Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0011483

Physical Location & Seq

Genomic Coordinates Forward (+)

21049725 .. 21055129

Gene Structure 5405 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g28410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2043 bp

ATGCCTTCCATTGACGTCTCCGATTACGTGCTGGAGGCTCCGAAGAAGGAGAAGAAGATGAAAAAGTCGAAAAAGGAGCTGGCCGTAACCGACTCTCCGATTAGTAGTAGCAAGAAGGAGTCAAAGCTTAAGAAGCGGAAGGCTGTTGATATGGACGATGAGGAAGACAGGAGCGAGACCAGCTCCGAGCTCGGCGACCCCGTCAATCACACCAAGCCCAACGGCGATTCGGCGGTGGAGAAGAGCAAGAAGAAATCCAAGAAGGCCAAGGTGGAGGAGGCTGAGGAGGAGGAGAAGGTTGTGGTGAAGGCGGACGATCCGAATGCGGTGACCAAGTTTCGGATTTCGGCTCCGTTGAGGGCTAAGCTGAAGGAGAAGGGGATTGAAGCCTTGTTTTCCATTCAGGCCATGACGTTCGATACCATCTTGGACGGGTCGGACCTTGTCGGCCGGGCTCGCACCGGTCAGGGTAAAACTCTGGCGTTTGTGCTGCCGATATTGGAGTCGTTAATAAATGGCTCTGCTAAGGAATTTAGAAAGACCGGATACGGCAGAGCCCCGACTGTTATTGTGCTCTTACCCACTAGGGAGCTGGCCAAGCAGGTGTTTGCGGACTTCGAGTTTTATGGTGGGGCTGTGGGGATAACAGCCTGCTGTGTGTATGGTGGATCTCCGTACGCGACTCAGGAATATAAGTTGAAGAGAGGGGTTGATGTCATTGTGGGAACTCCTGGTCGTATCAAGGATCATATTGAGAGGGGAAATATAGACTTGAGCACTTTGAAGTTTCGGATACTTGATGAAGCTGATGAAATGCTGAGGATGGGTTTTGTTGACGATGTTGAACAAATTCTAGGCAAGGTCAAAGATGTTACTAAAGTTCAAACGCTTCTGTTCAGCGCAACCTTGCCCTCTTGGGTGCAAAATATTTCCAAAAGGTTTCTTAAATCAGATAAGAAAACTGTAGATCTAGTTGGTAATGAAAAGATGAAGGCCAGCATCAATGTTAGGCATATAGTTCTTCCCTGCTCTAGTTCAGCTAGAGTAGACGTCATTCCTGACATCATTCGATGTTATAGCAGTGGAGGCCGCACTATTATTTTCACTGAGACAAAGGATTGTGCATCTGAGCTTTCTGAGAGGTTGCAGGGAGCAAGACCTTTGCATGGGGACATACAGCAAGGTCAGCGGGAGGTCACACTTGCAGGCTTCAGGTCTGGCAAATTCTCAACATTAGTAGCCACAAATGTGGCAGCTCGTGGACTGGATATCAATGATGTTCAATTAATTATTCAGTGTGAACCTCCACGTGATGTAGAAGACTATATCCATCGATCTGGACGCACTGGGAGAGCAGGTAATAGTGGAGTTGCTGTAATGCTTTATGACCCCAGAAAGTCAAACATATCTAAGATCGAAAGAGAATCTGGGGTGAAATTTGAGCATGTGTCTGCTCCTCAGCCAATTGATGTTGCCAAAGCTGCAGGTCTTAGTGCAGCAGAAATGGTTACTAATGTCTCTGATAGTGTAATTCCTGCATTCAAGAGTGTTGCTGAGGAGCTTCTAAAAACCTCAGGCCTATCTGCAGTAGATCTACTGTCAAAGGCTCTTGCTAAGGCTGCGGGCTACACCGATGTAAAGAAGAGGTCACTTCTGAGTTCTATGGAGAACCATGTCACAGTATTGCTGGAGGCTGGAAAACCCATTTACACAGCATCCTTTGCTTATTCGGCCTTGAGGAGGTTCTTGCCGGAGGAGAAGGTCGAGTCAGTTAAGGGTATGGCGCTAACAACTGATGGAAAGGGTGCAGTGTTTGATGTCGCTGCTGAAGATTTGGATATGTTTCTGAGGGGTGCGGATAATGCAGCCGGTATCAGTATACAGGTCCTGGACTCTTTGCCGAGTTTACAAGAAAAAGAAGCAAGGGGAGGACGATTTGGCAATGGTGGTGGTAGGTTTGGTGGAAGGGGTGGTGGCAGGGGTGGTGGAAGGAATGATAGGTTTGGCGGCGGGAGAGGCCGTGGCAGCTACAACAGATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0017151 