Rh1BG361600

Chloride conductance regulatory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0008009
Physical Location & Seq
Reverse (-)
49153761 .. 49156517
2757 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG361600.1

Sequence Viewer

Length: 474 bp
ATGGTGGAAGGGATTAGAGACTTCACTGCTATAGTCGAGAGAGATGGTGTTCACCAACCTGTTCTGGATGCGCAGAATGGCGAGGAGCTGATGCATGTTCAGCCTGGTGTTTCTATTGTCCTTGGTAGTCACCCTCCTGAGTCCCCTGGCACTCTCTATATCTCCACCAAGCAAGTGATTTGGTTGAGTGACACTAACAGGGCCAAAGGTTATGCGGTGGACTTCCTGTCTATATCACTGCATGCTGTATCCAGGGACCCAGAGGCGTACACCTCTCCTTGCATATATGCTCAGATTGAAACTGGAGCTGATGAAGATGAATCAGAGGGCTCAGATTCAGAATGCAATGGTGTTTTAGATCTGTCCAAGATCACAGAAATGAGGCTTGTTCCTTCCGATCCTAACCAATTGGATTCTTTGTTTGAAGTATTTTGTGAGTGTGCTGAGCTGAATCCTGAACCAACTGAAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
Voldacs

Protein Analysis

157

Amino Acids

17.11

Weight (kDa)

4.14

Isoelectric Point (pI)

