Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0008009

Physical Location & Seq

Genomic Coordinates Reverse (-)

18260452 .. 18262064

Gene Structure 1613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g19650.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGTAGCAGGGATTAAAGAATTCACTGCTCGAGTTGAAAGAAACGGTGTTGATGAACCAGTTCTGGATGCGGTGAATGGTGAGGAGCTGATGCACGTTCAGCCTGGTGTTTCTATTGTCCTCGGTAATCAGCCCTCTGAGTTCCCTGGCACTCTATATATCTCCACCAAGCAAGTGATTTGGTTGAGTGACACTGACAAGGCGAAAGGTTATGCGGTGGACTTCTTGTCTATATCACTGCACGCTGTATCCAGAGACCCAGAGGCCTACACCTCTCCTTGTTTATACACTCAGATTGAAACTGAGGATGACGAGGATGAGTCTGATGGTTCGGATTCAGAACGCAATGGTGACTTAGATTTATCCAAGGTCACAGAGATGAGGCTCGTTCCTTCAGATCCTAACCAGTTGGATTCTCTGTTTGAGGTATTTTGCGAGTGTGCTGAGCTTAATCCAGAACCAATTCAAGGGGAAGAAGAGCATAATTGGATTTTTAGCGCCGATCAGTTGGAAGATGAGGCAGTTGGGGACGATTCTGAGTGGCCTGTTCTTCAAAATCCTTCAAACTCAATTGGTCAATCTAATGGGGATCATGACCTAGCTCATACCGTGCTTGAGCTTCAGATCAACGATCAACGCTTTGAGGATGCAGAAGAAATGGAGCATGAGACCAACAATGGCCGCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Voldacs

Protein Analysis

230

Amino Acids

25.52

Weight (kDa)

4.05

Isoelectric Point (pI)