GO:0019899 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD GUCT Helicase_C

Protein Analysis

681

Amino Acids

73.75

Weight (kDa)

9.16

Isoelectric Point (pI)

35.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	133 - 309	1.1e-44	DEAD/DEAH box helicase
Helicase_C	PF00271	349 - 453	4.9e-27	Helicase conserved C-terminal domain
DD_DDX21-DDX50	PF26142	487 - 539	1.4e-17	DDX21/DDX50 dimerisation domain
GUCT	PF08152	542 - 637	3.4e-28	GUCT (NUC152) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0011483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62190
fragaria_vesca	FvH4_7g28410
malus_domestica	MD01G1187800.v1.1 MD07G1259900.v1.1 MD07G1260300.v1.1
prunus_persica	Prupe.2G284200_v2.0.a1 Prupe.2G284200_v2.0.a1 Prupe.2G284200_v2.0.a1
pyrus_communis	pycom07g23330
rosa_chinensis	RchiOBHm_Chr1g0375371
rosa_laevigata	RLG00000026667
rosa_multiflora	Rmu_sc0000554.1_g000041 Rmu_ssc0000106.1_g000003
rosa_roxburghii	Rroxscaffold_4G00282810
rosa_rugosa	Rorug01G0390800
rosa_samantha	Rh1AG401100 Rh1BG363200 Rh1CG376500 Rh1DG394000
rosa_wichuraiana	Rw1G035610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	592
AatII	GACGTC	2 cut(s)	18, 1053
Acc36I	ACCTGC	3 cut(s)	592, 1346, 1475
AccI	GTMKAC	2 cut(s)	1047, 1879
AccII	CGCG	1 cut(s)	680
AclWI	GGATC	3 cut(s)	311, 676, 753
AcoI	YGGCCR	3 cut(s)	81, 448, 594
AcsI	RAATTY	4 cut(s)	530, 849, 1223, 1436
AcuI	CTGAAG	3 cut(s)	389, 1195, 1848
AcvI	CACGTG	1 cut(s)	1310
AcyI	GRCGYC	2 cut(s)	15, 1050
AfaI	GTAC	1 cut(s)	677
AfiI	CCNNNNNNNGG	3 cut(s)	339, 1166, 1740
AflII	CTTAAG	1 cut(s)	128
AgeI	ACCGGT	1 cut(s)	461
AgsI	TTSAA	7 cut(s)	386, 700, 784, 845, 884, 1283, 1543
AjnI	CCWGG	2 cut(s)	730, 1887
AleI	CACNNNNGTG	1 cut(s)	1247
Alw21I	GWGCWC	3 cut(s)	192, 576, 779
Alw26I	GTCTC	4 cut(s)	22, 170, 1103, 1522
