Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0008009

Physical Location & Seq

Genomic Coordinates Reverse (-)

27996190 .. 27999070

Gene Structure 2881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G281200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGTGGCAGGGCTTAGAGAGTTCACTGCAAGAGTTGAAAGAAATGGTGTTGACGAACCAGTTCTGGATGCAGAGAATGGTGAGGAGCTGATGCACGTTCAGCCTTGTGTTTCTATCGTCCTTGGTAATCGCCCTCCTGAGTCCCCTGGCACTCTCTACATCTCCACCAAGAAAGTGGTCTGGTTGAGTGATGTTGACAGGGCGAAAGGTTATGCTGTGGACTTCTTGTCTATATCACTGCATGCTGTATCCAGGGACCCAGAGGCCTACACCTCTCCTTGTATATACACTCAGATTGAAACTGAGGATGACGAGCATGAGTCCGATGGCTCAGATTCAGAATGCAATGGTGTCTTAGATTTGTCCAAGATCACAGAAATGAGGCTTGTTCCTTCAGATCCTAACCAATTGGATTCTCTGTTTGAGGTATTTTGCGAGTGTGCTGAGCTTAATCCTGAACCGATTGAAGAAGAGGAAGAAGAGCATAATTGGATTTTTAGTGCTGATCAGTTGGAAGATGACGCAACAGGGGAAGATTCTGAGTGGCATGTTTCTGAAAATCCTTCAATTGGTCAATCTAATGGGGATCATGACCTAGCTCGTACCGTGCTTGAGCTTCAAATCAATGATCAACGCTTTGAGGATGCTGAAGAAATGGAGCATGAAAATGATGGTGGCCGCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Voldacs

Protein Analysis

229

Amino Acids

25.58

Weight (kDa)

4.1

Isoelectric Point (pI)