40.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62290 AT5G62290
fragaria_vesca	FvH4_7g28050 FvH4_7g28050 FvH4_7g28050 FvH4_7g28050
malus_domestica	MD01G1184800.v1.1 MD07G1257000.v1.1
prunus_persica	Prupe.2G281200_v2.0.a1 Prupe.2G281200_v2.0.a1
pyrus_communis	pycom01g19650 pycom07g22990
rosa_chinensis	RchiOBHm_Chr1g0374961
rosa_laevigata	RLG00000026703
rosa_multiflora	Rmu_sc0020425.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283140
rosa_rugosa	Rorug01G0386400 Rorug01G0386400 Rorug01G0386500
rosa_samantha	Rh1AG397600 Rh1BG361600 Rh1CG375200 Rh1DG392600
rosa_wichuraiana	Rw1G035280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	71, 215, 682
AclWI	GGATC	2 cut(s)	392, 597
AcoI	YGGCCR	1 cut(s)	679
AcsI	RAATTY	1 cut(s)	20
AcuI	CTGAAG	2 cut(s)	378, 605
AfiI	CCNNNNNNNGG	1 cut(s)	467
AgsI	TTSAA	5 cut(s)	38, 299, 467, 554, 564
AhdI	GACNNNNNGTC	1 cut(s)	226
AjnI	CCWGG	2 cut(s)	103, 145
AluBI	AGCT	4 cut(s)	88, 448, 602, 619
AluI	AGCT	4 cut(s)	88, 448, 602, 619
Alw26I	GTCTC	2 cut(s)	249, 662
AlwI	GGATC	2 cut(s)	392, 597
Ama87I	CYCGRG	1 cut(s)	30
AoxI	GGCC	3 cut(s)	264, 542, 679
ApoI	RAATTY	1 cut(s)	20
Asp700I	GAANNNNTTC	2 cut(s)	60, 462
AspLEI	GCGC	1 cut(s)	500
AsuHPI	GGTGA	3 cut(s)	85, 92, 362
AvaI	CYCGRG	1 cut(s)	30
BccI	CCATC	1 cut(s)	320
BciT130I	CCWGG	2 cut(s)	105, 147
BciVI	GTATCC	1 cut(s)	259
BcoDI	GTCTC	2 cut(s)	249, 662
BfaI	CTAG	1 cut(s)	599
BfoI	RGCGCY	1 cut(s)	501
BfuI	GTATCC	1 cut(s)	259
BisI	GCNGC	1 cut(s)	682
BlpI	GCTNAGC	1 cut(s)	444
BlsI	GCNGC	1 cut(s)	683
Bme1390I	CCNGG	2 cut(s)	105, 147
BmeRI	GACNNNNNGTC	1 cut(s)	226
BmeT110I	CYCGRG	1 cut(s)	30
BmrFI	CCNGG	2 cut(s)	105, 147
BmsI	GCATC	3 cut(s)	58, 81, 637
Bpu1102I	GCTNAGC	1 cut(s)	444
BpuEI	CTTGAG	1 cut(s)	635
BsaI	GGTCTC	2 cut(s)	249, 662
BsaJI	CCNNGG	3 cut(s)	121, 145, 366
Bsc4I	CCNNNNNNNGG	1 cut(s)	467
Bse1I	ACTGG	2 cut(s)	59, 406
Bse3DI	GCAATG	1 cut(s)	352
BseBI	CCWGG	2 cut(s)	105, 147
BseDI	CCNNGG	3 cut(s)	121, 145, 366
BseGI	GGATG	4 cut(s)	73, 313, 322, 652
BseLI	CCNNNNNNNGG	1 cut(s)	467
BseMI	GCAATG	1 cut(s)	352
BseMII	CTCAG	5 cut(s)	129, 294, 305, 435, 528
BseNI	ACTGG	2 cut(s)	59, 406
BseRI	GAGGAG	1 cut(s)	98
BsgI	GTGCAG	1 cut(s)	224
BshFI	GGCC	3 cut(s)	266, 544, 681
BsiHKCI	CYCGRG	1 cut(s)	30
BslFI	GGGAC	1 cut(s)	542
BslI	CCNNNNNNNGG	1 cut(s)	467
BsmAI	GTCTC	2 cut(s)	249, 662
BsmFI	GGGAC	1 cut(s)	542
BsnI	GGCC	3 cut(s)	266, 544, 681
Bso31I	GGTCTC	2 cut(s)	249, 662
BsoBI	CYCGRG	1 cut(s)	30
Bsp143I	GATC	5 cut(s)	397, 502, 589, 624, 631
Bsp1720I	GCTNAGC	1 cut(s)	444
BspACI	CCGC	3 cut(s)	71, 215, 682