AlwI	GGATC	3 cut(s)	311, 676, 753
AlwNI	CAGNNNCTG	1 cut(s)	1888
ApeKI	GCWGC	8 cut(s)	490, 1253, 1481, 1496, 1619, 1823, 1865, 2025
ApoI	RAATTY	4 cut(s)	530, 849, 1223, 1436
AseI	ATTAAT	1 cut(s)	1286
AsiGI	ACCGGT	1 cut(s)	461
Asp700I	GAANNNNTTC	1 cut(s)	849
AspLEI	GCGC	2 cut(s)	902, 1786
AspS9I	GGNCC	2 cut(s)	439, 1885
AsuC2I	CCSGG	1 cut(s)	452
AsuHPI	GGTGA	3 cut(s)	316, 340, 1444
AvaII	GGWCC	2 cut(s)	439, 1885
AxyI	CCTNAGG	1 cut(s)	1573
BalI	TGGCCA	1 cut(s)	596
BanII	GRGCYC	3 cut(s)	192, 457, 559
BauI	CACGAG	1 cut(s)	1257
BbrPI	CACGTG	1 cut(s)	1310
BbsI	GAAGAC	2 cut(s)	171, 1326
Bbv12I	GWGCWC	3 cut(s)	192, 576, 779
BbvCI	CCTCAGC	4 cut(s)	282, 818, 1458, 1554
BbvI	GCAGC	8 cut(s)	477, 1265, 1468, 1508, 1606, 1810, 1877, 2037
BccI	CCATC	5 cut(s)	431, 817, 1338, 1790, 2031
BceAI	ACGGC	4 cut(s)	68, 238, 565, 2004
BcgI	CGANNNNNNTGC	2 cut(s)	305, 339
BciT130I	CCWGG	2 cut(s)	732, 1889
BciVI	GTATCC	2 cut(s)	539, 786
BcnI	CCSGG	1 cut(s)	452
BcoDI	GTCTC	4 cut(s)	22, 170, 1103, 1522
BfaI	CTAG	5 cut(s)	585, 854, 971, 1032, 1041
BfmI	CTRYAG	3 cut(s)	963, 1482, 1584
BfoI	RGCGCY	1 cut(s)	1787
BfrI	CTTAAG	1 cut(s)	128
BfuAI	ACCTGC	3 cut(s)	592, 1346, 1475
BfuI	GTATCC	2 cut(s)	539, 786
BglII	AGATCT	2 cut(s)	967, 1591
BlpI	GCTNAGC	1 cut(s)	363
Bme1390I	CCNGG	3 cut(s)	452, 732, 1889
Bme18I	GGWCC	2 cut(s)	439, 1885
BmgT120I	GGNCC	2 cut(s)	439, 1885
BmiI	GGNNCC	2 cut(s)	39, 351
BmrFI	CCNGG	3 cut(s)	452, 732, 1889
BmrI	ACTGGG	1 cut(s)	1356
BmsI	GCATC	3 cut(s)	1008, 1133, 1724
BmuI	ACTGGG	1 cut(s)	1356
BpiI	GAAGAC	2 cut(s)	171, 1326
BplI	GAGNNNNNCTC	2 cut(s)	167, 199
BpmI	CTGGAG	2 cut(s)	53, 1709
Bpu10I	CCTNAGC	6 cut(s)	282, 525, 818, 1458, 1554, 1614
Bpu1102I	GCTNAGC	1 cut(s)	363
BpuEI	CTTGAG	2 cut(s)	793, 1756
BpuMI	CCSGG	1 cut(s)	452
Bsa29I	ATCGAT	1 cut(s)	1333
BsaAI	YACGTR	2 cut(s)	28, 1310
BsaHI	GRCGYC	2 cut(s)	15, 1050
BsaI	GGTCTC	1 cut(s)	170
BsaJI	CCNNGG	2 cut(s)	267, 2020
BsaWI	WCCGGW	2 cut(s)	461, 542
BsaXI	ACNNNNNCTCC	8 cut(s)	79, 109, 1342, 1359, 1372, 1389, 2005, 2035
Bsc4I	CCNNNNNNNGG	3 cut(s)	339, 1166, 1740
Bse118I	RCCGGY	2 cut(s)	461, 1868