44.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Voldacs PF03517 50 - 155 7.2e-25 Regulator of volume decrease after cellular swelling
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 72
AciI CCGC 1 cut(s) 215
AclWI GGATC 1 cut(s) 392
AfaI GTAC 1 cut(s) 269
AfiI CCNNNNNNNGG 1 cut(s) 467
AgsI TTSAA 2 cut(s) 299, 425
AhdI GACNNNNNGTC 1 cut(s) 226
AjnI CCWGG 3 cut(s) 103, 145, 251
AluBI AGCT 3 cut(s) 88, 308, 448
AluI AGCT 3 cut(s) 88, 308, 448
Alw26I GTCTC 1 cut(s) 12
AlwI GGATC 1 cut(s) 392
AoxI GGCC 1 cut(s) 201
AspLEI GCGC 1 cut(s) 73
AspS9I GGNCC 2 cut(s) 201, 256
AsuHPI GGTGA 2 cut(s) 44, 122
AvaII GGWCC 1 cut(s) 256
BanII GRGCYC 1 cut(s) 332
BccI CCATC 1 cut(s) 38
BciT130I CCWGG 3 cut(s) 105, 147, 253
BciVI GTATCC 1 cut(s) 259
BcoDI GTCTC 1 cut(s) 12
BfmI CTRYAG 1 cut(s) 30
BfuI GTATCC 1 cut(s) 259
BglII AGATCT 1 cut(s) 358
BlpI GCTNAGC 1 cut(s) 444
Bme1390I CCNGG 3 cut(s) 105, 147, 253
Bme18I GGWCC 1 cut(s) 256
BmeRI GACNNNNNGTC 1 cut(s) 226
BmgT120I GGNCC 2 cut(s) 201, 256
BmiI GGNNCC 2 cut(s) 257, 258
BmrFI CCNGG 3 cut(s) 105, 147, 253
BmsI GCATC 2 cut(s) 58, 81
BpmI CTGGAG 1 cut(s) 324
Bpu1102I GCTNAGC 1 cut(s) 444
BsaJI CCNNGG 3 cut(s) 121, 145, 252
Bsc4I CCNNNNNNNGG 1 cut(s) 467
Bse1I ACTGG 1 cut(s) 307
Bse3DI GCAATG 1 cut(s) 352
BseBI CCWGG 3 cut(s) 105, 147, 253
BseDI CCNNGG 3 cut(s) 121, 145, 252
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 467
BseMI GCAATG 1 cut(s) 352
BseMII CTCAG 4 cut(s) 129, 305, 345, 435
BseNI ACTGG 1 cut(s) 307
BseRI GAGGAG 1 cut(s) 98
BshFI GGCC 1 cut(s) 203
BslFI GGGAC 2 cut(s) 127, 269
BslI CCNNNNNNNGG 1 cut(s) 467
BsmAI GTCTC 1 cut(s) 12
BsmFI GGGAC 2 cut(s) 127, 269
BsmI GAATGC 1 cut(s) 347
BsnI GGCC 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 332
Bsp143I GATC 3 cut(s) 358, 369, 397
Bsp1720I GCTNAGC 1 cut(s) 444
BspACI CCGC 1 cut(s) 215
BspANI GGCC 1 cut(s) 203
BspCNI CTCAG 4 cut(s) 130, 304, 344, 436
BspLI GGNNCC 2 cut(s) 257, 258
BspPI GGATC 1 cut(s) 392
BsrDI GCAATG 1 cut(s) 352
BsrI ACTGG 1 cut(s) 307
BssECI CCNNGG 3 cut(s) 121, 145, 252
BssMI GATC 3 cut(s) 358, 369, 397
BssT1I CCWWGG 1 cut(s) 121
Bst2UI CCWGG 3 cut(s) 105, 147, 253
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 4 cut(s) 138, 291, 331, 444
BstF5I GGATG 1 cut(s) 73
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 3 cut(s) 361, 372, 400
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 3 cut(s) 358, 369, 397
BstMWI GCNNNNNNNGC 1 cut(s) 100
BstNI CCWGG 3 cut(s) 105, 147, 253
BstNSI RCATGY 2 cut(s) 98, 245
BstSCI CCNGG 3 cut(s) 103, 145, 251
BstSFI CTRYAG 1 cut(s) 30
BstX2I RGATCY 1 cut(s) 358
BstYI RGATCY 1 cut(s) 358
BsuI GTATCC 1 cut(s) 259
BsuRI GGCC 1 cut(s) 203
BtsCI GGATG 1 cut(s) 73
BtsI GCAGTG 2 cut(s) 24, 236
BtsIMutI CAGTG 2 cut(s) 24, 236
Cac8I GCNNGC 1 cut(s) 243
CfoI GCGC 1 cut(s) 73
Cfr13I GGNCC 2 cut(s) 201, 256
Csp6I GTAC 1 cut(s) 268
CviAII CATG 2 cut(s) 95, 242
CviJI RGCY 7 cut(s) 88, 103, 203, 308, 330, 385, 448
CviKI_1 RGCY 7 cut(s) 88, 103, 203, 308, 330, 385, 448
CviQI GTAC 1 cut(s) 268
DdeI CTNAG 4 cut(s) 138, 291, 331, 444
DpnI GATC 3 cut(s) 360, 371, 399
DpnII GATC 3 cut(s) 358, 369, 397
DriI GACNNNNNGTC 1 cut(s) 226
Eam1105I GACNNNNNGTC 1 cut(s) 226