52.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62290 AT5G62290
fragaria_vesca	FvH4_7g28050 FvH4_7g28050 FvH4_7g28050 FvH4_7g28050
malus_domestica	MD01G1184800.v1.1 MD07G1257000.v1.1
prunus_persica	Prupe.2G281200_v2.0.a1 Prupe.2G281200_v2.0.a1
pyrus_communis	pycom01g19650 pycom07g22990
rosa_chinensis	RchiOBHm_Chr1g0374961
rosa_laevigata	RLG00000026703
rosa_multiflora	Rmu_sc0020425.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283140
rosa_rugosa	Rorug01G0386400 Rorug01G0386400 Rorug01G0386500
rosa_samantha	Rh1AG397600 Rh1BG361600 Rh1CG375200 Rh1DG392600
rosa_wichuraiana	Rw1G035280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	679
AclWI	GGATC	2 cut(s)	392, 594
AcoI	YGGCCR	1 cut(s)	676
AcuI	CTGAAG	2 cut(s)	378, 669
AfaI	GTAC	1 cut(s)	604
AfiI	CCNNNNNNNGG	1 cut(s)	569
AgsI	TTSAA	5 cut(s)	38, 299, 467, 567, 620
AhdI	GACNNNNNGTC	1 cut(s)	226
AjnI	CCWGG	2 cut(s)	145, 251
AluBI	AGCT	4 cut(s)	88, 448, 599, 616
AluI	AGCT	4 cut(s)	88, 448, 599, 616
AlwI	GGATC	2 cut(s)	392, 594
AoxI	GGCC	2 cut(s)	264, 676
Asp700I	GAANNNNTTC	1 cut(s)	60
AspS9I	GGNCC	1 cut(s)	256
AsuHPI	GGTGA	1 cut(s)	92
AvaII	GGWCC	1 cut(s)	256
BccI	CCATC	2 cut(s)	320, 665
BciT130I	CCWGG	2 cut(s)	147, 253
BciVI	GTATCC	1 cut(s)	259
BclI	TGATCA	2 cut(s)	505, 628
BfaI	CTAG	1 cut(s)	596
BfuI	GTATCC	1 cut(s)	259
BisI	GCNGC	1 cut(s)	679
BlpI	GCTNAGC	1 cut(s)	444
BlsI	GCNGC	1 cut(s)	680
Bme1390I	CCNGG	2 cut(s)	147, 253
Bme18I	GGWCC	1 cut(s)	256
BmeRI	GACNNNNNGTC	1 cut(s)	226
BmgT120I	GGNCC	1 cut(s)	256
BmiI	GGNNCC	2 cut(s)	257, 258
BmrFI	CCNGG	2 cut(s)	147, 253
BmsI	GCATC	3 cut(s)	58, 81, 634
Bpu1102I	GCTNAGC	1 cut(s)	444
BpuEI	CTTGAG	1 cut(s)	632
BsaJI	CCNNGG	3 cut(s)	121, 145, 252
Bsc4I	CCNNNNNNNGG	1 cut(s)	569
Bse1I	ACTGG	1 cut(s)	59
Bse3DI	GCAATG	1 cut(s)	352
BseBI	CCWGG	2 cut(s)	147, 253
BseDI	CCNNGG	3 cut(s)	121, 145, 252
BseGI	GGATG	3 cut(s)	73, 313, 649
BseLI	CCNNNNNNNGG	1 cut(s)	569
BseMI	GCAATG	1 cut(s)	352
BseMII	CTCAG	6 cut(s)	129, 294, 305, 345, 435, 531
BseNI	ACTGG	1 cut(s)	59
BseRI	GAGGAG	1 cut(s)	98
BshFI	GGCC	2 cut(s)	266, 678
BslFI	GGGAC	2 cut(s)	127, 269
BslI	CCNNNNNNNGG	1 cut(s)	569
BsmFI	GGGAC	2 cut(s)	127, 269
BsmI	GAATGC	1 cut(s)	347
BsnI	GGCC	2 cut(s)	266, 678
Bsp143I	GATC	5 cut(s)	369, 397, 505, 586, 628
Bsp1720I	GCTNAGC	1 cut(s)	444
BspACI	CCGC	1 cut(s)	679
BspANI	GGCC	2 cut(s)	266, 678
BspCNI	CTCAG	6 cut(s)	130, 295, 304, 344, 436, 532
BspHI	TCATGA	1 cut(s)	589
BspLI	GGNNCC	2 cut(s)	257, 258
BspPI	GGATC	2 cut(s)	392, 594
BspQI	GCTCTTC	1 cut(s)	474
BsrDI	GCAATG	1 cut(s)	352
BsrI	ACTGG	1 cut(s)	59
BssECI	CCNNGG	3 cut(s)	121, 145, 252