Bse1I	ACTGG	2 cut(s)	1269, 1351
Bse21I	CCTNAGG	1 cut(s)	1573
Bse3DI	GCAATG	1 cut(s)	1948
BseBI	CCWGG	2 cut(s)	732, 1889
BseCI	ATCGAT	1 cut(s)	1333
BseDI	CCNNGG	2 cut(s)	267, 2020
BseGI	GGATG	2 cut(s)	828, 1715
BseLI	CCNNNNNNNGG	3 cut(s)	339, 1166, 1740
BseMI	GCAATG	1 cut(s)	1948
BseNI	ACTGG	2 cut(s)	1269, 1351
BseRI	GAGGAG	8 cut(s)	290, 299, 302, 305, 1446, 1571, 1753, 1769
BseX3I	CGGCCG	1 cut(s)	448
BseXI	GCAGC	8 cut(s)	477, 1265, 1468, 1508, 1606, 1810, 1877, 2037
BsgI	GTGCAG	2 cut(s)	1515, 1827
Bsh1236I	CGCG	1 cut(s)	680
Bsh1285I	CGRYCG	1 cut(s)	451
BshTI	ACCGGT	1 cut(s)	461
BshVI	ATCGAT	1 cut(s)	1333
BsiEI	CGRYCG	1 cut(s)	451
BsiHKAI	GWGCWC	3 cut(s)	192, 576, 779
BsiSI	CCGG	5 cut(s)	451, 462, 543, 1751, 1869
BsiWI	CGTACG	1 cut(s)	675
BslFI	GGGAC	1 cut(s)	1184
BslI	CCNNNNNNNGG	3 cut(s)	339, 1166, 1740
BsmAI	GTCTC	4 cut(s)	22, 170, 1103, 1522
BsmBI	CGTCTC	1 cut(s)	22
BsmFI	GGGAC	1 cut(s)	1184
BsmI	GAATGC	2 cut(s)	328, 1538
Bso31I	GGTCTC	1 cut(s)	170
Bsp1286I	GDGCHC	5 cut(s)	192, 457, 559, 576, 779
Bsp143I	GATC	7 cut(s)	316, 668, 745, 967, 1334, 1413, 1591
Bsp1720I	GCTNAGC	1 cut(s)	363
BspDI	ATCGAT	1 cut(s)	1333
BspFNI	CGCG	1 cut(s)	680
BspLI	GGNNCC	2 cut(s)	39, 351
BspMAI	CTGCAG	2 cut(s)	1486, 1588
BspMI	ACCTGC	3 cut(s)	592, 1346, 1475
BspPI	GGATC	3 cut(s)	311, 676, 753
BspQI	GCTCTTC	1 cut(s)	236
BspTI	CTTAAG	1 cut(s)	128
BspTNI	GGTCTC	1 cut(s)	170
BsrDI	GCAATG	1 cut(s)	1948
BsrFI	RCCGGY	2 cut(s)	461, 1868
BsrI	ACTGG	2 cut(s)	1269, 1351
BssAI	RCCGGY	2 cut(s)	461, 1868
BssECI	CCNNGG	2 cut(s)	267, 2020
BssMI	GATC	7 cut(s)	316, 668, 745, 967, 1334, 1413, 1591
BssNAI	GTATAC	1 cut(s)	1880
BssNI	GRCGYC	2 cut(s)	15, 1050
BssSI	CACGAG	1 cut(s)	1257
BssT1I	CCWWGG	1 cut(s)	267
Bst1107I	GTATAC	1 cut(s)	1880
Bst2BI	CACGAG	1 cut(s)	1257
Bst2UI	CCWGG	2 cut(s)	732, 1889
Bst4CI	ACNGT	4 cut(s)	565, 964, 1599, 1681
Bst6I	CTCTTC	3 cut(s)	236, 695, 1637
BstACI	GRCGYC	2 cut(s)	15, 1050
BstAFI	CTTAAG	1 cut(s)	128
BstAPI	GCANNNNNTGC	1 cut(s)	1721
BstBAI	YACGTR	2 cut(s)	28, 1310
BstC8I	GCNNGC	7 cut(s)	81, 457, 594, 652, 997, 1207, 1624
BstDSI	CCRYGG	1 cut(s)	2020