Eco130I CCWWGG 1 cut(s) 121
Eco24I GRGCYC 1 cut(s) 332
Eco47I GGWCC 1 cut(s) 256
EcoO109I RGGNCCY 1 cut(s) 256
EcoRII CCWGG 3 cut(s) 103, 145, 251
EcoT14I CCWWGG 1 cut(s) 121
EcoT22I ATGCAT 1 cut(s) 96
EcoT38I GRGCYC 1 cut(s) 332
ErhI CCWWGG 1 cut(s) 121
FaeI CATG 2 cut(s) 98, 245
FaiI YATR 9 cut(s) 32, 96, 159, 213, 233, 243, 284, 286, 288
FaqI GGGAC 2 cut(s) 127, 269
FatI CATG 2 cut(s) 94, 241
FokI GGATG 1 cut(s) 80
FriOI GRGCYC 1 cut(s) 332
FspI TGCGCA 1 cut(s) 72
GlaI GCGC 1 cut(s) 72
GsuI CTGGAG 1 cut(s) 324
HaeIII GGCC 1 cut(s) 203
HhaI GCGC 1 cut(s) 73
Hin1II CATG 2 cut(s) 98, 245
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HinfI GANTC 5 cut(s) 140, 320, 335, 413, 451
HphI GGTGA 2 cut(s) 44, 122
Hpy166II GTNNAC 3 cut(s) 52, 220, 270
Hpy188I TCNGA 5 cut(s) 294, 325, 334, 340, 397
Hpy188III TCNNGA 4 cut(s) 37, 65, 137, 455
Hpy8I GTNNAC 3 cut(s) 52, 220, 270
HpyAV CCTTC 2 cut(s) 402, 461
HpyCH4V TGCA 4 cut(s) 94, 241, 282, 345
HpyF10VI GCNNNNNNNGC 1 cut(s) 100
HpyF3I CTNAG 4 cut(s) 138, 291, 331, 444
Hsp92II CATG 2 cut(s) 98, 245
HspAI GCGC 1 cut(s) 71
KflI GGGWCCC 1 cut(s) 256
Kzo9I GATC 3 cut(s) 358, 369, 397
LmnI GCTCC 2 cut(s) 85, 305
LweI GCATC 2 cut(s) 58, 81
MaeIII GTNAC 2 cut(s) 128, 188
MalI GATC 3 cut(s) 360, 371, 399
MboI GATC 3 cut(s) 358, 369, 397
MboII GAAGA 1 cut(s) 326
MfeI CAATTG 1 cut(s) 407
MflI RGATCY 1 cut(s) 358
MhlI GDGCHC 1 cut(s) 332
MluCI AATT 1 cut(s) 407
MlyI GAGTC 1 cut(s) 149
MnlI CCTC 6 cut(s) 76, 144, 256, 283, 319, 375
Mph1103I ATGCAT 1 cut(s) 96
MslI CAYNNNNRTG 1 cut(s) 377
MspR9I CCNGG 3 cut(s) 105, 147, 253
MunI CAATTG 1 cut(s) 407
Mva1269I GAATGC 1 cut(s) 347
MvaI CCWGG 3 cut(s) 105, 147, 253
MwoI GCNNNNNNNGC 1 cut(s) 100
NdeII GATC 3 cut(s) 358, 369, 397
NlaIII CATG 2 cut(s) 98, 245
NlaIV GGNNCC 2 cut(s) 257, 258
NmuCI GTSAC 2 cut(s) 128, 188
NsbI TGCGCA 1 cut(s) 72
NsiI ATGCAT 1 cut(s) 96
NspI RCATGY 2 cut(s) 98, 245
PaeI GCATGC 1 cut(s) 245
PctI GAATGC 1 cut(s) 347
PfeI GAWTC 4 cut(s) 320, 335, 413, 451
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
PpuMI RGGWCCY 1 cut(s) 256
Psp5II RGGWCCY 1 cut(s) 256
Psp6I CCWGG 3 cut(s) 103, 145, 251
PspGI CCWGG 3 cut(s) 103, 145, 251
PspN4I GGNNCC 2 cut(s) 257, 258
PspPI GGNCC 2 cut(s) 201, 256
PspPPI RGGWCCY 1 cut(s) 256
PsuI RGATCY 1 cut(s) 358
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
RseI CAYNNNNRTG 1 cut(s) 377
Sau3AI GATC 3 cut(s) 358, 369, 397
Sau96I GGNCC 2 cut(s) 201, 256
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 3 cut(s) 105, 147, 253
SduI GDGCHC 1 cut(s) 332
SetI ASST 7 cut(s) 61, 90, 211, 275, 310, 450, 472
SfaNI GCATC 2 cut(s) 58, 81
SfcI CTRYAG 1 cut(s) 30
SinI GGWCC 1 cut(s) 256
SmiMI CAYNNNNRTG 1 cut(s) 377
SphI GCATGC 1 cut(s) 245
Sse9I AATT 1 cut(s) 407
SsiI CCGC 1 cut(s) 215
StyD4I CCNGG 3 cut(s) 103, 145, 251
StyI CCWWGG 1 cut(s) 121
TaqI TCGA 1 cut(s) 36
TasI AATT 1 cut(s) 407
TfiI GAWTC 4 cut(s) 320, 335, 413, 451
TscAI CASTG 2 cut(s) 31, 243
TseFI GTSAC 2 cut(s) 128, 188
Tsp45I GTSAC 2 cut(s) 128, 188
TspDTI ATGAA 2 cut(s) 327, 333
TspRI CASTG 2 cut(s) 31, 243
VpaK11BI GGWCC 1 cut(s) 256
XceI RCATGY 2 cut(s) 98, 245
Zsp2I ATGCAT 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.