BssMI	GATC	5 cut(s)	369, 397, 505, 586, 628
BssT1I	CCWWGG	1 cut(s)	121
Bst2UI	CCWGG	2 cut(s)	147, 253
Bst4CI	ACNGT	1 cut(s)	607
Bst6I	CTCTTC	2 cut(s)	465, 474
BstC8I	GCNNGC	1 cut(s)	243
BstDEI	CTNAG	8 cut(s)	14, 138, 291, 303, 331, 355, 444, 540
BstF5I	GGATG	3 cut(s)	73, 313, 649
BstKTI	GATC	5 cut(s)	372, 400, 508, 589, 631
BstMBI	GATC	5 cut(s)	369, 397, 505, 586, 628
BstMWI	GCNNNNNNNGC	1 cut(s)	100
BstNI	CCWGG	2 cut(s)	147, 253
BstNSI	RCATGY	2 cut(s)	245, 551
BstSCI	CCNGG	2 cut(s)	145, 251
BstX2I	RGATCY	1 cut(s)	397
BstXI	CCANNNNNNTGG	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	397
BsuI	GTATCC	1 cut(s)	259
BsuRI	GGCC	2 cut(s)	266, 678
BtsCI	GGATG	3 cut(s)	73, 313, 649
BtsI	GCAGTG	2 cut(s)	24, 236
BtsIMutI	CAGTG	2 cut(s)	24, 236
Cac8I	GCNNGC	1 cut(s)	243
CciI	TCATGA	1 cut(s)	589
Cfr13I	GGNCC	1 cut(s)	256
CseI	GACGC	1 cut(s)	530
Csp6I	GTAC	1 cut(s)	603
CviAII	CATG	5 cut(s)	242, 317, 548, 590, 662
CviQI	GTAC	1 cut(s)	603
DdeI	CTNAG	8 cut(s)	14, 138, 291, 303, 331, 355, 444, 540
DpnI	GATC	5 cut(s)	371, 399, 507, 588, 630
DpnII	GATC	5 cut(s)	369, 397, 505, 586, 628
DriI	GACNNNNNGTC	1 cut(s)	226
EaeI	YGGCCR	1 cut(s)	676
Eam1104I	CTCTTC	2 cut(s)	465, 474
Eam1105I	GACNNNNNGTC	1 cut(s)	226
EarI	CTCTTC	2 cut(s)	465, 474
Eco130I	CCWWGG	1 cut(s)	121
Eco147I	AGGCCT	1 cut(s)	266
Eco47I	GGWCC	1 cut(s)	256
Eco57I	CTGAAG	2 cut(s)	378, 669
EcoO109I	RGGNCCY	1 cut(s)	256
EcoRII	CCWGG	2 cut(s)	145, 251
EcoT14I	CCWWGG	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	121
FaeI	CATG	5 cut(s)	245, 320, 551, 593, 665
FaqI	GGGAC	2 cut(s)	127, 269
FatI	CATG	5 cut(s)	241, 316, 547, 589, 661
FbaI	TGATCA	2 cut(s)	505, 628
Fnu4HI	GCNGC	1 cut(s)	679
FokI	GGATG	3 cut(s)	80, 320, 656
Fsp4HI	GCNGC	1 cut(s)	679
FspBI	CTAG	1 cut(s)	596
GluI	GCNGC	1 cut(s)	679
HaeIII	GGCC	2 cut(s)	266, 678
HgaI	GACGC	1 cut(s)	530
Hin1II	CATG	5 cut(s)	245, 320, 551, 593, 665
HincII	GTYRAC	2 cut(s)	52, 196
HindII	GTYRAC	2 cut(s)	52, 196
HinfI	GANTC	5 cut(s)	140, 320, 335, 413, 536
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	4 cut(s)	24, 52, 196, 220
Hpy188I	TCNGA	7 cut(s)	294, 325, 334, 340, 397, 541, 556
Hpy188III	TCNNGA	4 cut(s)	65, 137, 455, 590
Hpy8I	GTNNAC	4 cut(s)	24, 52, 196, 220
HpyAV	CCTTC	2 cut(s)	402, 573
HpyCH4III	ACNGT	1 cut(s)	607
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	5 cut(s)	29, 71, 94, 241, 345
HpyF10VI	GCNNNNNNNGC	1 cut(s)	100
HpyF3I	CTNAG	8 cut(s)	14, 138, 291, 303, 331, 355, 444, 540
HpySE526I	ACGT	1 cut(s)	96
Hsp92II	CATG	5 cut(s)	245, 320, 551, 593, 665
KflI	GGGWCCC	1 cut(s)	256
Ksp22I	TGATCA	2 cut(s)	505, 628