BstEII	GGTNACC	1 cut(s)	328
BstENI	CCTNNNNNAGG	1 cut(s)	1738
BstF5I	GGATG	2 cut(s)	828, 1715
BstFNI	CGCG	1 cut(s)	680
BstH2I	RGCGCY	1 cut(s)	1787
BstHHI	GCGC	2 cut(s)	902, 1786
BstKTI	GATC	7 cut(s)	319, 671, 748, 970, 1337, 1416, 1594
BstMAI	GTCTC	4 cut(s)	22, 170, 1103, 1522
BstMBI	GATC	7 cut(s)	316, 668, 745, 967, 1334, 1413, 1591
BstMCI	CGRYCG	1 cut(s)	451
BstNI	CCWGG	2 cut(s)	732, 1889
BstNSI	RCATGY	1 cut(s)	1448
BstPI	GGTNACC	1 cut(s)	328
BstSCI	CCNGG	3 cut(s)	450, 730, 1887
BstSFI	CTRYAG	3 cut(s)	963, 1482, 1584
BstUI	CGCG	1 cut(s)	680
BstV1I	GCAGC	8 cut(s)	477, 1265, 1468, 1508, 1606, 1810, 1877, 2037
BstV2I	GAAGAC	2 cut(s)	171, 1326
BstX2I	RGATCY	3 cut(s)	668, 967, 1591
BstXI	CCANNNNNNTGG	2 cut(s)	1249, 1337
BstYI	RGATCY	3 cut(s)	668, 967, 1591
BstZ17I	GTATAC	1 cut(s)	1880
BstZI	CGGCCG	1 cut(s)	448
Bsu15I	ATCGAT	1 cut(s)	1333
Bsu36I	CCTNAGG	1 cut(s)	1573
BsuI	GTATCC	2 cut(s)	539, 786
BsuTUI	ATCGAT	1 cut(s)	1333
BtgI	CCRYGG	1 cut(s)	2020
BtsCI	GGATG	2 cut(s)	828, 1715
BtsI	GCAGTG	2 cut(s)	1087, 1815
BtsIMutI	CAGTG	5 cut(s)	1087, 1104, 1301, 1344, 1815
BveI	ACCTGC	3 cut(s)	592, 1346, 1475
Cac8I	GCNNGC	7 cut(s)	81, 457, 594, 652, 997, 1207, 1624
CaiI	CAGNNNCTG	1 cut(s)	1888
CfoI	GCGC	2 cut(s)	902, 1786
Cfr10I	RCCGGY	2 cut(s)	461, 1868
Cfr13I	GGNCC	2 cut(s)	439, 1885
ClaI	ATCGAT	1 cut(s)	1333
CseI	GACGC	1 cut(s)	1350
Csp6I	GTAC	1 cut(s)	676
CspAI	ACCGGT	1 cut(s)	461
CspCI	CAANNNNNGTGG	2 cut(s)	1930, 1965
CviAII	CATG	4 cut(s)	409, 1166, 1445, 1673
CviQI	GTAC	1 cut(s)	676
DpnI	GATC	7 cut(s)	318, 670, 747, 969, 1336, 1415, 1593
DpnII	GATC	7 cut(s)	316, 668, 745, 967, 1334, 1413, 1591
EaeI	YGGCCR	3 cut(s)	81, 448, 594
EagI	CGGCCG	1 cut(s)	448
Eam1104I	CTCTTC	3 cut(s)	236, 695, 1637
EarI	CTCTTC	3 cut(s)	236, 695, 1637
EciI	GGCGGA	1 cut(s)	326
Ecl136II	GAGCTC	1 cut(s)	190
EclXI	CGGCCG	1 cut(s)	448
Eco130I	CCWWGG	1 cut(s)	267
Eco147I	AGGCCT	1 cut(s)	1578
Eco24I	GRGCYC	3 cut(s)	192, 457, 559
Eco31I	GGTCTC	1 cut(s)	170
Eco32I	GATATC	1 cut(s)	1270
Eco47I	GGWCC	2 cut(s)	439, 1885
Eco52I	CGGCCG	1 cut(s)	448
Eco53kI	GAGCTC	1 cut(s)	190
