNAGG	1 cut(s)	56
BaeGI	GKGCMC	1 cut(s)	847
BanII	GRGCYC	2 cut(s)	114, 509
Bbv12I	GWGCWC	2 cut(s)	114, 847
BccI	CCATC	2 cut(s)	215, 817
BciT130I	CCWGG	4 cut(s)	20, 282, 324, 430
BciVI	GTATCC	1 cut(s)	436
BclI	TGATCA	1 cut(s)	796
BcoDI	GTCTC	2 cut(s)	189, 827
BfaI	CTAG	3 cut(s)	63, 74, 764
BfmI	CTRYAG	1 cut(s)	207
BfoI	RGCGCY	2 cut(s)	39, 853
BfuI	GTATCC	1 cut(s)	436
BglII	AGATCT	1 cut(s)	535
BlpI	GCTNAGC	1 cut(s)	621
Bme1390I	CCNGG	4 cut(s)	20, 282, 324, 430
Bme18I	GGWCC	1 cut(s)	433
BmeRI	GACNNNNNGTC	1 cut(s)	403
BmgT120I	GGNCC	2 cut(s)	378, 433
BmiI	GGNNCC	2 cut(s)	434, 435
BmrFI	CCNGG	4 cut(s)	20, 282, 324, 430
BmrI	ACTGGG	1 cut(s)	118
BmsI	GCATC	3 cut(s)	235, 258, 802
BmuI	ACTGGG	1 cut(s)	118
BpmI	CTGGAG	1 cut(s)	501
Bpu1102I	GCTNAGC	1 cut(s)	621
BpuEI	CTTGAG	1 cut(s)	800
BsaJI	CCNNGG	4 cut(s)	149, 298, 322, 429
Bse1I	ACTGG	3 cut(s)	124, 484, 688
Bse21I	CCTNAGG	1 cut(s)	56
Bse3DI	GCAATG	1 cut(s)	529
BseBI	CCWGG	4 cut(s)	20, 282, 324, 430
BseDI	CCNNGG	4 cut(s)	149, 298, 322, 429
BseGI	GGATG	2 cut(s)	250, 817
BseMI	GCAATG	1 cut(s)	529
BseMII	CTCAG	8 cut(s)	70, 110, 153, 306, 482, 522, 612, 711
BseNI	ACTGG	3 cut(s)	124, 484, 688
BseRI	GAGGAG	1 cut(s)	275
BseSI	GKGCMC	1 cut(s)	847
BshFI	GGCC	2 cut(s)	18, 380
BsiHKAI	GWGCWC	2 cut(s)	114, 847
BslFI	GGGAC	2 cut(s)	304, 446
BsmAI	GTCTC	2 cut(s)	189, 827
BsmFI	GGGAC	2 cut(s)	304, 446
BsmI	GAATGC	1 cut(s)	524
BsnI	GGCC	2 cut(s)	18, 380
Bsp1286I	GDGCHC	3 cut(s)	114, 509, 847
Bsp143I	GATC	6 cut(s)	133, 535, 546, 574, 789, 796
Bsp1720I	GCTNAGC	1 cut(s)	621
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	2 cut(s)	18, 380
BspCNI	CTCAG	8 cut(s)	69, 109, 154, 307, 481, 521, 613, 712
BspHI	TCATGA	1 cut(s)	757
BspLI	GGNNCC	2 cut(s)	434, 435
BspPI	GGATC	2 cut(s)	128, 569
BspQI	GCTCTTC	2 cut(s)	123, 654
BsrDI	GCAATG	1 cut(s)	529
BsrI	ACTGG	3 cut(s)	124, 484, 688
BssECI	CCNNGG	4 cut(s)	149, 298, 322, 429
BssMI	GATC	6 cut(s)	133, 535, 546, 574, 789, 796
BssT1I	CCWWGG	1 cut(s)	149
Bst2UI	CCWGG	4 cut(s)	20, 282, 324, 430
Bst4CI	ACNGT	2 cut(s)	775, 842
Bst6I	CTCTTC	3 cut(s)	123, 654, 813
BstC8I	GCNNGC	3 cut(s)	114, 172, 420
BstDEI	CTNAG	8 cut(s)	56, 96, 162, 315, 468, 508, 621, 720
BstF5I	GGATG	2 cut(s)	250, 817
BstH2I	RGCGCY	2 cut(s)	39, 853
BstHHI	GCGC	3 cut(s)	38, 250, 852
BstKTI	GATC	6 cut(s)	136, 538, 549, 577, 792, 799
BstMAI	GTCTC	2 cut(s)	189, 827
BstMBI	GATC	6 cut(s)	133, 535, 546, 574, 789, 796
BstMWI	GCNNNNNNNGC	1 cut(s)	277
BstNI	CCWGG	4 cut(s)	20, 282, 324, 430
BstNSI	RCATGY	2 cut(s)	275, 422
BstSCI	CCNGG	4 cut(s)	18, 280, 322, 428
BstSFI	CTRYAG	1 cut(s)	207
