Rh1CG375200

Chloride conductance regulatory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0008009
Physical Location & Seq
Reverse (-)
64415726 .. 64418951
3226 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG375200.1

Sequence Viewer

Length: 633 bp
ATGGTGGGAGGGATTAGAGACTTCACTGCTATAGTCGAGAGAGATGGTGTTCACCAACCTGTTCTGGATGCGCAGAATGGCGAGGAGCTGATGCATGTTCAGCCTGGTGTTTCTATTGTCCTTGGTAGTCACCCTCCTGAGTCCCCTGGCACTCTCTATATCTCCACCAAGCAAGTGATTTGGTTGAGTGACACTAACAGGGCCAAAGGTTATGCGGTGGACTTCCTGTCTATATCACTGCATGCTGTATCCAGGGACCCAGAGGCATACACCTCTCCTTGCATATACGCTCAGATTGAAACTGGAGCTGATGAAGATGAGTCAGAGGGCTCAGATTCAGAATGCAATGGTGTTTTAGATCTGTCCAAGATCACAGAAATGAGGCTTGTTCCTTCCGATCCTAACCAATTGGATTCTTTGTTTGATGTTTTTTGTGAGTGTGCTGAGCTGAATCCTGAACCAACTGAAGAAAATGAAGAAGAAGAGCATAATTGGATATTTAGTGCTGACCAGTTGGAAGATGAGGCAACAGGAGAAGATTCTGAGCCTTCAATTGCAATTGGGCAATCTAATGGGGATCATGACCTAGCTCGTACTGTGCTTGAGGTAACCCGTGAATATTCATTTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
Voldacs

Protein Analysis

210

Amino Acids

23.05

Weight (kDa)

4.05

Isoelectric Point (pI)