Eco57I	CTGAAG	3 cut(s)	389, 1195, 1848
Eco72I	CACGTG	1 cut(s)	1310
Eco81I	CCTNAGG	1 cut(s)	1573
Eco91I	GGTNACC	1 cut(s)	328
EcoICRI	GAGCTC	1 cut(s)	190
EcoNI	CCTNNNNNAGG	1 cut(s)	1738
EcoO109I	RGGNCCY	1 cut(s)	1885
EcoO65I	GGTNACC	1 cut(s)	328
EcoRII	CCWGG	2 cut(s)	730, 1887
EcoRV	GATATC	1 cut(s)	1270
EcoT14I	CCWWGG	1 cut(s)	267
EcoT38I	GRGCYC	3 cut(s)	192, 457, 559
ErhI	CCWWGG	1 cut(s)	267
Esp3I	CGTCTC	1 cut(s)	22
FaeI	CATG	4 cut(s)	412, 1169, 1448, 1676
FaqI	GGGAC	1 cut(s)	1184
FatI	CATG	4 cut(s)	408, 1165, 1444, 1672
FauI	CCCGC	3 cut(s)	1182, 1615, 2003
FblI	GTMKAC	2 cut(s)	1047, 1879
FokI	GGATG	2 cut(s)	835, 1702
FriOI	GRGCYC	3 cut(s)	192, 457, 559
FspBI	CTAG	5 cut(s)	585, 854, 971, 1032, 1041
GlaI	GCGC	2 cut(s)	901, 1785
GsuI	CTGGAG	2 cut(s)	53, 1709
HaeII	RGCGCY	1 cut(s)	1787
HapII	CCGG	5 cut(s)	451, 462, 543, 1751, 1869
HgaI	GACGC	1 cut(s)	1350
HhaI	GCGC	2 cut(s)	902, 1786
Hin1I	GRCGYC	2 cut(s)	15, 1050
Hin1II	CATG	4 cut(s)	412, 1169, 1448, 1676
Hin6I	GCGC	2 cut(s)	900, 1784
HinP1I	GCGC	2 cut(s)	900, 1784
HincII	GTYRAC	1 cut(s)	835
HindII	GTYRAC	1 cut(s)	835
HindIII	AAGCTT	1 cut(s)	125
HinfI	GANTC	8 cut(s)	92, 119, 227, 503, 682, 1424, 1766, 1892
HpaII	CCGG	5 cut(s)	451, 462, 543, 1751, 1869
HphI	GGTGA	3 cut(s)	316, 340, 1444
Hpy166II	GTNNAC	6 cut(s)	835, 1048, 1262, 1301, 1880, 1907
Hpy188III	TCNNGA	4 cut(s)	686, 1058, 1338, 1543
Hpy8I	GTNNAC	6 cut(s)	835, 1048, 1262, 1301, 1880, 1907
HpyCH4III	ACNGT	4 cut(s)	565, 964, 1599, 1681
HpyCH4IV	ACGT	5 cut(s)	15, 27, 413, 1050, 1309
HpySE526I	ACGT	5 cut(s)	15, 27, 413, 1050, 1309
Hsp92I	GRCGYC	2 cut(s)	15, 1050
Hsp92II	CATG	4 cut(s)	412, 1169, 1448, 1676
HspAI	GCGC	2 cut(s)	900, 1784
Kzo9I	GATC	7 cut(s)	316, 668, 745, 967, 1334, 1413, 1591
LguI	GCTCTTC	1 cut(s)	236
LmnI	GCTCC	9 cut(s)	43, 76, 171, 188, 355, 589, 1151, 1459, 1558
Lsp1109I	GCAGC	8 cut(s)	477, 1265, 1468, 1508, 1606, 1810, 1877, 2037
LweI	GCATC	3 cut(s)	1008, 1133, 1724
MaeI	CTAG	5 cut(s)	585, 854, 971, 1032, 1041
MaeII	ACGT	5 cut(s)	15, 27, 413, 1050, 1309
MaeIII	GTNAC	7 cut(s)	85, 328, 871, 1195, 1507, 1647, 1675