BspANI	GGCC	3 cut(s)	266, 544, 681
BspCNI	CTCAG	5 cut(s)	130, 295, 304, 436, 529
BspHI	TCATGA	1 cut(s)	592
BspPI	GGATC	2 cut(s)	392, 597
BspQI	GCTCTTC	1 cut(s)	471
BspTNI	GGTCTC	2 cut(s)	249, 662
BsrDI	GCAATG	1 cut(s)	352
BsrI	ACTGG	2 cut(s)	59, 406
BssECI	CCNNGG	3 cut(s)	121, 145, 366
BssMI	GATC	5 cut(s)	397, 502, 589, 624, 631
BssT1I	CCWWGG	1 cut(s)	366
Bst2UI	CCWGG	2 cut(s)	105, 147
Bst4CI	ACNGT	2 cut(s)	47, 610
Bst6I	CTCTTC	1 cut(s)	471
BstC8I	GCNNGC	1 cut(s)	243
BstDEI	CTNAG	6 cut(s)	138, 291, 303, 355, 444, 537
BstF5I	GGATG	4 cut(s)	73, 313, 322, 652
BstH2I	RGCGCY	1 cut(s)	501
BstHHI	GCGC	1 cut(s)	500
BstKTI	GATC	5 cut(s)	400, 505, 592, 627, 634
BstMAI	GTCTC	2 cut(s)	249, 662
BstMBI	GATC	5 cut(s)	397, 502, 589, 624, 631
BstMWI	GCNNNNNNNGC	1 cut(s)	100
BstNI	CCWGG	2 cut(s)	105, 147
BstSCI	CCNGG	2 cut(s)	103, 145
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
BsuI	GTATCC	1 cut(s)	259
BsuRI	GGCC	3 cut(s)	266, 544, 681
BtsCI	GGATG	4 cut(s)	73, 313, 322, 652
BtsI	GCAGTG	2 cut(s)	24, 236
BtsIMutI	CAGTG	3 cut(s)	24, 192, 236
Cac8I	GCNNGC	1 cut(s)	243
CciI	TCATGA	1 cut(s)	592
CfoI	GCGC	1 cut(s)	500
CviAII	CATG	2 cut(s)	593, 665
DdeI	CTNAG	6 cut(s)	138, 291, 303, 355, 444, 537
DpnI	GATC	5 cut(s)	399, 504, 591, 626, 633
DpnII	GATC	5 cut(s)	397, 502, 589, 624, 631
DriI	GACNNNNNGTC	1 cut(s)	226
EaeI	YGGCCR	1 cut(s)	679
Eam1104I	CTCTTC	1 cut(s)	471
Eam1105I	GACNNNNNGTC	1 cut(s)	226
EarI	CTCTTC	1 cut(s)	471
Eco130I	CCWWGG	1 cut(s)	366
Eco147I	AGGCCT	1 cut(s)	266
Eco31I	GGTCTC	2 cut(s)	249, 662
Eco57I	CTGAAG	2 cut(s)	378, 605
Eco88I	CYCGRG	1 cut(s)	30
EcoRI	GAATTC	1 cut(s)	20
EcoRII	CCWGG	2 cut(s)	103, 145
EcoT14I	CCWWGG	1 cut(s)	366
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	2 cut(s)	596, 668
FaiI	YATR	9 cut(s)	157, 159, 213, 233, 286, 483, 594, 606, 666
FaqI	GGGAC	1 cut(s)	542
FatI	CATG	2 cut(s)	592, 664
Fnu4HI	GCNGC	1 cut(s)	682
FokI	GGATG	4 cut(s)	80, 320, 329, 659
Fsp4HI	GCNGC	1 cut(s)	682
FspBI	CTAG	1 cut(s)	599
GlaI	GCGC	1 cut(s)	499
GluI	GCNGC	1 cut(s)	682
HaeII	RGCGCY	1 cut(s)	501
HaeIII	GGCC	3 cut(s)	266, 544, 681
HhaI	GCGC	1 cut(s)	500
Hin1II	CATG	2 cut(s)	596, 668
Hin6I	GCGC	1 cut(s)	498
HinP1I	GCGC	1 cut(s)	498
HinfI	GANTC	4 cut(s)	320, 335, 413, 533
HphI	GGTGA	3 cut(s)	85, 92, 362
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	8 cut(s)	139, 294, 325, 334, 340, 397, 538, 624
Hpy188III	TCNNGA	4 cut(s)	65, 252, 455, 593
Hpy8I	GTNNAC	1 cut(s)	220
HpyAV	CCTTC	2 cut(s)	402, 570
HpyCH4III	ACNGT	2 cut(s)	47, 610
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	3 cut(s)	94, 241, 650