Kzo9I	GATC	5 cut(s)	369, 397, 505, 586, 628
LguI	GCTCTTC	1 cut(s)	474
LmnI	GCTCC	2 cut(s)	85, 658
LweI	GCATC	3 cut(s)	58, 81, 634
MaeI	CTAG	1 cut(s)	596
MaeII	ACGT	1 cut(s)	96
MalI	GATC	5 cut(s)	371, 399, 507, 588, 630
MboI	GATC	5 cut(s)	369, 397, 505, 586, 628
MboII	GAAGA	7 cut(s)	479, 482, 488, 491, 527, 545, 662
MfeI	CAATTG	2 cut(s)	407, 567
MflI	RGATCY	1 cut(s)	397
MluCI	AATT	3 cut(s)	407, 487, 567
MlyI	GAGTC	2 cut(s)	149, 329
MmeI	TCCRAC	1 cut(s)	492
MnlI	CCTC	9 cut(s)	76, 144, 256, 283, 298, 375, 418, 466, 634
MroXI	GAANNNNTTC	1 cut(s)	60
MseI	TTAA	1 cut(s)	450
MslI	CAYNNNNRTG	2 cut(s)	377, 666
MspR9I	CCNGG	2 cut(s)	147, 253
MunI	CAATTG	2 cut(s)	407, 567
Mva1269I	GAATGC	1 cut(s)	347
MvaI	CCWGG	2 cut(s)	147, 253
MwoI	GCNNNNNNNGC	1 cut(s)	100
NdeII	GATC	5 cut(s)	369, 397, 505, 586, 628
NlaIII	CATG	5 cut(s)	245, 320, 551, 593, 665
NlaIV	GGNNCC	2 cut(s)	257, 258
NspI	RCATGY	2 cut(s)	245, 551
PaeI	GCATGC	1 cut(s)	245
PagI	TCATGA	1 cut(s)	589
PceI	AGGCCT	1 cut(s)	266
PciSI	GCTCTTC	1 cut(s)	474
PctI	GAATGC	1 cut(s)	347
PdmI	GAANNNNTTC	1 cut(s)	60
PfeI	GAWTC	3 cut(s)	335, 413, 536
PkrI	GCNGC	1 cut(s)	680
PleI	GAGTC	2 cut(s)	148, 328
PpsI	GAGTC	2 cut(s)	148, 328
PpuMI	RGGWCCY	1 cut(s)	256
Psp5II	RGGWCCY	1 cut(s)	256
Psp6I	CCWGG	2 cut(s)	145, 251
PspGI	CCWGG	2 cut(s)	145, 251
PspN4I	GGNNCC	2 cut(s)	257, 258
PspPI	GGNCC	1 cut(s)	256
PspPPI	RGGWCCY	1 cut(s)	256
PsuI	RGATCY	1 cut(s)	397
RsaI	GTAC	1 cut(s)	604
RsaNI	GTAC	1 cut(s)	603
RseI	CAYNNNNRTG	2 cut(s)	377, 666
SapI	GCTCTTC	1 cut(s)	474
SaqAI	TTAA	1 cut(s)	450
SatI	GCNGC	1 cut(s)	679
Sau3AI	GATC	5 cut(s)	369, 397, 505, 586, 628
Sau96I	GGNCC	1 cut(s)	256
SchI	GAGTC	2 cut(s)	149, 329
ScrFI	CCNGG	2 cut(s)	147, 253
SetI	ASST	9 cut(s)	90, 99, 211, 275, 429, 450, 597, 601, 618
SfaNI	GCATC	3 cut(s)	58, 81, 634
SinI	GGWCC	1 cut(s)	256
SmiMI	CAYNNNNRTG	2 cut(s)	377, 666
SmlI	CTYRAG	1 cut(s)	611
SmoI	CTYRAG	1 cut(s)	611
SphI	GCATGC	1 cut(s)	245
Sse9I	AATT	3 cut(s)	407, 487, 567
SseBI	AGGCCT	1 cut(s)	266
SsiI	CCGC	1 cut(s)	679
SspMI	CTAG	1 cut(s)	596
StuI	AGGCCT	1 cut(s)	266
StyD4I	CCNGG	2 cut(s)	145, 251
StyI	CCWWGG	1 cut(s)	121
TaaI	ACNGT	1 cut(s)	607
TaiI	ACGT	1 cut(s)	99
TasI	AATT	3 cut(s)	407, 487, 567
TauI	GCSGC	1 cut(s)	681
TfiI	GAWTC	3 cut(s)	335, 413, 536
Tru1I	TTAA	1 cut(s)	450
Tru9I	TTAA	1 cut(s)	450
TscAI	CASTG	2 cut(s)	31, 243
TspDTI	ATGAA	1 cut(s)	678
TspRI	CASTG	2 cut(s)	31, 243
VpaK11BI	GGWCC	1 cut(s)	256
XceI	RCATGY	2 cut(s)	245, 551
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172
XmnI	GAANNNNTTC	1 cut(s)	60
XspI	CTAG	1 cut(s)	596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.