MalI	GATC	7 cut(s)	318, 670, 747, 969, 1336, 1415, 1593
MboI	GATC	7 cut(s)	316, 668, 745, 967, 1334, 1413, 1591
MfeI	CAATTG	1 cut(s)	1464
MflI	RGATCY	3 cut(s)	668, 967, 1591
MhlI	GDGCHC	5 cut(s)	192, 457, 559, 576, 779
MlsI	TGGCCA	1 cut(s)	596
MluCI	AATT	8 cut(s)	530, 849, 1223, 1283, 1287, 1436, 1464, 1530
MluNI	TGGCCA	1 cut(s)	596
MlyI	GAGTC	6 cut(s)	86, 128, 512, 676, 1775, 1886
MmeI	TCCRAC	1 cut(s)	417
Mox20I	TGGCCA	1 cut(s)	596
MroXI	GAANNNNTTC	1 cut(s)	849
MscI	TGGCCA	1 cut(s)	596
MseI	TTAA	5 cut(s)	129, 509, 945, 1286, 1773
MslI	CAYNNNNRTG	1 cut(s)	1247
Msp20I	TGGCCA	1 cut(s)	596
MspA1I	CMGCKG	1 cut(s)	1189
MspCI	CTTAAG	1 cut(s)	128
MspI	CCGG	5 cut(s)	451, 462, 543, 1751, 1869
MspR9I	CCNGG	3 cut(s)	452, 732, 1889
MunI	CAATTG	1 cut(s)	1464
Mva1269I	GAATGC	2 cut(s)	328, 1538
MvaI	CCWGG	2 cut(s)	732, 1889
MvnI	CGCG	1 cut(s)	680
NciI	CCSGG	1 cut(s)	452
NdeII	GATC	7 cut(s)	316, 668, 745, 967, 1334, 1413, 1591
NlaIII	CATG	4 cut(s)	412, 1169, 1448, 1676
NlaIV	GGNNCC	2 cut(s)	39, 351
NmeAIII	GCCGAG	2 cut(s)	171, 1926
NmuCI	GTSAC	4 cut(s)	328, 1195, 1647, 1675
NspI	RCATGY	1 cut(s)	1448
OliI	CACNNNNGTG	1 cut(s)	1247
PaqCI	CACCTGC	1 cut(s)	592
PceI	AGGCCT	1 cut(s)	1578
PciSI	GCTCTTC	1 cut(s)	236
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PctI	GAATGC	2 cut(s)	328, 1538
PdmI	GAANNNNTTC	1 cut(s)	849
PfeI	GAWTC	2 cut(s)	227, 1424
Pfl23II	CGTACG	1 cut(s)	675
PflFI	GACNNNGTC	2 cut(s)	200, 443
PfoI	TCCNGGA	1 cut(s)	1887
PinAI	ACCGGT	1 cut(s)	461
PleI	GAGTC	6 cut(s)	86, 127, 511, 676, 1774, 1886
PmaCI	CACGTG	1 cut(s)	1310
PmlI	CACGTG	1 cut(s)	1310
PpsI	GAGTC	6 cut(s)	86, 127, 511, 676, 1774, 1886
Ppu21I	YACGTR	2 cut(s)	28, 1310
PpuMI	RGGWCCY	1 cut(s)	1885
PshBI	ATTAAT	1 cut(s)	1286
Psp124BI	GAGCTC	1 cut(s)	192
Psp5II	RGGWCCY	1 cut(s)	1885
Psp6I	CCWGG	2 cut(s)	730, 1887
PspCI	CACGTG	1 cut(s)	1310
PspEI	GGTNACC	1 cut(s)	328
PspGI	CCWGG	2 cut(s)	730, 1887
PspLI	CGTACG	1 cut(s)	675
PspN4I	GGNNCC	2 cut(s)	39, 351
PspPI	GGNCC	2 cut(s)	439, 1885
PspPPI	RGGWCCY	1 cut(s)	1885
PstI	CTGCAG	2 cut(s)	1486, 1588
PstNI	CAGNNNCTG	1 cut(s)	1888
PsuI	RGATCY	3 cut(s)	668, 967, 1591