BstSLI	GKGCMC	1 cut(s)	847
BstX2I	RGATCY	1 cut(s)	535
BstYI	RGATCY	1 cut(s)	535
Bsu36I	CCTNAGG	1 cut(s)	56
BsuI	GTATCC	1 cut(s)	436
BsuRI	GGCC	2 cut(s)	18, 380
BtsCI	GGATG	2 cut(s)	250, 817
BtsI	GCAGTG	3 cut(s)	201, 399, 413
BtsIMutI	CAGTG	4 cut(s)	201, 399, 413, 847
Cac8I	GCNNGC	3 cut(s)	114, 172, 420
CciI	TCATGA	1 cut(s)	757
CfoI	GCGC	3 cut(s)	38, 250, 852
Cfr13I	GGNCC	2 cut(s)	378, 433
Csp6I	GTAC	2 cut(s)	445, 771
CviAII	CATG	4 cut(s)	272, 419, 758, 830
CviQI	GTAC	2 cut(s)	445, 771
DdeI	CTNAG	8 cut(s)	56, 96, 162, 315, 468, 508, 621, 720
DpnI	GATC	6 cut(s)	135, 537, 548, 576, 791, 798
DpnII	GATC	6 cut(s)	133, 535, 546, 574, 789, 796
DriI	GACNNNNNGTC	1 cut(s)	403
Eam1104I	CTCTTC	3 cut(s)	123, 654, 813
Eam1105I	GACNNNNNGTC	1 cut(s)	403
EarI	CTCTTC	3 cut(s)	123, 654, 813
Ecl136II	GAGCTC	1 cut(s)	112
Eco130I	CCWWGG	1 cut(s)	149
Eco24I	GRGCYC	2 cut(s)	114, 509
Eco47I	GGWCC	1 cut(s)	433
Eco47III	AGCGCT	1 cut(s)	851
Eco53kI	GAGCTC	1 cut(s)	112
Eco57I	CTGAAG	3 cut(s)	126, 663, 770
Eco81I	CCTNAGG	1 cut(s)	56
EcoICRI	GAGCTC	1 cut(s)	112
EcoO109I	RGGNCCY	1 cut(s)	433
EcoRII	CCWGG	4 cut(s)	18, 280, 322, 428
EcoT14I	CCWWGG	1 cut(s)	149
EcoT22I	ATGCAT	1 cut(s)	273
EcoT38I	GRGCYC	2 cut(s)	114, 509
ErhI	CCWWGG	1 cut(s)	149
FaeI	CATG	4 cut(s)	275, 422, 761, 833
FaqI	GGGAC	2 cut(s)	304, 446
FatI	CATG	4 cut(s)	271, 418, 757, 829
FbaI	TGATCA	1 cut(s)	796
FokI	GGATG	2 cut(s)	257, 824
FriOI	GRGCYC	2 cut(s)	114, 509
FspBI	CTAG	3 cut(s)	63, 74, 764
FspI	TGCGCA	1 cut(s)	249
GlaI	GCGC	3 cut(s)	37, 249, 851
GsuI	CTGGAG	1 cut(s)	501
HaeII	RGCGCY	2 cut(s)	39, 853
HaeIII	GGCC	2 cut(s)	18, 380
HhaI	GCGC	3 cut(s)	38, 250, 852
Hin1II	CATG	4 cut(s)	275, 422, 761, 833
Hin6I	GCGC	3 cut(s)	36, 248, 850
HinP1I	GCGC	3 cut(s)	36, 248, 850
HinfI	GANTC	6 cut(s)	317, 497, 512, 590, 628, 716
HphI	GGTGA	2 cut(s)	221, 299
Hpy166II	GTNNAC	4 cut(s)	229, 397, 447, 845
Hpy188I	TCNGA	8 cut(s)	145, 471, 502, 511, 517, 574, 721, 789
Hpy188III	TCNNGA	5 cut(s)	102, 242, 314, 632, 758
Hpy8I	GTNNAC	4 cut(s)	229, 397, 447, 845
Hpy99I	CGWCG	1 cut(s)	108
HpyAV	CCTTC	3 cut(s)	179, 579, 735
HpyCH4III	ACNGT	2 cut(s)	775, 842
HpyCH4V	TGCA	7 cut(s)	271, 392, 418, 459, 522, 815, 845
HpyF10VI	GCNNNNNNNGC	1 cut(s)	277
HpyF3I	CTNAG	8 cut(s)	56, 96, 162, 315, 468, 508, 621, 720
Hsp92II	CATG	4 cut(s)	275, 422, 761, 833
HspAI	GCGC	3 cut(s)	36, 248, 850
KflI	GGGWCCC	1 cut(s)	433
Ksp22I	TGATCA	1 cut(s)	796
Kzo9I	GATC	6 cut(s)	133, 535, 546, 574, 789, 796
LguI	GCTCTTC	2 cut(s)	123, 654
LmnI	GCTCC	3 cut(s)	262, 482, 826
LweI	GCATC	3 cut(s)	235, 258, 802