48.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Voldacs PF03517 50 - 176 1e-27 Regulator of volume decrease after cellular swelling
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 72
AciI CCGC 1 cut(s) 215
AclWI GGATC 2 cut(s) 392, 585
AcuI CTGAAG 1 cut(s) 486
AfaI GTAC 1 cut(s) 595
AgsI TTSAA 2 cut(s) 299, 552
AhdI GACNNNNNGTC 1 cut(s) 226
AjnI CCWGG 3 cut(s) 103, 145, 251
AluBI AGCT 4 cut(s) 88, 308, 448, 590
AluI AGCT 4 cut(s) 88, 308, 448, 590
Alw26I GTCTC 1 cut(s) 12
AlwI GGATC 2 cut(s) 392, 585
AoxI GGCC 1 cut(s) 201
AspLEI GCGC 1 cut(s) 73
AspS9I GGNCC 2 cut(s) 201, 256
AsuHPI GGTGA 2 cut(s) 44, 122
AvaII GGWCC 1 cut(s) 256
BanII GRGCYC 1 cut(s) 332
BccI CCATC 1 cut(s) 38
BciT130I CCWGG 3 cut(s) 105, 147, 253
BciVI GTATCC 1 cut(s) 259
BcoDI GTCTC 1 cut(s) 12
BfaI CTAG 1 cut(s) 587
BfmI CTRYAG 1 cut(s) 30
BfuI GTATCC 1 cut(s) 259
BglII AGATCT 1 cut(s) 358
BlpI GCTNAGC 1 cut(s) 444
Bme1390I CCNGG 3 cut(s) 105, 147, 253
Bme18I GGWCC 1 cut(s) 256
BmeRI GACNNNNNGTC 1 cut(s) 226
BmgT120I GGNCC 2 cut(s) 201, 256
BmiI GGNNCC 2 cut(s) 257, 258
BmrFI CCNGG 3 cut(s) 105, 147, 253
BmsI GCATC 2 cut(s) 58, 81
BpmI CTGGAG 1 cut(s) 324
Bpu1102I GCTNAGC 1 cut(s) 444
BpuEI CTTGAG 1 cut(s) 623
BsaJI CCNNGG 3 cut(s) 121, 145, 252
Bse1I ACTGG 2 cut(s) 307, 511
Bse3DI GCAATG 1 cut(s) 352
BseBI CCWGG 3 cut(s) 105, 147, 253
BseDI CCNNGG 3 cut(s) 121, 145, 252
BseGI GGATG 1 cut(s) 73
BseMI GCAATG 1 cut(s) 352
BseMII CTCAG 5 cut(s) 129, 305, 345, 435, 534
BseNI ACTGG 2 cut(s) 307, 511
BseRI GAGGAG 1 cut(s) 98
BshFI GGCC 1 cut(s) 203
BslFI GGGAC 2 cut(s) 127, 269
BsmAI GTCTC 1 cut(s) 12
BsmFI GGGAC 2 cut(s) 127, 269
BsmI GAATGC 1 cut(s) 347
BsnI GGCC 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 332
Bsp143I GATC 4 cut(s) 358, 369, 397, 577
Bsp1720I GCTNAGC 1 cut(s) 444
BspACI CCGC 1 cut(s) 215
BspANI GGCC 1 cut(s) 203
BspCNI CTCAG 5 cut(s) 130, 304, 344, 436, 535
BspHI TCATGA 1 cut(s) 580
BspLI GGNNCC 2 cut(s) 257, 258
BspPI GGATC 2 cut(s) 392, 585
BspQI GCTCTTC 1 cut(s) 477
BsrDI GCAATG 1 cut(s) 352
BsrI ACTGG 2 cut(s) 307, 511
BssECI CCNNGG 3 cut(s) 121, 145, 252
BssMI GATC 4 cut(s) 358, 369, 397, 577
BssT1I CCWWGG 1 cut(s) 121
Bst2UI CCWGG 3 cut(s) 105, 147, 253
Bst4CI ACNGT 1 cut(s) 598
Bst6I CTCTTC 1 cut(s) 477
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 5 cut(s) 138, 291, 331, 444, 543
BstEII GGTNACC 1 cut(s) 607
BstF5I GGATG 1 cut(s) 73
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 4 cut(s) 361, 372, 400, 580
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 4 cut(s) 358, 369, 397, 577
BstMWI GCNNNNNNNGC 1 cut(s) 100
BstNI CCWGG 3 cut(s) 105, 147, 253
BstNSI RCATGY 2 cut(s) 98, 245
BstPI GGTNACC 1 cut(s) 607
BstSCI CCNGG 3 cut(s) 103, 145, 251
BstSFI CTRYAG 1 cut(s) 30
BstX2I RGATCY 1 cut(s) 358
BstYI RGATCY 1 cut(s) 358
BsuI GTATCC 1 cut(s) 259
BsuRI GGCC 1 cut(s) 203
BtsCI GGATG 1 cut(s) 73
BtsI GCAGTG 2 cut(s) 24, 236
BtsIMutI CAGTG 2 cut(s) 24, 236
Cac8I GCNNGC 1 cut(s) 243
CciI TCATGA 1 cut(s) 580
CfoI GCGC 1 cut(s) 73
Cfr13I GGNCC 2 cut(s) 201, 256
Csp6I GTAC 1 cut(s) 594
CviAII CATG 3 cut(s) 95, 242, 581
CviJI RGCY 9 cut(s) 88, 103, 203, 308, 330, 385, 448, 547, 590
CviKI_1 RGCY 9 cut(s) 88, 103, 203, 308, 330, 385, 448, 547, 590
CviQI GTAC 1 cut(s) 594
DdeI CTNAG 5 cut(s) 138, 291, 331, 444, 543
DpnI GATC 4 cut(s) 360, 371, 399, 579
DpnII GATC 4 cut(s) 358, 369, 397, 577
DriI GACNNNNNGTC 1 cut(s) 226
Eam1104I CTCTTC 1 cut(s) 477
Eam1105I GACNNNNNGTC 1 cut(s) 226
EarI CTCTTC 1 cut(s) 477
Eco130I CCWWGG 1 cut(s) 121
Eco24I GRGCYC 1 cut(s) 332
Eco47I GGWCC 1 cut(s) 256
Eco57I CTGAAG 1 cut(s) 486
Eco91I GGTNACC 1 cut(s) 607