PsyI	GACNNNGTC	2 cut(s)	200, 443
RsaI	GTAC	1 cut(s)	677
RsaNI	GTAC	1 cut(s)	676
RseI	CAYNNNNRTG	1 cut(s)	1247
SacI	GAGCTC	1 cut(s)	192
SapI	GCTCTTC	1 cut(s)	236
SaqAI	TTAA	5 cut(s)	129, 509, 945, 1286, 1773
Sau3AI	GATC	7 cut(s)	316, 668, 745, 967, 1334, 1413, 1591
Sau96I	GGNCC	2 cut(s)	439, 1885
SchI	GAGTC	6 cut(s)	86, 128, 512, 676, 1775, 1886
ScrFI	CCNGG	3 cut(s)	452, 732, 1889
SduI	GDGCHC	5 cut(s)	192, 457, 559, 576, 779
SfaNI	GCATC	3 cut(s)	1008, 1133, 1724
SfcI	CTRYAG	3 cut(s)	963, 1482, 1584
SinI	GGWCC	2 cut(s)	439, 1885
SmiMI	CAYNNNNRTG	1 cut(s)	1247
SmlI	CTYRAG	3 cut(s)	128, 772, 1735
SmoI	CTYRAG	3 cut(s)	128, 772, 1735
Sse9I	AATT	8 cut(s)	530, 849, 1223, 1283, 1287, 1436, 1464, 1530
SseBI	AGGCCT	1 cut(s)	1578
SspI	AATATT	1 cut(s)	928
SspMI	CTAG	5 cut(s)	585, 854, 971, 1032, 1041
SstI	GAGCTC	1 cut(s)	192
StuI	AGGCCT	1 cut(s)	1578
StyD4I	CCNGG	3 cut(s)	450, 730, 1887
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	4 cut(s)	565, 964, 1599, 1681
TaiI	ACGT	5 cut(s)	18, 30, 416, 1053, 1312
TaqI	TCGA	7 cut(s)	68, 417, 618, 1069, 1333, 1416, 1764
TasI	AATT	8 cut(s)	530, 849, 1223, 1283, 1287, 1436, 1464, 1530
TauI	GCSGC	2 cut(s)	1092, 2010
TfiI	GAWTC	2 cut(s)	227, 1424
Tru1I	TTAA	5 cut(s)	129, 509, 945, 1286, 1773
Tru9I	TTAA	5 cut(s)	129, 509, 945, 1286, 1773
TscAI	CASTG	5 cut(s)	1087, 1111, 1301, 1351, 1815
TseFI	GTSAC	4 cut(s)	328, 1195, 1647, 1675
TseI	GCWGC	8 cut(s)	490, 1253, 1481, 1496, 1619, 1823, 1865, 2025
Tsp45I	GTSAC	4 cut(s)	328, 1195, 1647, 1675
TspDTI	ATGAA	5 cut(s)	74, 816, 825, 996, 1004
TspGWI	ACGGA	2 cut(s)	342, 663
TspRI	CASTG	5 cut(s)	1087, 1111, 1301, 1351, 1815
Tth111I	GACNNNGTC	2 cut(s)	200, 443
Vha464I	CTTAAG	1 cut(s)	128
VpaK11BI	GGWCC	2 cut(s)	439, 1885
VspI	ATTAAT	1 cut(s)	1286
XagI	CCTNNNNNAGG	1 cut(s)	1738
XapI	RAATTY	4 cut(s)	530, 849, 1223, 1436
XceI	RCATGY	1 cut(s)	1448
XcmI	CCANNNNNNNNNTGG	1 cut(s)	589
XmiI	GTMKAC	2 cut(s)	1047, 1879
XmnI	GAANNNNTTC	1 cut(s)	849
XspI	CTAG	5 cut(s)	585, 854, 971, 1032, 1041
ZraI	GACGTC	2 cut(s)	16, 1051

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.