MaeI	CTAG	3 cut(s)	63, 74, 764
MaeIII	GTNAC	3 cut(s)	99, 305, 365
MalI	GATC	6 cut(s)	135, 537, 548, 576, 791, 798
MboI	GATC	6 cut(s)	133, 535, 546, 574, 789, 796
MfeI	CAATTG	2 cut(s)	584, 729
MflI	RGATCY	1 cut(s)	535
MhlI	GDGCHC	3 cut(s)	114, 509, 847
MluCI	AATT	5 cut(s)	79, 584, 667, 729, 735
MlyI	GAGTC	2 cut(s)	326, 506
MmeI	TCCRAC	2 cut(s)	161, 672
Mph1103I	ATGCAT	1 cut(s)	273
MslI	CAYNNNNRTG	1 cut(s)	554
MspR9I	CCNGG	4 cut(s)	20, 282, 324, 430
MunI	CAATTG	2 cut(s)	584, 729
Mva1269I	GAATGC	1 cut(s)	524
MvaI	CCWGG	4 cut(s)	20, 282, 324, 430
MwoI	GCNNNNNNNGC	1 cut(s)	277
NdeII	GATC	6 cut(s)	133, 535, 546, 574, 789, 796
NlaIII	CATG	4 cut(s)	275, 422, 761, 833
NlaIV	GGNNCC	2 cut(s)	434, 435
NmuCI	GTSAC	3 cut(s)	99, 305, 365
NsbI	TGCGCA	1 cut(s)	249
NsiI	ATGCAT	1 cut(s)	273
NspI	RCATGY	2 cut(s)	275, 422
PaeI	GCATGC	1 cut(s)	422
PagI	TCATGA	1 cut(s)	757
PciSI	GCTCTTC	2 cut(s)	123, 654
PctI	GAATGC	1 cut(s)	524
PfeI	GAWTC	4 cut(s)	512, 590, 628, 716
PleI	GAGTC	2 cut(s)	325, 505
PpsI	GAGTC	2 cut(s)	325, 505
PpuMI	RGGWCCY	1 cut(s)	433
Psp124BI	GAGCTC	1 cut(s)	114
Psp5II	RGGWCCY	1 cut(s)	433
Psp6I	CCWGG	4 cut(s)	18, 280, 322, 428
PspGI	CCWGG	4 cut(s)	18, 280, 322, 428
PspN4I	GGNNCC	2 cut(s)	434, 435
PspPI	GGNCC	2 cut(s)	378, 433
PspPPI	RGGWCCY	1 cut(s)	433
PsuI	RGATCY	1 cut(s)	535
RsaI	GTAC	2 cut(s)	446, 772
RsaNI	GTAC	2 cut(s)	445, 771
RseI	CAYNNNNRTG	1 cut(s)	554
SacI	GAGCTC	1 cut(s)	114
SapI	GCTCTTC	2 cut(s)	123, 654
Sau3AI	GATC	6 cut(s)	133, 535, 546, 574, 789, 796
Sau96I	GGNCC	2 cut(s)	378, 433
SchI	GAGTC	2 cut(s)	326, 506
ScrFI	CCNGG	4 cut(s)	20, 282, 324, 430
SduI	GDGCHC	3 cut(s)	114, 509, 847
SfaNI	GCATC	3 cut(s)	235, 258, 802
SfcI	CTRYAG	1 cut(s)	207
SinI	GGWCC	1 cut(s)	433
SmiMI	CAYNNNNRTG	1 cut(s)	554
SmlI	CTYRAG	1 cut(s)	779
SmoI	CTYRAG	1 cut(s)	779
SphI	GCATGC	1 cut(s)	422
Sse9I	AATT	5 cut(s)	79, 584, 667, 729, 735
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	3 cut(s)	63, 74, 764
SstI	GAGCTC	1 cut(s)	114
StyD4I	CCNGG	4 cut(s)	18, 280, 322, 428
StyI	CCWWGG	1 cut(s)	149
TaaI	ACNGT	2 cut(s)	775, 842
TaqI	TCGA	1 cut(s)	132
TasI	AATT	5 cut(s)	79, 584, 667, 729, 735
TfiI	GAWTC	4 cut(s)	512, 590, 628, 716
TscAI	CASTG	4 cut(s)	208, 399, 420, 847
TseFI	GTSAC	3 cut(s)	99, 305, 365
Tsp45I	GTSAC	3 cut(s)	99, 305, 365
TspDTI	ATGAA	2 cut(s)	504, 666
TspRI	CASTG	4 cut(s)	208, 399, 420, 847
VneI	GTGCAC	1 cut(s)	843
VpaK11BI	GGWCC	1 cut(s)	433
XapI	RAATTY	1 cut(s)	79
XceI	RCATGY	2 cut(s)	275, 422
XspI	CTAG	3 cut(s)	63, 74, 764
Zsp2I	ATGCAT	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.