HpyF10VI	GCNNNNNNNGC	1 cut(s)	100
HpyF3I	CTNAG	6 cut(s)	138, 291, 303, 355, 444, 537
HpySE526I	ACGT	1 cut(s)	96
Hsp92II	CATG	2 cut(s)	596, 668
HspAI	GCGC	1 cut(s)	498
Kzo9I	GATC	5 cut(s)	397, 502, 589, 624, 631
LguI	GCTCTTC	1 cut(s)	471
LmnI	GCTCC	2 cut(s)	85, 661
LweI	GCATC	3 cut(s)	58, 81, 637
MaeI	CTAG	1 cut(s)	599
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	3 cut(s)	188, 350, 370
MalI	GATC	5 cut(s)	399, 504, 591, 626, 633
MboI	GATC	5 cut(s)	397, 502, 589, 624, 631
MboII	GAAGA	5 cut(s)	485, 488, 524, 542, 665
MfeI	CAATTG	1 cut(s)	570
MflI	RGATCY	1 cut(s)	397
MluCI	AATT	4 cut(s)	20, 462, 484, 570
MlyI	GAGTC	1 cut(s)	329
MmeI	TCCRAC	2 cut(s)	390, 489
MroXI	GAANNNNTTC	2 cut(s)	60, 462
MseI	TTAA	3 cut(s)	15, 450, 688
MslI	CAYNNNNRTG	1 cut(s)	377
MspR9I	CCNGG	2 cut(s)	105, 147
MunI	CAATTG	1 cut(s)	570
MvaI	CCWGG	2 cut(s)	105, 147
MwoI	GCNNNNNNNGC	1 cut(s)	100
NdeII	GATC	5 cut(s)	397, 502, 589, 624, 631
NlaIII	CATG	2 cut(s)	596, 668
NmuCI	GTSAC	3 cut(s)	188, 350, 370
PaeR7I	CTCGAG	1 cut(s)	30
PagI	TCATGA	1 cut(s)	592
PceI	AGGCCT	1 cut(s)	266
PciSI	GCTCTTC	1 cut(s)	471
PdmI	GAANNNNTTC	2 cut(s)	60, 462
PfeI	GAWTC	3 cut(s)	335, 413, 533
PkrI	GCNGC	1 cut(s)	683
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
Psp6I	CCWGG	2 cut(s)	103, 145
PspGI	CCWGG	2 cut(s)	103, 145
PspXI	VCTCGAGB	1 cut(s)	30
PsuI	RGATCY	1 cut(s)	397
RseI	CAYNNNNRTG	1 cut(s)	377
SapI	GCTCTTC	1 cut(s)	471
SaqAI	TTAA	3 cut(s)	15, 450, 688
SatI	GCNGC	1 cut(s)	682
Sau3AI	GATC	5 cut(s)	397, 502, 589, 624, 631
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	2 cut(s)	105, 147
SfaNI	GCATC	3 cut(s)	58, 81, 637
Sfr274I	CTCGAG	1 cut(s)	30
SlaI	CTCGAG	1 cut(s)	30
SmiMI	CAYNNNNRTG	1 cut(s)	377
SmlI	CTYRAG	2 cut(s)	30, 614
SmoI	CTYRAG	2 cut(s)	30, 614
Sse9I	AATT	4 cut(s)	20, 462, 484, 570
SseBI	AGGCCT	1 cut(s)	266
SsiI	CCGC	3 cut(s)	71, 215, 682
SspMI	CTAG	1 cut(s)	599
StuI	AGGCCT	1 cut(s)	266
StyD4I	CCNGG	2 cut(s)	103, 145
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	2 cut(s)	47, 610
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	1 cut(s)	31
TasI	AATT	4 cut(s)	20, 462, 484, 570
TauI	GCSGC	1 cut(s)	684
TfiI	GAWTC	3 cut(s)	335, 413, 533
Tru1I	TTAA	3 cut(s)	15, 450, 688
Tru9I	TTAA	3 cut(s)	15, 450, 688
TscAI	CASTG	3 cut(s)	31, 199, 243
TseFI	GTSAC	3 cut(s)	188, 350, 370
Tsp45I	GTSAC	3 cut(s)	188, 350, 370
TspDTI	ATGAA	1 cut(s)	69
TspRI	CASTG	3 cut(s)	31, 199, 243
XapI	RAATTY	1 cut(s)	20
XhoI	CTCGAG	1 cut(s)	30
XmnI	GAANNNNTTC	2 cut(s)	60, 462
XspI	CTAG	1 cut(s)	599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.