EcoO109I RGGNCCY 1 cut(s) 256
EcoO65I GGTNACC 1 cut(s) 607
EcoRII CCWGG 3 cut(s) 103, 145, 251
EcoT14I CCWWGG 1 cut(s) 121
EcoT22I ATGCAT 1 cut(s) 96
EcoT38I GRGCYC 1 cut(s) 332
ErhI CCWWGG 1 cut(s) 121
FaeI CATG 3 cut(s) 98, 245, 584
FaqI GGGAC 2 cut(s) 127, 269
FatI CATG 3 cut(s) 94, 241, 580
FokI GGATG 1 cut(s) 80
FriOI GRGCYC 1 cut(s) 332
FspBI CTAG 1 cut(s) 587
FspI TGCGCA 1 cut(s) 72
GlaI GCGC 1 cut(s) 72
GsuI CTGGAG 1 cut(s) 324
HaeIII GGCC 1 cut(s) 203
HhaI GCGC 1 cut(s) 73
Hin1II CATG 3 cut(s) 98, 245, 584
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HinfI GANTC 6 cut(s) 140, 320, 335, 413, 451, 539
HphI GGTGA 2 cut(s) 44, 122
Hpy166II GTNNAC 2 cut(s) 52, 220
Hpy188I TCNGA 6 cut(s) 294, 325, 334, 340, 397, 544
Hpy188III TCNNGA 5 cut(s) 37, 65, 137, 455, 581
Hpy8I GTNNAC 2 cut(s) 52, 220
HpyAV CCTTC 2 cut(s) 402, 558
HpyCH4III ACNGT 1 cut(s) 598
HpyCH4V TGCA 5 cut(s) 94, 241, 282, 345, 557
HpyF10VI GCNNNNNNNGC 1 cut(s) 100
HpyF3I CTNAG 5 cut(s) 138, 291, 331, 444, 543
Hsp92II CATG 3 cut(s) 98, 245, 584
HspAI GCGC 1 cut(s) 71
KflI GGGWCCC 1 cut(s) 256
Kzo9I GATC 4 cut(s) 358, 369, 397, 577
LguI GCTCTTC 1 cut(s) 477
LmnI GCTCC 2 cut(s) 85, 305
LweI GCATC 2 cut(s) 58, 81
MaeI CTAG 1 cut(s) 587
MaeIII GTNAC 3 cut(s) 128, 188, 607
MalI GATC 4 cut(s) 360, 371, 399, 579
MboI GATC 4 cut(s) 358, 369, 397, 577
MboII GAAGA 7 cut(s) 326, 479, 488, 491, 494, 530, 548
MfeI CAATTG 3 cut(s) 407, 552, 558
MflI RGATCY 1 cut(s) 358
MhlI GDGCHC 1 cut(s) 332
MluCI AATT 4 cut(s) 407, 490, 552, 558
MlyI GAGTC 2 cut(s) 149, 329
MmeI TCCRAC 1 cut(s) 495
MnlI CCTC 8 cut(s) 76, 144, 256, 283, 319, 375, 517, 598
Mph1103I ATGCAT 1 cut(s) 96
MslI CAYNNNNRTG 1 cut(s) 377
MspR9I CCNGG 3 cut(s) 105, 147, 253
MunI CAATTG 3 cut(s) 407, 552, 558
Mva1269I GAATGC 1 cut(s) 347
MvaI CCWGG 3 cut(s) 105, 147, 253
MwoI GCNNNNNNNGC 1 cut(s) 100
NdeII GATC 4 cut(s) 358, 369, 397, 577
NlaIII CATG 3 cut(s) 98, 245, 584
NlaIV GGNNCC 2 cut(s) 257, 258
NmuCI GTSAC 2 cut(s) 128, 188
NsbI TGCGCA 1 cut(s) 72
NsiI ATGCAT 1 cut(s) 96
NspI RCATGY 2 cut(s) 98, 245
PaeI GCATGC 1 cut(s) 245
PagI TCATGA 1 cut(s) 580
PciSI GCTCTTC 1 cut(s) 477
PctI GAATGC 1 cut(s) 347
PfeI GAWTC 4 cut(s) 335, 413, 451, 539
PleI GAGTC 2 cut(s) 148, 328
PpsI GAGTC 2 cut(s) 148, 328
PpuMI RGGWCCY 1 cut(s) 256
Psp5II RGGWCCY 1 cut(s) 256
Psp6I CCWGG 3 cut(s) 103, 145, 251
PspEI GGTNACC 1 cut(s) 607
PspGI CCWGG 3 cut(s) 103, 145, 251
PspN4I GGNNCC 2 cut(s) 257, 258
PspPI GGNCC 2 cut(s) 201, 256
PspPPI RGGWCCY 1 cut(s) 256
PsuI RGATCY 1 cut(s) 358
RsaI GTAC 1 cut(s) 595
RsaNI GTAC 1 cut(s) 594
RseI CAYNNNNRTG 1 cut(s) 377
SapI GCTCTTC 1 cut(s) 477
Sau3AI GATC 4 cut(s) 358, 369, 397, 577
Sau96I GGNCC 2 cut(s) 201, 256
SchI GAGTC 2 cut(s) 149, 329
ScrFI CCNGG 3 cut(s) 105, 147, 253
SduI GDGCHC 1 cut(s) 332
SetI ASST 9 cut(s) 61, 90, 211, 275, 310, 450, 588, 592, 609
SfaNI GCATC 2 cut(s) 58, 81
SfcI CTRYAG 1 cut(s) 30
SinI GGWCC 1 cut(s) 256
SmiMI CAYNNNNRTG 1 cut(s) 377
SmlI CTYRAG 1 cut(s) 602
SmoI CTYRAG 1 cut(s) 602
SphI GCATGC 1 cut(s) 245
Sse9I AATT 4 cut(s) 407, 490, 552, 558
SsiI CCGC 1 cut(s) 215
SspI AATATT 1 cut(s) 620
SspMI CTAG 1 cut(s) 587
StyD4I CCNGG 3 cut(s) 103, 145, 251
StyI CCWWGG 1 cut(s) 121
TaaI ACNGT 1 cut(s) 598
TaqI TCGA 1 cut(s) 36
TasI AATT 4 cut(s) 407, 490, 552, 558
TfiI GAWTC 4 cut(s) 335, 413, 451, 539
TscAI CASTG 2 cut(s) 31, 243
TseFI GTSAC 2 cut(s) 128, 188
Tsp45I GTSAC 2 cut(s) 128, 188
TspDTI ATGAA 3 cut(s) 327, 489, 612
TspRI CASTG 2 cut(s) 31, 243
VpaK11BI GGWCC 1 cut(s) 256
XceI RCATGY 2 cut(s) 98, 245
XspI CTAG 1 cut(s) 587
Zsp2I ATGCAT 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.